Wall clock time and date at job start Tue Mar 31 2020 15:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34768 * 117.00024 * 2 1 4 4 O 1.21528 * 119.99652 * 359.97438 * 3 2 1 5 5 C 1.47253 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.40054 * 120.20712 * 270.00443 * 5 3 2 7 7 F 1.35104 * 120.06398 * 359.97438 * 6 5 3 8 8 C 1.38071 * 119.86963 * 179.72354 * 6 5 3 9 9 C 1.38458 * 120.29583 * 0.25277 * 8 6 5 10 10 C 1.38271 * 120.42249 * 359.97438 * 9 8 6 11 11 F 1.35102 * 119.93539 * 180.02562 * 10 9 8 12 12 C 1.38812 * 120.12423 * 0.02562 * 10 9 8 13 13 O 1.35695 * 120.15213 * 180.02562 * 12 10 9 14 14 C 1.42899 * 117.00249 * 89.99322 * 13 12 10 15 15 H 1.08994 * 110.64033 * 330.70463 * 14 13 12 16 16 C 1.55161 * 110.72047 * 207.56260 * 14 13 12 17 17 C 1.54908 * 101.58138 * 206.13648 * 16 14 13 18 18 N 1.47430 * 104.83184 * 37.00899 * 17 16 14 19 19 C 1.36938 * 125.64429 * 155.83604 * 18 17 16 20 20 H 1.08000 * 119.99556 * 180.02562 * 19 18 17 21 21 C 1.38806 * 120.00332 * 0.02593 * 19 18 17 22 22 N 1.31621 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47339 * 90.00052 * 23 21 19 25 25 H 1.48504 * 109.47014 * 209.99805 * 23 21 19 26 26 H 1.48493 * 109.47060 * 329.99478 * 23 21 19 27 27 C 1.47320 * 108.73667 * 335.71549 * 18 17 16 28 28 H 1.08995 * 109.47279 * 60.00487 * 1 2 3 29 29 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47481 * 299.99918 * 1 2 3 31 31 H 1.07998 * 119.84997 * 180.26904 * 8 6 5 32 32 H 1.08001 * 119.78852 * 180.02562 * 9 8 6 33 33 H 1.09002 * 111.00419 * 324.20897 * 16 14 13 34 34 H 1.08997 * 111.00630 * 88.05917 * 16 14 13 35 35 H 1.08999 * 110.36695 * 155.84274 * 17 16 14 36 36 H 1.09001 * 110.36813 * 278.05968 * 17 16 14 37 37 H 0.97003 * 119.99813 * 180.02562 * 22 21 19 38 38 H 1.09003 * 110.06247 * 241.87680 * 27 18 17 39 39 H 1.08997 * 109.84910 * 120.60776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5343 1.2779 0.0006 6 6 4.2375 1.3149 1.2112 7 9 3.5680 1.2805 2.3842 8 6 5.6166 1.3815 1.2036 9 6 6.3076 1.4170 0.0043 10 6 5.6254 1.3858 -1.1980 11 9 6.3096 1.4204 -2.3624 12 6 4.2390 1.3189 -1.2108 13 8 3.5689 1.2877 -2.3903 14 6 3.3100 0.0011 -2.9556 15 1 4.0846 -0.7088 -2.6658 16 6 3.1994 0.0924 -4.5006 17 6 2.2926 -1.1223 -4.8198 18 7 1.3237 -1.1720 -3.7097 19 6 0.0796 -1.7419 -3.7613 20 1 -0.5582 -1.7259 -2.8899 21 6 -0.3617 -2.3402 -4.9335 22 7 0.4154 -2.3593 -5.9956 23 14 -2.0591 -3.1170 -5.0039 24 1 -3.0503 -2.1019 -5.4420 25 1 -2.0472 -4.2458 -5.9689 26 1 -2.4290 -3.6212 -3.6571 27 6 1.9159 -0.5097 -2.5346 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 6.1588 1.4056 2.1373 32 1 7.3864 1.4686 0.0079 33 1 2.7239 1.0252 -4.8038 34 1 4.1774 -0.0161 -4.9694 35 1 1.7761 -0.9714 -5.7677 36 1 2.8827 -2.0382 -4.8517 37 1 0.1068 -2.7771 -6.8149 38 1 2.0139 -1.2209 -1.7144 39 1 1.2908 0.3290 -2.2283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234306401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:01 Heat of formation + Delta-G solvation = -139.534935 kcal Electronic energy + Delta-G solvation = -29154.685363 eV Core-core repulsion = 24700.737667 eV Total energy + Delta-G solvation = -4453.947695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.37075 -49.12344 -40.82576 -39.40037 -38.07291 -36.38934 -36.12651 -32.43567 -31.61534 -30.08594 -29.20144 -27.66648 -27.33425 -24.78103 -24.48124 -23.02604 -21.37939 -20.55200 -20.31424 -18.70808 -18.26498 -17.95620 -17.34290 -17.12708 -16.68725 -16.31132 -16.16794 -15.78999 -15.66975 -14.88819 -14.74809 -14.61818 -14.43183 -13.96856 -13.76789 -13.33711 -13.20701 -12.95538 -12.60631 -12.33509 -12.17040 -12.11390 -11.87581 -11.72362 -11.43885 -11.05288 -10.85751 -10.70575 -10.63862 -10.43116 -10.16729 -9.87090 -9.70690 -9.64272 -9.45929 -8.88234 -8.70537 -6.90613 -5.70915 -3.12908 0.28527 0.46408 1.98722 2.51912 2.76091 3.25238 3.37116 3.41638 3.43796 3.74323 3.90356 4.22307 4.43197 4.44919 4.55646 4.86201 5.18511 5.20525 5.24856 5.32342 5.41543 5.42956 5.45059 5.45644 5.53674 5.57223 5.70712 5.81717 6.05977 6.24539 6.32458 6.40022 6.49140 6.54956 6.65042 7.38012 7.42454 7.54197 7.62945 7.77261 8.28246 9.14928 9.75596 10.39441 11.33480 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.004446 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.010810 B = 6295.656800 C = 7662.664103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.338 6.338 3 C 0.524 3.476 4 O -0.482 6.482 5 C -0.138 4.138 6 C 0.143 3.857 7 F -0.122 7.122 8 C -0.135 4.135 9 C -0.092 4.092 10 C 0.073 3.927 11 F -0.118 7.118 12 C 0.145 3.855 13 O -0.315 6.315 14 C 0.074 3.926 15 H 0.073 0.927 16 C -0.136 4.136 17 C 0.153 3.847 18 N -0.600 5.600 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.118 3.882 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.017 0.983 37 H 0.253 0.747 38 H 0.041 0.959 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.917 6.105 13.736 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.253 6.253 3 C 0.365 3.635 4 O -0.369 6.369 5 C -0.141 4.141 6 C 0.123 3.877 7 F -0.100 7.100 8 C -0.154 4.154 9 C -0.111 4.111 10 C 0.053 3.947 11 F -0.097 7.097 12 C 0.099 3.901 13 O -0.231 6.231 14 C 0.020 3.980 15 H 0.091 0.909 16 C -0.175 4.175 17 C 0.028 3.972 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.008 4.008 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.445 6.412 13.468 18.801 hybrid contribution -0.950 -0.472 0.064 1.062 sum 10.495 5.940 13.532 18.126 Atomic orbital electron populations 1.23400 0.75033 1.04585 1.02665 1.86724 1.24350 1.31184 1.83087 1.20354 0.87810 0.82591 0.72770 1.90888 1.65903 1.36140 1.43932 1.19354 0.91763 1.10034 0.92974 1.17318 0.89897 1.00830 0.79642 1.91572 1.80575 1.93358 1.44522 1.20888 0.91155 1.03450 0.99865 1.21076 1.01683 0.98791 0.89552 1.17812 0.88397 1.05734 0.82748 1.91566 1.78746 1.93673 1.45683 1.18349 0.88465 0.97373 0.85959 1.86146 1.74138 1.31289 1.31529 1.23907 0.97906 0.80587 0.95618 0.90877 1.23248 1.01007 1.02616 0.90609 1.22004 0.88810 0.90861 0.95522 1.44448 1.14696 1.66551 1.07021 1.19022 0.89797 1.28758 0.97310 0.90475 1.24782 0.98657 1.01108 0.95959 1.69751 1.35620 1.49459 1.02245 0.86071 0.83469 0.78629 0.77313 1.21535 1.21587 1.20707 1.22013 0.91128 0.95891 0.91760 0.90852 0.87373 0.92052 0.82417 0.82428 0.90708 0.91334 0.86776 0.96493 0.93593 0.94118 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.90 101.05 1.00 1.54 16 2 O -0.34 -5.68 7.30 -40.68 -0.30 -5.98 16 3 C 0.52 9.14 5.10 34.39 0.18 9.31 16 4 O -0.48 -9.43 16.90 -19.29 -0.33 -9.76 16 5 C -0.14 -2.09 5.77 -104.82 -0.60 -2.70 16 6 C 0.14 1.71 7.29 -38.96 -0.28 1.43 16 7 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 8 C -0.13 -1.12 10.00 -39.56 -0.40 -1.51 16 9 C -0.09 -0.78 10.00 -39.49 -0.39 -1.17 16 10 C 0.07 0.90 7.30 -39.36 -0.29 0.62 16 11 F -0.12 -1.56 17.11 2.25 0.04 -1.53 16 12 C 0.15 2.23 5.62 -38.63 -0.22 2.01 16 13 O -0.31 -5.75 9.13 -18.79 -0.17 -5.93 16 14 C 0.07 1.41 3.48 -24.89 -0.09 1.33 16 15 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 16 C -0.14 -2.69 6.81 -24.58 -0.17 -2.86 16 17 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 18 N -0.60 -15.27 3.40 -169.83 -0.58 -15.85 16 19 C -0.22 -6.01 10.28 -15.06 -0.15 -6.16 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 C 0.12 2.55 4.91 -2.90 -0.01 2.53 16 28 H 0.07 1.20 7.49 -51.93 -0.39 0.81 16 29 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.11 3.07 5.87 -51.93 -0.30 2.76 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 39 H 0.03 0.68 5.35 -51.93 -0.28 0.40 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -31.95 335.88 -6.48 -38.43 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.24 Total: -1.48 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.54 Total: 7.67 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.02 Total: -41.64 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.79 Total: -21.66 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.95 -6.48 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234306401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.103 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds