Wall clock time and date at job start Tue Mar 31 2020 15:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34768 * 117.00024 * 2 1 4 4 O 1.21528 * 119.99652 * 359.97438 * 3 2 1 5 5 C 1.47253 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.40054 * 120.20712 * 270.00443 * 5 3 2 7 7 F 1.35104 * 120.06398 * 359.97438 * 6 5 3 8 8 C 1.38071 * 119.86963 * 179.72354 * 6 5 3 9 9 C 1.38458 * 120.29583 * 0.25277 * 8 6 5 10 10 C 1.38271 * 120.42249 * 359.97438 * 9 8 6 11 11 F 1.35102 * 119.93539 * 180.02562 * 10 9 8 12 12 C 1.38812 * 120.12423 * 0.02562 * 10 9 8 13 13 O 1.35695 * 120.15213 * 180.02562 * 12 10 9 14 14 C 1.42899 * 117.00249 * 89.99322 * 13 12 10 15 15 H 1.08994 * 110.64033 * 330.70463 * 14 13 12 16 16 C 1.55161 * 110.72047 * 207.56260 * 14 13 12 17 17 C 1.54908 * 101.58138 * 206.13648 * 16 14 13 18 18 N 1.47430 * 104.83184 * 37.00899 * 17 16 14 19 19 C 1.36938 * 125.64429 * 155.83604 * 18 17 16 20 20 H 1.08000 * 119.99556 * 180.02562 * 19 18 17 21 21 C 1.38806 * 120.00332 * 0.02593 * 19 18 17 22 22 N 1.31621 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47339 * 90.00052 * 23 21 19 25 25 H 1.48504 * 109.47014 * 209.99805 * 23 21 19 26 26 H 1.48493 * 109.47060 * 329.99478 * 23 21 19 27 27 C 1.47320 * 108.73667 * 335.71549 * 18 17 16 28 28 H 1.08995 * 109.47279 * 60.00487 * 1 2 3 29 29 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47481 * 299.99918 * 1 2 3 31 31 H 1.07998 * 119.84997 * 180.26904 * 8 6 5 32 32 H 1.08001 * 119.78852 * 180.02562 * 9 8 6 33 33 H 1.09002 * 111.00419 * 324.20897 * 16 14 13 34 34 H 1.08997 * 111.00630 * 88.05917 * 16 14 13 35 35 H 1.08999 * 110.36695 * 155.84274 * 17 16 14 36 36 H 1.09001 * 110.36813 * 278.05968 * 17 16 14 37 37 H 0.97003 * 119.99813 * 180.02562 * 22 21 19 38 38 H 1.09003 * 110.06247 * 241.87680 * 27 18 17 39 39 H 1.08997 * 109.84910 * 120.60776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5343 1.2779 0.0006 6 6 4.2375 1.3149 1.2112 7 9 3.5680 1.2805 2.3842 8 6 5.6166 1.3815 1.2036 9 6 6.3076 1.4170 0.0043 10 6 5.6254 1.3858 -1.1980 11 9 6.3096 1.4204 -2.3624 12 6 4.2390 1.3189 -1.2108 13 8 3.5689 1.2877 -2.3903 14 6 3.3100 0.0011 -2.9556 15 1 4.0846 -0.7088 -2.6658 16 6 3.1994 0.0924 -4.5006 17 6 2.2926 -1.1223 -4.8198 18 7 1.3237 -1.1720 -3.7097 19 6 0.0796 -1.7419 -3.7613 20 1 -0.5582 -1.7259 -2.8899 21 6 -0.3617 -2.3402 -4.9335 22 7 0.4154 -2.3593 -5.9956 23 14 -2.0591 -3.1170 -5.0039 24 1 -3.0503 -2.1019 -5.4420 25 1 -2.0472 -4.2458 -5.9689 26 1 -2.4290 -3.6212 -3.6571 27 6 1.9159 -0.5097 -2.5346 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 6.1588 1.4056 2.1373 32 1 7.3864 1.4686 0.0079 33 1 2.7239 1.0252 -4.8038 34 1 4.1774 -0.0161 -4.9694 35 1 1.7761 -0.9714 -5.7677 36 1 2.8827 -2.0382 -4.8517 37 1 0.1068 -2.7771 -6.8149 38 1 2.0139 -1.2209 -1.7144 39 1 1.2908 0.3290 -2.2283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234306401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:00 Heat of formation + Delta-G solvation = -158.557995 kcal Electronic energy + Delta-G solvation = -29155.510264 eV Core-core repulsion = 24700.737667 eV Total energy + Delta-G solvation = -4454.772597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.29127 -50.07631 -42.07625 -40.67756 -39.35031 -37.75441 -37.65781 -34.34083 -32.66723 -31.41339 -30.73017 -29.07567 -28.83828 -26.57159 -25.64734 -24.09138 -22.54986 -22.18475 -22.07182 -19.89578 -19.37622 -19.19352 -18.85532 -18.51157 -17.88163 -17.42427 -17.17146 -17.14473 -16.75849 -16.63737 -16.15149 -15.92431 -15.56854 -15.21328 -15.00722 -14.93067 -14.35925 -14.29414 -14.08126 -13.75821 -13.54260 -13.43229 -13.33239 -13.00593 -12.90658 -12.81039 -12.64934 -12.32399 -12.05864 -11.96464 -11.86133 -11.81444 -11.48197 -11.17751 -10.77536 -10.40556 -9.81505 -8.95114 -7.79783 -5.24891 -0.63994 -0.44405 0.67931 1.41929 1.46902 1.48786 1.56950 1.76512 2.20939 2.47929 2.83452 2.89569 3.31774 3.32815 3.52213 3.55532 3.60667 3.67286 3.90429 3.92876 3.97032 4.11452 4.20272 4.43536 4.49293 4.52114 4.59903 4.68396 4.70778 4.80591 4.86582 4.87990 4.92280 5.06520 5.36038 5.42357 5.52657 5.72072 6.10129 6.25644 6.31417 7.06442 7.71572 8.35389 9.22950 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.004446 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.010810 B = 6295.656800 C = 7662.664103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.521 3.479 4 O -0.517 6.517 5 C -0.165 4.165 6 C 0.136 3.864 7 F -0.127 7.127 8 C -0.102 4.102 9 C -0.063 4.063 10 C 0.070 3.930 11 F -0.125 7.125 12 C 0.107 3.893 13 O -0.331 6.331 14 C 0.086 3.914 15 H 0.090 0.910 16 C -0.124 4.124 17 C 0.156 3.844 18 N -0.620 5.620 19 C -0.237 4.237 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.125 3.875 28 H 0.049 0.951 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.208 0.792 32 H 0.207 0.793 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.003 0.997 37 H 0.249 0.751 38 H 0.043 0.957 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.453 6.200 16.048 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C 0.364 3.636 4 O -0.405 6.405 5 C -0.168 4.168 6 C 0.116 3.884 7 F -0.105 7.105 8 C -0.120 4.120 9 C -0.081 4.081 10 C 0.050 3.950 11 F -0.103 7.103 12 C 0.062 3.938 13 O -0.247 6.247 14 C 0.031 3.969 15 H 0.108 0.892 16 C -0.162 4.162 17 C 0.031 3.969 18 N -0.348 5.348 19 C -0.365 4.365 20 H 0.101 0.899 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.807 3.193 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.192 1.192 27 C -0.001 4.001 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.225 0.775 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.998 6.515 15.812 22.100 hybrid contribution -1.665 -0.459 -0.530 1.807 sum 12.333 6.055 15.282 20.550 Atomic orbital electron populations 1.23523 0.74406 1.05622 1.02448 1.86715 1.25199 1.31336 1.82818 1.20941 0.89077 0.82096 0.71494 1.90849 1.67006 1.37021 1.45670 1.19406 0.90281 1.12565 0.94509 1.17616 0.91211 1.01166 0.78388 1.91564 1.81044 1.93425 1.44471 1.21462 0.89223 0.99433 1.01844 1.21626 1.03767 0.95180 0.87511 1.18027 0.87203 1.05867 0.83922 1.91554 1.78540 1.93758 1.46462 1.18610 0.89756 1.00730 0.84743 1.86109 1.75052 1.30357 1.33207 1.23623 0.96634 0.81824 0.94818 0.89187 1.23048 1.01360 0.99945 0.91843 1.21776 0.88905 0.92132 0.94118 1.44739 1.14718 1.66611 1.08697 1.19413 0.90862 1.28632 0.97642 0.89935 1.25611 1.02229 1.01998 0.95698 1.69992 1.37124 1.50181 1.02494 0.85064 0.79107 0.77406 0.77674 1.21486 1.21880 1.19176 1.22004 0.92470 0.95037 0.90544 0.93181 0.85703 0.90147 0.77529 0.77571 0.91673 0.88295 0.89900 0.97867 0.94147 0.93925 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.90 113.37 1.12 2.12 16 2 O -0.35 -11.91 7.30 -56.79 -0.41 -12.32 16 3 C 0.52 18.61 5.10 70.19 0.36 18.97 16 4 O -0.52 -21.04 16.90 19.75 0.33 -20.70 16 5 C -0.16 -4.86 5.77 -19.99 -0.12 -4.98 16 6 C 0.14 2.89 7.29 22.67 0.17 3.05 16 7 F -0.13 -2.86 16.83 44.97 0.76 -2.11 16 8 C -0.10 -1.12 10.00 22.28 0.22 -0.90 16 9 C -0.06 -0.71 10.00 22.33 0.22 -0.48 16 10 C 0.07 1.51 7.30 22.42 0.16 1.68 16 11 F -0.12 -2.96 17.11 44.97 0.77 -2.19 16 12 C 0.11 3.19 5.62 22.88 0.13 3.32 16 13 O -0.33 -12.16 9.13 -90.15 -0.82 -12.99 16 14 C 0.09 3.29 3.48 31.78 0.11 3.40 16 15 H 0.09 3.10 7.95 -2.39 -0.02 3.08 16 16 C -0.12 -4.94 6.81 31.99 0.22 -4.72 16 17 C 0.16 7.76 5.89 86.85 0.51 8.27 16 18 N -0.62 -32.62 3.40 -691.22 -2.35 -34.97 16 19 C -0.24 -13.24 10.28 84.03 0.86 -12.38 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 22 N -0.95 -55.96 10.09 21.65 0.22 -55.74 16 23 Si 0.98 45.20 29.55 68.60 2.03 47.22 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.12 5.54 4.91 86.67 0.43 5.97 16 28 H 0.05 1.74 7.49 -2.39 -0.02 1.72 16 29 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.21 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.21 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.08 4.68 5.87 -2.39 -0.01 4.66 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.04 1.87 6.79 -2.39 -0.02 1.85 16 39 H 0.02 0.75 5.35 -2.39 -0.01 0.74 16 Total: -1.00 -74.09 335.88 6.48 -67.60 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.10 Total: 5.94 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 4.86 Total: 20.26 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.13 Total: -90.71 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.90 Total: -46.01 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.53 Total: -4.30 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.09 6.48 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234306401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.955 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds