Wall clock time and date at job start Tue Mar 31 2020 15:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34764 * 117.00033 * 2 1 4 4 O 1.21526 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.47309 * 119.99739 * 179.97438 * 3 2 1 6 6 C 1.39866 * 120.11220 * 359.97438 * 5 3 2 7 7 C 1.37611 * 119.96349 * 180.02562 * 6 5 3 8 8 C 1.39053 * 120.19017 * 0.02562 * 7 6 5 9 9 O 1.35763 * 119.89137 * 179.97438 * 8 7 6 10 10 C 1.42899 * 116.99436 * 5.83602 * 9 8 7 11 11 C 1.53519 * 114.16804 * 156.78492 * 10 9 8 12 12 N 1.47484 * 87.93037 * 87.61734 * 11 10 9 13 13 C 1.46899 * 110.99500 * 138.70302 * 12 11 10 14 14 C 1.50701 * 109.47146 * 169.99948 * 13 12 11 15 15 H 1.08007 * 119.99645 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47390 * 270.00449 * 18 16 14 20 20 H 1.48505 * 109.46998 * 30.00700 * 18 16 14 21 21 H 1.48505 * 109.46689 * 150.00123 * 18 16 14 22 22 C 1.47482 * 87.83438 * 27.01233 * 12 11 10 23 23 C 1.39005 * 120.22327 * 0.25200 * 8 7 6 24 24 F 1.35096 * 119.98717 * 179.72908 * 23 8 7 25 25 C 1.38210 * 120.02717 * 359.45008 * 23 8 7 26 26 F 1.35093 * 120.09226 * 180.29467 * 25 23 8 27 27 H 1.09010 * 109.46607 * 60.00178 * 1 2 3 28 28 H 1.09000 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47388 * 300.00576 * 1 2 3 30 30 H 1.07994 * 120.01442 * 0.02562 * 6 5 3 31 31 H 1.08003 * 119.90798 * 180.02562 * 7 6 5 32 32 H 1.08996 * 113.25950 * 23.83676 * 10 9 8 33 33 H 1.09003 * 113.47538 * 332.85433 * 11 10 9 34 34 H 1.09001 * 113.53040 * 202.39440 * 11 10 9 35 35 H 1.09005 * 109.47396 * 50.00123 * 13 12 11 36 36 H 1.09001 * 109.47556 * 289.99920 * 13 12 11 37 37 H 0.96997 * 119.99955 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.47376 * 87.75506 * 22 12 11 39 39 H 1.09001 * 113.47302 * 218.21940 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.2989 0.1062 0.0017 7 6 5.6730 0.1817 0.0027 8 6 6.3052 1.4202 0.0033 9 8 7.6612 1.4876 0.0048 10 6 8.3721 0.2547 -0.1236 11 6 9.7992 0.4059 -0.6687 12 7 10.2507 0.6116 0.7202 13 6 11.5105 -0.0997 0.9749 14 6 12.0665 0.3255 2.3095 15 1 11.5366 1.0512 2.9087 16 6 13.2510 -0.2126 2.7660 17 7 13.8959 -1.0966 2.0366 18 14 13.9404 0.3150 4.4201 19 1 14.8328 1.4870 4.2333 20 1 12.8236 0.6828 5.3272 21 1 14.7125 -0.8055 5.0146 22 6 9.0930 -0.1914 1.1562 23 6 5.5536 2.5895 0.0080 24 9 6.1728 3.7902 0.0140 25 6 4.1731 2.5243 0.0007 26 9 3.4413 3.6599 -0.0007 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8107 -0.8571 0.0017 31 1 6.2621 -0.7235 0.0031 32 1 7.7901 -0.5293 -0.6080 33 1 9.9313 1.2828 -1.3026 34 1 10.1906 -0.5048 -1.1222 35 1 12.2279 0.1393 0.1897 36 1 11.3260 -1.1739 0.9837 37 1 14.7293 -1.4749 2.3576 38 1 9.2951 -1.2620 1.1900 39 1 8.6266 0.1793 2.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234402475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:59 Heat of formation + Delta-G solvation = -128.211338 kcal Electronic energy + Delta-G solvation = -26994.874366 eV Core-core repulsion = 22541.417699 eV Total energy + Delta-G solvation = -4453.456667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.68028 -48.69215 -41.00644 -40.53446 -38.92704 -37.05695 -36.62668 -32.96292 -31.24005 -30.85486 -29.43166 -27.97700 -25.85355 -25.54739 -24.40519 -23.49914 -22.02532 -21.43798 -20.00489 -18.91903 -18.39736 -17.62705 -17.16420 -16.99691 -16.81841 -16.46766 -16.40664 -16.21791 -15.60138 -15.31909 -15.02920 -14.69346 -14.60862 -14.26031 -13.93930 -13.78187 -13.69737 -13.46916 -13.29603 -12.51485 -12.46247 -12.34474 -12.22266 -11.99669 -11.84581 -11.21731 -11.18867 -11.04662 -10.89169 -10.60399 -10.50581 -10.31242 -9.80760 -9.36062 -9.25980 -8.72232 -8.50122 -8.00705 -6.10545 -4.11812 0.08381 0.50476 2.03519 2.15821 2.51643 3.00647 3.29157 3.35076 3.39557 3.49340 3.94468 4.13892 4.21523 4.31132 4.36105 4.45243 4.58819 4.63548 4.73061 4.81098 4.90561 5.04980 5.21755 5.25061 5.40383 5.48368 5.55014 5.58129 5.70041 5.85064 5.91332 5.96392 6.04752 6.19365 6.44935 6.96703 7.04278 7.33213 7.53537 7.74950 7.99296 8.35087 8.95937 9.52949 11.00468 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002360 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.555291 B =11859.323624 C =12174.881357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.495 6.495 5 C -0.192 4.192 6 C 0.004 3.996 7 C -0.212 4.212 8 C 0.179 3.821 9 O -0.254 6.254 10 C 0.035 3.965 11 C 0.002 3.998 12 N -0.457 5.457 13 C 0.156 3.844 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.273 1.273 21 H -0.287 1.287 22 C -0.004 4.004 23 C 0.018 3.982 24 F -0.112 7.112 25 C 0.174 3.826 26 F -0.099 7.099 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.290 -2.218 -7.281 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.360 3.640 4 O -0.384 6.384 5 C -0.194 4.194 6 C -0.014 4.014 7 C -0.231 4.231 8 C 0.129 3.871 9 O -0.164 6.164 10 C -0.021 4.021 11 C -0.127 4.127 12 N -0.180 5.180 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.540 5.540 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.134 4.134 23 C -0.003 4.003 24 F -0.091 7.091 25 C 0.152 3.848 26 F -0.077 7.077 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.051 -1.099 -6.982 25.068 hybrid contribution 0.343 -0.322 0.613 0.773 sum -23.708 -1.421 -6.368 24.590 Atomic orbital electron populations 1.23315 0.75506 1.03928 1.02833 1.86518 1.23852 1.32111 1.84554 1.20558 0.88206 0.81848 0.73398 1.90924 1.66503 1.35724 1.45223 1.18722 0.90564 0.92497 1.17642 1.21172 0.92559 0.97741 0.89934 1.21314 0.95382 0.97044 1.09352 1.19174 0.84776 0.92155 0.90983 1.86281 1.12570 1.33336 1.84226 1.24028 0.93075 0.84321 1.00684 1.24028 0.90016 1.02395 0.96259 1.69152 1.03126 1.42477 1.03228 1.20316 0.86443 0.91948 0.98256 1.21081 1.06430 1.24159 1.02778 0.91786 1.25002 0.96789 0.95055 0.97830 1.69941 1.16853 1.29282 1.37904 0.86459 0.79062 0.78126 0.83577 1.20540 1.19792 1.21266 1.24278 0.93623 0.98304 0.97162 1.16482 0.87816 0.80935 1.15111 1.91586 1.82016 1.41010 1.94453 1.17166 0.86684 0.82321 0.98584 1.91637 1.76178 1.47351 1.92494 0.91698 0.87733 0.91662 0.82422 0.82312 0.88663 0.89379 0.89855 0.95042 0.97690 0.92846 0.89976 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.35 -3.02 9.81 -40.67 -0.40 -3.42 16 3 C 0.52 5.72 7.88 34.42 0.27 5.99 16 4 O -0.50 -6.91 15.12 -19.29 -0.29 -7.20 16 5 C -0.19 -2.02 5.88 -104.92 -0.62 -2.64 16 6 C 0.00 0.03 9.60 -39.20 -0.38 -0.34 16 7 C -0.21 -1.85 9.00 -39.51 -0.36 -2.21 16 8 C 0.18 2.17 6.69 -39.00 -0.26 1.91 16 9 O -0.25 -3.72 10.03 -19.00 -0.19 -3.91 16 10 C 0.04 0.46 4.05 -26.20 -0.11 0.36 16 11 C 0.00 0.04 7.52 -7.54 -0.06 -0.02 16 12 N -0.46 -9.43 6.32 -246.09 -1.55 -10.99 16 13 C 0.16 3.88 4.57 -4.98 -0.02 3.86 16 14 C -0.51 -14.13 9.39 -34.44 -0.32 -14.45 16 15 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.00 -0.07 7.55 -7.54 -0.06 -0.13 16 23 C 0.02 0.23 7.30 -39.31 -0.29 -0.05 16 24 F -0.11 -1.72 17.01 2.25 0.04 -1.68 16 25 C 0.17 2.18 7.29 -38.92 -0.28 1.89 16 26 F -0.10 -1.41 15.45 2.25 0.03 -1.37 16 27 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.16 0.80 7.60 -52.49 -0.40 0.40 16 31 H 0.16 1.04 5.87 -52.48 -0.31 0.73 16 32 H 0.10 0.87 5.89 -51.93 -0.31 0.56 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 35 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.01 0.13 7.30 -51.93 -0.38 -0.24 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.08 1.27 7.42 -51.93 -0.39 0.89 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -33.26 347.53 -7.18 -40.44 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -4.27 Total: -5.11 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.50 Total: -3.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.82 Total: -36.39 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.88 Total: -14.53 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.07 Total: -3.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.26 -7.18 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234402475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.776 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds