Wall clock time and date at job start Tue Mar 31 2020 15:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34764 * 117.00033 * 2 1 4 4 O 1.21526 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.47309 * 119.99739 * 179.97438 * 3 2 1 6 6 C 1.39866 * 120.11220 * 359.97438 * 5 3 2 7 7 C 1.37611 * 119.96349 * 180.02562 * 6 5 3 8 8 C 1.39053 * 120.19017 * 0.02562 * 7 6 5 9 9 O 1.35763 * 119.89137 * 179.97438 * 8 7 6 10 10 C 1.42899 * 116.99436 * 5.83602 * 9 8 7 11 11 C 1.53519 * 114.16804 * 156.78492 * 10 9 8 12 12 N 1.47484 * 87.93037 * 87.61734 * 11 10 9 13 13 C 1.46899 * 110.99500 * 138.70302 * 12 11 10 14 14 C 1.50701 * 109.47146 * 169.99948 * 13 12 11 15 15 H 1.08007 * 119.99645 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47390 * 270.00449 * 18 16 14 20 20 H 1.48505 * 109.46998 * 30.00700 * 18 16 14 21 21 H 1.48505 * 109.46689 * 150.00123 * 18 16 14 22 22 C 1.47482 * 87.83438 * 27.01233 * 12 11 10 23 23 C 1.39005 * 120.22327 * 0.25200 * 8 7 6 24 24 F 1.35096 * 119.98717 * 179.72908 * 23 8 7 25 25 C 1.38210 * 120.02717 * 359.45008 * 23 8 7 26 26 F 1.35093 * 120.09226 * 180.29467 * 25 23 8 27 27 H 1.09010 * 109.46607 * 60.00178 * 1 2 3 28 28 H 1.09000 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47388 * 300.00576 * 1 2 3 30 30 H 1.07994 * 120.01442 * 0.02562 * 6 5 3 31 31 H 1.08003 * 119.90798 * 180.02562 * 7 6 5 32 32 H 1.08996 * 113.25950 * 23.83676 * 10 9 8 33 33 H 1.09003 * 113.47538 * 332.85433 * 11 10 9 34 34 H 1.09001 * 113.53040 * 202.39440 * 11 10 9 35 35 H 1.09005 * 109.47396 * 50.00123 * 13 12 11 36 36 H 1.09001 * 109.47556 * 289.99920 * 13 12 11 37 37 H 0.96997 * 119.99955 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.47376 * 87.75506 * 22 12 11 39 39 H 1.09001 * 113.47302 * 218.21940 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.2989 0.1062 0.0017 7 6 5.6730 0.1817 0.0027 8 6 6.3052 1.4202 0.0033 9 8 7.6612 1.4876 0.0048 10 6 8.3721 0.2547 -0.1236 11 6 9.7992 0.4059 -0.6687 12 7 10.2507 0.6116 0.7202 13 6 11.5105 -0.0997 0.9749 14 6 12.0665 0.3255 2.3095 15 1 11.5366 1.0512 2.9087 16 6 13.2510 -0.2126 2.7660 17 7 13.8959 -1.0966 2.0366 18 14 13.9404 0.3150 4.4201 19 1 14.8328 1.4870 4.2333 20 1 12.8236 0.6828 5.3272 21 1 14.7125 -0.8055 5.0146 22 6 9.0930 -0.1914 1.1562 23 6 5.5536 2.5895 0.0080 24 9 6.1728 3.7902 0.0140 25 6 4.1731 2.5243 0.0007 26 9 3.4413 3.6599 -0.0007 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8107 -0.8571 0.0017 31 1 6.2621 -0.7235 0.0031 32 1 7.7901 -0.5293 -0.6080 33 1 9.9313 1.2828 -1.3026 34 1 10.1906 -0.5048 -1.1222 35 1 12.2279 0.1393 0.1897 36 1 11.3260 -1.1739 0.9837 37 1 14.7293 -1.4749 2.3576 38 1 9.2951 -1.2620 1.1900 39 1 8.6266 0.1793 2.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234402475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:59 Heat of formation + Delta-G solvation = -151.415623 kcal Electronic energy + Delta-G solvation = -26995.880579 eV Core-core repulsion = 22541.417699 eV Total energy + Delta-G solvation = -4454.462881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.70122 -49.74406 -41.98058 -41.46596 -40.01582 -38.04488 -37.48256 -35.02084 -32.20756 -31.68103 -31.04655 -28.57900 -27.44956 -26.86669 -25.37043 -24.53481 -23.43709 -22.50437 -21.11757 -19.84495 -19.31986 -18.63479 -18.49898 -18.02438 -17.90088 -17.69246 -17.30978 -17.15222 -16.99316 -16.49236 -16.29320 -16.09121 -15.61914 -15.41175 -15.06152 -14.96626 -14.93189 -14.39493 -14.10788 -13.95517 -13.58174 -13.42914 -13.32526 -13.07373 -12.98601 -12.78755 -12.60779 -12.33148 -12.18657 -11.83386 -11.76372 -11.58389 -11.51344 -11.26787 -10.61861 -10.11322 -9.67665 -9.56009 -8.23755 -6.32796 -0.77190 -0.32058 1.19871 1.39202 1.39794 1.40521 1.51561 1.59166 2.20122 2.38658 2.60909 3.07244 3.08699 3.20391 3.28973 3.40400 3.43609 3.63595 3.75193 3.86115 4.25074 4.33772 4.37060 4.39148 4.48014 4.59731 4.64238 4.74010 4.74971 4.77993 4.81864 4.85888 4.97135 5.04875 5.18645 5.26228 5.58273 5.80227 6.02792 6.11498 6.45893 6.54314 6.81224 7.36692 8.86746 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002360 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.555291 B =11859.323624 C =12174.881357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.344 6.344 3 C 0.517 3.483 4 O -0.532 6.532 5 C -0.191 4.191 6 C 0.030 3.970 7 C -0.192 4.192 8 C 0.167 3.833 9 O -0.284 6.284 10 C 0.064 3.936 11 C -0.002 4.002 12 N -0.496 5.496 13 C 0.173 3.827 14 C -0.527 4.527 15 H 0.051 0.949 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.276 1.276 20 H -0.269 1.269 21 H -0.277 1.277 22 C -0.008 4.008 23 C -0.006 4.006 24 F -0.135 7.135 25 C 0.157 3.843 26 F -0.117 7.117 27 H 0.062 0.938 28 H 0.141 0.859 29 H 0.061 0.939 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.152 0.848 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.002 0.998 36 H -0.005 1.005 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.899 -4.742 -7.236 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.260 6.260 3 C 0.363 3.637 4 O -0.423 6.423 5 C -0.194 4.194 6 C 0.012 3.988 7 C -0.210 4.210 8 C 0.118 3.882 9 O -0.195 6.195 10 C 0.008 3.992 11 C -0.131 4.131 12 N -0.220 5.220 13 C 0.046 3.954 14 C -0.566 4.566 15 H 0.070 0.930 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.202 1.202 20 H -0.193 1.193 21 H -0.202 1.202 22 C -0.138 4.138 23 C -0.026 4.026 24 F -0.113 7.113 25 C 0.136 3.864 26 F -0.095 7.095 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.217 0.783 31 H 0.211 0.789 32 H 0.169 0.831 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.020 0.980 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.684 -3.635 -6.944 26.853 hybrid contribution 0.715 0.428 0.566 1.008 sum -24.969 -3.207 -6.378 25.969 Atomic orbital electron populations 1.23647 0.73828 1.06233 1.02636 1.86506 1.25402 1.30320 1.83788 1.20677 0.88351 0.82096 0.72529 1.90915 1.67282 1.37121 1.47005 1.18896 0.90742 0.92541 1.17206 1.21600 0.92006 0.98178 0.86976 1.21662 0.95831 0.96486 1.07002 1.19331 0.83845 0.92971 0.92023 1.86241 1.14065 1.34318 1.84922 1.23851 0.92451 0.84968 0.97895 1.24114 0.92016 1.03114 0.93859 1.69034 1.02514 1.43324 1.07078 1.19959 0.88114 0.91488 0.95868 1.21411 1.06951 1.24035 1.04184 0.93046 1.25828 0.97058 0.95012 1.01408 1.70035 1.17270 1.30140 1.39539 0.85459 0.78376 0.77946 0.79306 1.20196 1.19308 1.20208 1.24340 0.92352 0.98450 0.98617 1.16791 0.88285 0.80759 1.16801 1.91515 1.82466 1.42521 1.94845 1.17403 0.86495 0.82680 0.99862 1.91583 1.76528 1.48538 1.92874 0.91881 0.84121 0.92022 0.78319 0.78934 0.83101 0.89746 0.88127 0.97985 0.98701 0.92548 0.88752 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.34 -4.80 9.81 -56.75 -0.56 -5.35 16 3 C 0.52 10.61 7.88 70.21 0.55 11.16 16 4 O -0.53 -14.73 15.12 19.75 0.30 -14.44 16 5 C -0.19 -3.64 5.88 -20.06 -0.12 -3.76 16 6 C 0.03 0.34 9.60 22.52 0.22 0.55 16 7 C -0.19 -2.48 9.00 22.32 0.20 -2.28 16 8 C 0.17 3.74 6.69 22.65 0.15 3.89 16 9 O -0.28 -7.91 10.03 -90.90 -0.91 -8.82 16 10 C 0.06 1.50 4.05 30.94 0.13 1.62 16 11 C 0.00 -0.06 7.52 83.58 0.63 0.56 16 12 N -0.50 -20.59 6.32 -932.87 -5.89 -26.48 16 13 C 0.17 8.76 4.57 85.56 0.39 9.16 16 14 C -0.53 -30.03 9.39 25.60 0.24 -29.79 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.30 5.46 84.66 0.46 0.77 16 17 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 18 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 C -0.01 -0.26 7.55 83.58 0.63 0.37 16 23 C -0.01 -0.15 7.30 22.45 0.16 0.02 16 24 F -0.13 -4.35 17.01 44.97 0.77 -3.59 16 25 C 0.16 3.92 7.29 22.70 0.17 4.09 16 26 F -0.12 -3.50 15.45 44.97 0.69 -2.80 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.20 0.68 7.60 -2.91 -0.02 0.66 16 31 H 0.19 1.20 5.87 -2.91 -0.02 1.18 16 32 H 0.15 1.87 5.89 -2.39 -0.01 1.86 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.10 2.71 7.91 -2.39 -0.02 2.69 16 35 H 0.00 0.11 8.08 -2.38 -0.02 0.09 16 36 H 0.00 -0.24 7.30 -2.39 -0.02 -0.26 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.09 2.72 7.42 -2.39 -0.02 2.71 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -76.74 347.53 2.82 -73.91 By element: Atomic # 1 Polarization: -3.52 SS G_CDS: 1.10 Total: -2.42 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.01 Total: -2.18 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -5.61 Total: -80.67 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.17 Total: -28.61 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.46 Total: -6.39 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.74 2.82 -73.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234402475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.502 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds