Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34764 * 116.99711 * 2 1 4 4 O 1.21524 * 120.00387 * 359.97438 * 3 2 1 5 5 C 1.47322 * 119.99876 * 179.97438 * 3 2 1 6 6 C 1.39873 * 120.10579 * 0.02562 * 5 3 2 7 7 C 1.37615 * 119.96012 * 179.71527 * 6 5 3 8 8 C 1.39053 * 120.19015 * 0.51848 * 7 6 5 9 9 O 1.35757 * 119.89512 * 179.76003 * 8 7 6 10 10 C 1.42904 * 116.99216 * 354.61750 * 9 8 7 11 11 H 1.08996 * 110.78341 * 321.74608 * 10 9 8 12 12 C 1.55157 * 110.71595 * 198.50713 * 10 9 8 13 13 C 1.55126 * 101.48752 * 205.97223 * 12 10 9 14 14 N 1.47428 * 104.72325 * 37.29661 * 13 12 10 15 15 C 1.36935 * 125.64959 * 155.82385 * 14 13 12 16 16 H 1.07994 * 119.99722 * 179.69362 * 15 14 13 17 17 C 1.38810 * 119.99767 * 359.68603 * 15 14 13 18 18 N 1.31617 * 120.00453 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99504 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 269.99849 * 19 17 15 21 21 H 1.48497 * 109.47551 * 30.00365 * 19 17 15 22 22 H 1.48502 * 109.46876 * 150.00121 * 19 17 15 23 23 C 1.47024 * 108.70059 * 335.55378 * 14 13 12 24 24 C 1.39007 * 120.22075 * 359.47779 * 8 7 6 25 25 F 1.35098 * 119.98631 * 180.23735 * 24 8 7 26 26 C 1.38210 * 120.02897 * 0.26413 * 24 8 7 27 27 F 1.35098 * 120.09024 * 180.02562 * 26 24 8 28 28 H 1.08997 * 109.46923 * 60.00249 * 1 2 3 29 29 H 1.09005 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47354 * 300.00074 * 1 2 3 31 31 H 1.07999 * 120.02081 * 359.97438 * 6 5 3 32 32 H 1.07995 * 119.90824 * 180.27232 * 7 6 5 33 33 H 1.09000 * 111.00782 * 324.20955 * 12 10 9 34 34 H 1.08995 * 111.00510 * 88.02210 * 12 10 9 35 35 H 1.09009 * 110.49645 * 278.45521 * 13 12 10 36 36 H 1.09002 * 110.34539 * 156.06299 * 13 12 10 37 37 H 0.96992 * 120.00308 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88244 * 120.70526 * 23 14 13 39 39 H 1.09003 * 109.88464 * 241.72020 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5349 1.2779 0.0006 6 6 4.2989 0.1063 0.0006 7 6 5.6730 0.1818 -0.0048 8 6 6.3053 1.4203 0.0006 9 8 7.6611 1.4878 0.0002 10 6 8.3720 0.2534 0.1135 11 1 7.8677 -0.4213 0.8052 12 6 9.8370 0.5026 0.5597 13 6 10.5535 -0.7444 -0.0216 14 7 9.8909 -0.9878 -1.3160 15 6 10.4403 -1.6488 -2.3819 16 1 9.8687 -1.7800 -3.2888 17 6 11.7319 -2.1502 -2.2969 18 7 12.4284 -1.9907 -1.1916 19 14 12.4815 -3.0513 -3.7514 20 1 12.1778 -4.5010 -3.6455 21 1 11.9097 -2.5166 -5.0132 22 1 13.9532 -2.8526 -3.7516 23 6 8.5402 -0.4088 -1.2703 24 6 5.5536 2.5896 0.0006 25 9 6.1728 3.7903 0.0010 26 6 4.1730 2.5244 0.0006 27 9 3.4413 3.6600 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8108 -0.8571 0.0006 32 1 6.2620 -0.7233 -0.0093 33 1 10.2279 1.4212 0.1222 34 1 9.9158 0.5258 1.6466 35 1 10.4230 -1.6020 0.6385 36 1 11.6132 -0.5374 -0.1709 37 1 13.3310 -2.3407 -1.1323 38 1 8.4310 0.3396 -2.0552 39 1 7.7956 -1.1942 -1.4009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234403317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = -145.277902 kcal Electronic energy + Delta-G solvation = -27511.687284 eV Core-core repulsion = 23057.490555 eV Total energy + Delta-G solvation = -4454.196729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.61946 -48.64000 -40.84545 -40.20772 -37.98367 -36.69772 -36.30025 -32.53432 -31.06312 -30.76248 -29.42441 -28.01844 -27.53148 -25.00826 -24.09086 -23.28438 -21.68572 -20.49419 -20.39893 -18.89252 -18.37741 -17.78102 -17.10669 -17.01516 -16.91182 -16.67097 -16.37902 -16.17569 -15.34188 -15.05020 -14.86669 -14.63287 -14.44571 -14.14362 -13.90244 -13.61199 -13.44070 -13.20313 -12.65834 -12.49722 -12.38783 -12.21420 -11.94770 -11.90377 -11.54559 -11.12050 -11.11604 -10.89515 -10.83464 -10.66646 -10.49858 -10.18117 -10.00510 -9.75208 -9.16218 -8.79561 -8.63461 -7.02268 -5.79539 -3.22812 0.18426 0.60366 2.12581 2.24105 2.71038 3.11086 3.33219 3.38737 3.40611 3.61561 4.03221 4.25746 4.34759 4.37071 4.47543 4.72590 4.79180 4.87110 4.97315 5.04725 5.12326 5.29428 5.33912 5.37266 5.51769 5.55590 5.65185 5.69671 5.98194 6.01637 6.14119 6.23127 6.31256 6.37956 6.44882 7.16049 7.28633 7.40603 7.47336 7.68149 8.19029 9.06314 9.66498 10.27740 11.24788 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002775 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.979876 B =10089.425552 C =10985.056697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.516 3.484 4 O -0.497 6.497 5 C -0.193 4.193 6 C 0.005 3.995 7 C -0.209 4.209 8 C 0.181 3.819 9 O -0.282 6.282 10 C 0.062 3.938 11 H 0.086 0.914 12 C -0.134 4.134 13 C 0.152 3.848 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.918 3.082 20 H -0.288 1.288 21 H -0.280 1.280 22 H -0.289 1.289 23 C 0.116 3.884 24 C 0.013 3.987 25 F -0.115 7.115 26 C 0.172 3.828 27 F -0.100 7.100 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.117 0.883 37 H 0.255 0.745 38 H 0.038 0.962 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.781 3.311 5.591 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.386 6.386 5 C -0.195 4.195 6 C -0.014 4.014 7 C -0.227 4.227 8 C 0.131 3.869 9 O -0.192 6.192 10 C 0.007 3.993 11 H 0.104 0.896 12 C -0.173 4.173 13 C 0.027 3.973 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.748 3.252 20 H -0.215 1.215 21 H -0.206 1.206 22 H -0.215 1.215 23 C -0.010 4.010 24 C -0.008 4.008 25 F -0.094 7.094 26 C 0.151 3.849 27 F -0.078 7.078 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.664 3.762 5.506 19.820 hybrid contribution 0.065 -0.182 -0.713 0.738 sum -18.600 3.580 4.794 19.538 Atomic orbital electron populations 1.23306 0.75579 1.03912 1.02770 1.86527 1.23795 1.32112 1.84525 1.20566 0.88214 0.81817 0.73315 1.90915 1.66527 1.35730 1.45389 1.18712 0.90517 0.92495 1.17815 1.21197 0.92587 0.97743 0.89838 1.21445 0.95453 0.97201 1.08641 1.19146 0.84935 0.92020 0.90749 1.86261 1.12785 1.35492 1.84709 1.24010 0.93497 0.82736 0.99089 0.89580 1.23289 0.90875 1.02778 1.00343 1.22099 1.00162 0.90177 0.84862 1.44366 1.09614 1.65652 1.13098 1.19071 0.96730 1.27702 0.92007 0.90249 1.24805 0.96780 1.01027 0.97755 1.69723 1.11203 1.50554 1.25568 0.86024 0.78439 0.79399 0.81339 1.21482 1.20573 1.21517 1.21760 0.90006 0.95841 0.93409 1.16481 0.87825 0.80835 1.15627 1.91560 1.82088 1.41154 1.94578 1.17148 0.86676 0.82264 0.98802 1.91628 1.76230 1.47389 1.92570 0.91705 0.87751 0.91726 0.82417 0.82194 0.90438 0.91098 0.96251 0.86565 0.93450 0.94455 0.95163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.39 9.81 -40.66 -0.40 -3.79 16 3 C 0.52 6.23 7.88 34.43 0.27 6.50 16 4 O -0.50 -7.31 15.12 -19.28 -0.29 -7.60 16 5 C -0.19 -2.26 5.88 -104.92 -0.62 -2.88 16 6 C 0.00 0.05 9.60 -39.20 -0.38 -0.33 16 7 C -0.21 -2.30 8.75 -39.51 -0.35 -2.64 16 8 C 0.18 2.47 6.64 -38.99 -0.26 2.21 16 9 O -0.28 -4.44 9.72 -18.98 -0.18 -4.62 16 10 C 0.06 1.00 2.76 -24.90 -0.07 0.93 16 11 H 0.09 1.17 6.59 -51.93 -0.34 0.83 16 12 C -0.13 -2.36 6.82 -24.47 -0.17 -2.53 16 13 C 0.15 3.39 5.91 -2.41 -0.01 3.38 16 14 N -0.60 -14.43 3.39 -169.93 -0.58 -15.01 16 15 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -25.59 10.08 55.49 0.56 -25.03 16 19 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.12 2.23 6.50 -3.06 -0.02 2.21 16 24 C 0.01 0.19 7.30 -39.31 -0.29 -0.10 16 25 F -0.12 -1.78 17.01 2.25 0.04 -1.75 16 26 C 0.17 2.31 7.29 -38.92 -0.28 2.03 16 27 F -0.10 -1.49 15.45 2.25 0.03 -1.45 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.10 7.60 -52.49 -0.40 0.70 16 32 H 0.16 1.63 5.28 -52.49 -0.28 1.36 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.12 2.97 5.86 -51.93 -0.30 2.66 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.04 0.75 8.06 -51.93 -0.42 0.34 16 39 H 0.03 0.54 7.42 -51.93 -0.39 0.16 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -30.75 338.89 -6.29 -37.05 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.21 Total: -2.69 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.35 Total: 3.61 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.02 Total: -40.04 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.87 Total: -16.01 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.07 Total: -3.20 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.75 -6.29 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234403317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.232 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds