Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34764 * 116.99711 * 2 1 4 4 O 1.21524 * 120.00387 * 359.97438 * 3 2 1 5 5 C 1.47322 * 119.99876 * 179.97438 * 3 2 1 6 6 C 1.39873 * 120.10579 * 0.02562 * 5 3 2 7 7 C 1.37615 * 119.96012 * 179.71527 * 6 5 3 8 8 C 1.39053 * 120.19015 * 0.51848 * 7 6 5 9 9 O 1.35757 * 119.89512 * 179.76003 * 8 7 6 10 10 C 1.42904 * 116.99216 * 354.61750 * 9 8 7 11 11 H 1.08996 * 110.78341 * 321.74608 * 10 9 8 12 12 C 1.55157 * 110.71595 * 198.50713 * 10 9 8 13 13 C 1.55126 * 101.48752 * 205.97223 * 12 10 9 14 14 N 1.47428 * 104.72325 * 37.29661 * 13 12 10 15 15 C 1.36935 * 125.64959 * 155.82385 * 14 13 12 16 16 H 1.07994 * 119.99722 * 179.69362 * 15 14 13 17 17 C 1.38810 * 119.99767 * 359.68603 * 15 14 13 18 18 N 1.31617 * 120.00453 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99504 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 269.99849 * 19 17 15 21 21 H 1.48497 * 109.47551 * 30.00365 * 19 17 15 22 22 H 1.48502 * 109.46876 * 150.00121 * 19 17 15 23 23 C 1.47024 * 108.70059 * 335.55378 * 14 13 12 24 24 C 1.39007 * 120.22075 * 359.47779 * 8 7 6 25 25 F 1.35098 * 119.98631 * 180.23735 * 24 8 7 26 26 C 1.38210 * 120.02897 * 0.26413 * 24 8 7 27 27 F 1.35098 * 120.09024 * 180.02562 * 26 24 8 28 28 H 1.08997 * 109.46923 * 60.00249 * 1 2 3 29 29 H 1.09005 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47354 * 300.00074 * 1 2 3 31 31 H 1.07999 * 120.02081 * 359.97438 * 6 5 3 32 32 H 1.07995 * 119.90824 * 180.27232 * 7 6 5 33 33 H 1.09000 * 111.00782 * 324.20955 * 12 10 9 34 34 H 1.08995 * 111.00510 * 88.02210 * 12 10 9 35 35 H 1.09009 * 110.49645 * 278.45521 * 13 12 10 36 36 H 1.09002 * 110.34539 * 156.06299 * 13 12 10 37 37 H 0.96992 * 120.00308 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88244 * 120.70526 * 23 14 13 39 39 H 1.09003 * 109.88464 * 241.72020 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5349 1.2779 0.0006 6 6 4.2989 0.1063 0.0006 7 6 5.6730 0.1818 -0.0048 8 6 6.3053 1.4203 0.0006 9 8 7.6611 1.4878 0.0002 10 6 8.3720 0.2534 0.1135 11 1 7.8677 -0.4213 0.8052 12 6 9.8370 0.5026 0.5597 13 6 10.5535 -0.7444 -0.0216 14 7 9.8909 -0.9878 -1.3160 15 6 10.4403 -1.6488 -2.3819 16 1 9.8687 -1.7800 -3.2888 17 6 11.7319 -2.1502 -2.2969 18 7 12.4284 -1.9907 -1.1916 19 14 12.4815 -3.0513 -3.7514 20 1 12.1778 -4.5010 -3.6455 21 1 11.9097 -2.5166 -5.0132 22 1 13.9532 -2.8526 -3.7516 23 6 8.5402 -0.4088 -1.2703 24 6 5.5536 2.5896 0.0006 25 9 6.1728 3.7903 0.0010 26 6 4.1730 2.5244 0.0006 27 9 3.4413 3.6600 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8108 -0.8571 0.0006 32 1 6.2620 -0.7233 -0.0093 33 1 10.2279 1.4212 0.1222 34 1 9.9158 0.5258 1.6466 35 1 10.4230 -1.6020 0.6385 36 1 11.6132 -0.5374 -0.1709 37 1 13.3310 -2.3407 -1.1323 38 1 8.4310 0.3396 -2.0552 39 1 7.7956 -1.1942 -1.4009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234403317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = -162.730017 kcal Electronic energy + Delta-G solvation = -27512.444065 eV Core-core repulsion = 23057.490555 eV Total energy + Delta-G solvation = -4454.953509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.71041 -49.75229 -41.81488 -41.25376 -39.16885 -37.83117 -37.47925 -34.34105 -32.15685 -31.72966 -31.07191 -29.22353 -28.50708 -26.64824 -25.23496 -24.31085 -22.68577 -22.17778 -21.67927 -19.94055 -19.39184 -19.11964 -18.56465 -18.06536 -17.89015 -17.68919 -17.32263 -17.20836 -16.80839 -16.53454 -16.14233 -15.91626 -15.58507 -15.31938 -14.99672 -14.92626 -14.39895 -14.37134 -14.03035 -13.76576 -13.52494 -13.39939 -13.11675 -13.00315 -12.85350 -12.82591 -12.63915 -12.22607 -12.02990 -11.85733 -11.83563 -11.75508 -11.73480 -11.42670 -10.75448 -10.13187 -9.69560 -8.92452 -7.79042 -5.23818 -0.78442 -0.34244 1.18747 1.40072 1.49881 1.50830 1.58759 1.63137 2.18581 2.49165 2.61461 3.04926 3.32686 3.37016 3.39878 3.48597 3.63497 3.66448 3.81871 3.92095 4.00695 4.29386 4.35613 4.36756 4.56861 4.62977 4.70638 4.73836 4.76027 4.82246 4.85839 4.93844 4.98114 5.18043 5.26462 5.46423 5.58582 5.76837 6.02663 6.29656 6.53393 7.08979 7.74671 8.35654 9.22936 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002775 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.979876 B =10089.425552 C =10985.056697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.519 3.481 4 O -0.530 6.530 5 C -0.190 4.190 6 C 0.030 3.970 7 C -0.196 4.196 8 C 0.168 3.832 9 O -0.297 6.297 10 C 0.079 3.921 11 H 0.121 0.879 12 C -0.124 4.124 13 C 0.154 3.846 14 N -0.624 5.624 15 C -0.239 4.239 16 H 0.082 0.918 17 C -0.062 4.062 18 N -0.947 5.947 19 Si 0.979 3.021 20 H -0.284 1.284 21 H -0.272 1.272 22 H -0.295 1.295 23 C 0.112 3.888 24 C 0.000 4.000 25 F -0.131 7.131 26 C 0.160 3.840 27 F -0.114 7.114 28 H 0.062 0.938 29 H 0.139 0.861 30 H 0.064 0.936 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.009 0.991 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.024 0.976 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.775 1.647 5.790 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.365 3.635 4 O -0.421 6.421 5 C -0.193 4.193 6 C 0.012 3.988 7 C -0.215 4.215 8 C 0.119 3.881 9 O -0.209 6.209 10 C 0.024 3.976 11 H 0.139 0.861 12 C -0.163 4.163 13 C 0.029 3.971 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.211 1.211 21 H -0.197 1.197 22 H -0.222 1.222 23 C -0.013 4.013 24 C -0.021 4.021 25 F -0.109 7.109 26 C 0.139 3.861 27 F -0.092 7.092 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.213 0.787 32 H 0.195 0.805 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.027 0.973 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.700 2.098 5.706 21.574 hybrid contribution 0.533 0.325 -0.786 1.004 sum -20.167 2.422 4.920 20.899 Atomic orbital electron populations 1.23649 0.73768 1.06206 1.02715 1.86516 1.25482 1.30404 1.83769 1.20626 0.88247 0.82100 0.72552 1.90908 1.67198 1.36997 1.46985 1.18865 0.90794 0.92448 1.17153 1.21543 0.91830 0.98333 0.87127 1.21626 0.96026 0.96464 1.07335 1.19272 0.84048 0.92797 0.91949 1.86219 1.14078 1.35091 1.85494 1.23778 0.93052 0.83191 0.97581 0.86141 1.23082 0.91599 0.99682 1.01903 1.21847 0.98844 0.91827 0.84609 1.44637 1.11836 1.65632 1.12994 1.19414 0.97056 1.27365 0.92971 0.90007 1.25586 0.97408 1.02402 1.00132 1.69972 1.11055 1.51527 1.27115 0.85075 0.77045 0.78292 0.78885 1.21069 1.19693 1.22170 1.21930 0.88163 0.96066 0.95178 1.16653 0.88144 0.80592 1.16731 1.91512 1.82408 1.42181 1.94842 1.17334 0.86489 0.82588 0.99698 1.91589 1.76485 1.48321 1.92847 0.91919 0.84254 0.91754 0.78736 0.80547 0.91602 0.87967 0.97308 0.90262 0.94132 0.95767 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.54 9.81 -56.75 -0.56 -6.09 16 3 C 0.52 11.48 7.88 70.21 0.55 12.04 16 4 O -0.53 -15.15 15.12 19.76 0.30 -14.85 16 5 C -0.19 -4.02 5.88 -20.06 -0.12 -4.14 16 6 C 0.03 0.45 9.60 22.52 0.22 0.66 16 7 C -0.20 -3.58 8.75 22.32 0.20 -3.38 16 8 C 0.17 4.23 6.64 22.65 0.15 4.38 16 9 O -0.30 -8.84 9.72 -90.83 -0.88 -9.73 16 10 C 0.08 2.35 2.76 31.78 0.09 2.44 16 11 H 0.12 2.77 6.59 -2.39 -0.02 2.75 16 12 C -0.12 -4.21 6.82 32.06 0.22 -3.99 16 13 C 0.15 6.90 5.91 86.93 0.51 7.41 16 14 N -0.62 -29.82 3.39 -691.52 -2.35 -32.17 16 15 C -0.24 -12.71 10.27 84.03 0.86 -11.85 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 18 N -0.95 -53.71 10.08 21.65 0.22 -53.49 16 19 Si 0.98 43.79 29.55 68.60 2.03 45.81 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 23 C 0.11 4.11 6.50 86.73 0.56 4.68 16 24 C 0.00 -0.01 7.30 22.45 0.16 0.15 16 25 F -0.13 -4.10 17.01 44.97 0.77 -3.34 16 26 C 0.16 4.17 7.29 22.70 0.17 4.34 16 27 F -0.11 -3.43 15.45 44.97 0.69 -2.74 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.14 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.20 1.58 7.60 -2.91 -0.02 1.56 16 32 H 0.18 2.71 5.28 -2.91 -0.02 2.70 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.08 4.18 5.86 -2.39 -0.01 4.16 16 37 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.02 0.96 8.06 -2.39 -0.02 0.94 16 39 H 0.05 1.71 7.42 -2.39 -0.02 1.70 16 Total: -1.00 -68.83 338.89 6.56 -62.27 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.11 Total: 2.99 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.24 Total: 11.33 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.13 Total: -85.66 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.14 Total: -30.67 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.46 Total: -6.07 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.83 6.56 -62.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234403317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.462 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds