Wall clock time and date at job start Tue Mar 31 2020 15:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34752 * 117.00137 * 2 1 4 4 O 1.21508 * 119.99246 * 359.97438 * 3 2 1 5 5 C 1.47420 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.39999 * 120.16660 * 90.02197 * 5 3 2 7 7 F 1.35096 * 120.05352 * 359.97438 * 6 5 3 8 8 C 1.38151 * 119.89676 * 179.97438 * 6 5 3 9 9 C 1.38326 * 120.24886 * 359.73768 * 8 6 5 10 10 C 1.38670 * 120.33961 * 0.52108 * 9 8 6 11 11 O 1.36017 * 119.95128 * 179.75798 * 10 9 8 12 12 C 1.42894 * 117.00084 * 354.57275 * 11 10 9 13 13 H 1.08997 * 110.77873 * 321.68036 * 12 11 10 14 14 C 1.55158 * 110.71955 * 198.44459 * 12 11 10 15 15 C 1.55129 * 101.48564 * 205.96776 * 14 12 11 16 16 N 1.47423 * 104.72043 * 37.29789 * 15 14 12 17 17 C 1.36936 * 125.64541 * 155.82083 * 16 15 14 18 18 H 1.08006 * 120.00020 * 209.84875 * 17 16 15 19 19 C 1.38813 * 120.00570 * 29.84485 * 17 16 15 20 20 N 1.31610 * 120.00770 * 201.01844 * 19 17 16 21 21 Si 1.86801 * 119.99378 * 21.01852 * 19 17 16 22 22 H 1.48498 * 109.47229 * 274.45412 * 21 19 17 23 23 H 1.48502 * 109.47603 * 34.45780 * 21 19 17 24 24 H 1.48505 * 109.46800 * 154.45764 * 21 19 17 25 25 C 1.47015 * 108.70422 * 335.54914 * 16 15 14 26 26 C 1.38687 * 120.09799 * 359.48166 * 10 9 8 27 27 F 1.35099 * 120.12870 * 180.23447 * 26 10 9 28 28 H 1.08994 * 109.47142 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47005 * 60.00537 * 1 2 3 30 30 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.87375 * 179.97438 * 8 6 5 32 32 H 1.07996 * 119.83300 * 180.27638 * 9 8 6 33 33 H 1.08996 * 111.00583 * 324.20745 * 14 12 11 34 34 H 1.09003 * 110.99843 * 88.02223 * 14 12 11 35 35 H 1.09001 * 110.49709 * 278.45322 * 15 14 12 36 36 H 1.09001 * 110.34271 * 156.06209 * 15 14 12 37 37 H 0.96994 * 120.00634 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.88292 * 120.70464 * 25 16 15 39 39 H 1.09000 * 109.88412 * 241.71377 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5359 1.2778 -0.0006 6 6 4.2380 1.3154 -1.2112 7 9 3.5675 1.2804 -2.3835 8 6 5.6176 1.3882 -1.2053 9 6 6.3080 1.4297 -0.0073 10 6 5.6231 1.3877 1.1977 11 8 6.3103 1.4240 2.3710 12 6 7.7363 1.3849 2.2891 13 1 8.0598 0.7082 1.4982 14 6 8.3533 0.9718 3.6515 15 6 9.7568 1.6271 3.5664 16 7 9.5299 2.9105 2.8773 17 6 10.3272 4.0196 2.9733 18 1 9.8974 5.0046 2.8656 19 6 11.6878 3.8781 3.2090 20 7 12.3778 4.8830 3.7053 21 14 12.5395 2.2613 2.8218 22 1 12.3999 1.3391 3.9773 23 1 11.9164 1.6485 1.6212 24 1 13.9797 2.5110 2.5591 25 6 8.3095 2.8002 2.0651 26 6 4.2382 1.3145 1.2084 27 9 3.5701 1.2784 2.3820 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.1588 1.4167 -2.1394 32 1 7.3862 1.4911 -0.0105 33 1 7.7771 1.3808 4.4814 34 1 8.4337 -0.1123 3.7312 35 1 10.4360 1.0008 2.9879 36 1 10.1562 1.7985 4.5660 37 1 13.3286 4.7843 3.8696 38 1 7.5836 3.5486 2.3831 39 1 8.5510 2.9424 1.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234673395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:43 Heat of formation + Delta-G solvation = -142.974600 kcal Electronic energy + Delta-G solvation = -27700.440940 eV Core-core repulsion = 23246.344089 eV Total energy + Delta-G solvation = -4454.096850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.38018 -49.25090 -40.86259 -40.31601 -38.14134 -36.85313 -36.45129 -32.55177 -31.92795 -30.45010 -29.44214 -28.33544 -28.03774 -25.05841 -24.33485 -23.10779 -21.92405 -21.04915 -20.41281 -19.04276 -18.23012 -18.06056 -17.84200 -17.13201 -17.01198 -16.42381 -16.35891 -15.99546 -15.76771 -15.52603 -15.22729 -14.78409 -14.62665 -14.24340 -13.86873 -13.60650 -13.57269 -13.18543 -12.89721 -12.74088 -12.55693 -12.48906 -12.16810 -12.00224 -11.89855 -11.60809 -11.20224 -11.11595 -11.06287 -10.77855 -10.56015 -10.37765 -10.23050 -9.67625 -9.56961 -8.72465 -8.45400 -7.08193 -6.08705 -3.48464 0.23082 0.61700 1.55168 2.12201 2.81780 2.90167 3.25299 3.37098 3.37834 3.40725 3.87366 4.11492 4.30908 4.42167 4.42914 4.61539 4.73512 4.79061 4.80603 4.83521 5.07272 5.09207 5.13553 5.20749 5.27058 5.39690 5.51593 5.57659 5.68641 5.81111 5.82065 6.01050 6.04331 6.25427 6.37897 6.45592 6.56249 7.12465 7.18170 7.67191 8.20742 8.71122 9.54248 10.04112 11.07054 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.002838 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.809518 B = 9863.866823 C =10237.954309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.524 3.476 4 O -0.478 6.478 5 C -0.146 4.146 6 C 0.124 3.876 7 F -0.124 7.124 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.106 3.894 11 O -0.287 6.287 12 C 0.063 3.937 13 H 0.085 0.915 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.602 5.602 17 C -0.251 4.251 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.900 5.900 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.275 1.275 24 H -0.299 1.299 25 C 0.110 3.890 26 C 0.133 3.867 27 F -0.113 7.113 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.266 0.734 38 H 0.047 0.953 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 -13.330 -9.161 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C 0.365 3.635 4 O -0.364 6.364 5 C -0.149 4.149 6 C 0.104 3.896 7 F -0.103 7.103 8 C -0.133 4.133 9 C -0.150 4.150 10 C 0.059 3.941 11 O -0.200 6.200 12 C 0.007 3.993 13 H 0.103 0.897 14 C -0.159 4.159 15 C -0.008 4.008 16 N -0.330 5.330 17 C -0.378 4.378 18 H 0.106 0.894 19 C -0.168 4.168 20 N -0.542 5.542 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.200 1.200 24 H -0.226 1.226 25 C -0.015 4.015 26 C 0.113 3.887 27 F -0.091 7.091 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.536 -12.855 -8.886 24.245 hybrid contribution 0.329 -0.766 -0.404 0.926 sum -18.208 -13.621 -9.290 24.564 Atomic orbital electron populations 1.23397 0.75366 1.04236 1.02994 1.86658 1.24043 1.31830 1.83609 1.20520 0.87959 0.82238 0.72813 1.90911 1.65997 1.35985 1.43461 1.18675 0.90720 1.12836 0.92635 1.16991 0.89705 1.03600 0.79318 1.91553 1.80470 1.93721 1.44523 1.20961 0.91074 1.01096 1.00155 1.21433 1.02155 1.01377 0.90002 1.18767 0.89530 0.98324 0.87502 1.86273 1.21126 1.87034 1.25517 1.23829 0.75661 0.99138 1.00622 0.89671 1.22921 0.97225 1.00448 0.95339 1.22015 0.93180 0.87829 0.97763 1.44576 1.27351 1.11313 1.49777 1.18561 0.88005 0.84856 1.46364 0.89442 1.25303 0.95980 0.96834 0.98639 1.69818 1.08495 1.32002 1.43901 0.86878 0.78298 0.84534 0.79192 1.20899 1.20046 1.22632 1.21945 0.90981 0.93077 0.95510 1.16279 0.86819 1.05358 0.80278 1.91573 1.79937 1.93487 1.44101 0.91400 0.91475 0.87507 0.82487 0.82031 0.89497 0.90526 0.95543 0.91489 0.92413 0.93479 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.90 10.58 -40.63 -0.43 -4.33 16 3 C 0.52 7.00 6.68 34.47 0.23 7.23 16 4 O -0.48 -7.38 16.90 -19.27 -0.33 -7.70 16 5 C -0.15 -1.86 5.76 -104.89 -0.60 -2.46 16 6 C 0.12 1.38 7.29 -38.95 -0.28 1.10 16 7 F -0.12 -1.41 16.83 2.25 0.04 -1.38 16 8 C -0.11 -1.06 10.00 -39.58 -0.40 -1.46 16 9 C -0.13 -1.39 8.76 -39.39 -0.35 -1.73 16 10 C 0.11 1.38 6.62 -39.26 -0.26 1.12 16 11 O -0.29 -4.22 9.74 -19.80 -0.19 -4.42 16 12 C 0.06 0.94 2.76 -24.90 -0.07 0.87 16 13 H 0.09 1.06 6.60 -51.93 -0.34 0.72 16 14 C -0.12 -1.86 6.82 -24.46 -0.17 -2.03 16 15 C 0.12 2.33 4.87 -2.41 -0.01 2.31 16 16 N -0.60 -13.77 3.03 -169.94 -0.52 -14.28 16 17 C -0.25 -6.85 10.51 -15.06 -0.16 -7.01 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 19 C 0.03 0.92 5.43 -17.43 -0.09 0.83 16 20 N -0.90 -26.87 13.97 55.49 0.78 -26.10 16 21 Si 0.88 21.31 24.55 -169.99 -4.17 17.14 16 22 H -0.28 -6.54 6.98 56.52 0.39 -6.14 16 23 H -0.27 -6.44 6.98 56.52 0.39 -6.05 16 24 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 25 C 0.11 2.03 6.50 -3.07 -0.02 2.01 16 26 C 0.13 1.79 7.30 -38.81 -0.28 1.51 16 27 F -0.11 -1.65 16.67 2.25 0.04 -1.61 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.16 1.56 5.28 -52.49 -0.28 1.28 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.03 0.54 5.50 -51.93 -0.29 0.25 16 36 H 0.07 1.41 7.85 -51.93 -0.41 1.00 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 39 H 0.04 0.67 7.42 -51.93 -0.39 0.28 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -32.24 339.03 -5.30 -37.54 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.22 Total: -3.59 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.39 Total: 3.61 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.26 Total: -40.38 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.95 Total: -16.45 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.17 Total: 17.14 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.24 -5.30 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234673395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.436 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds