Wall clock time and date at job start Tue Mar 31 2020 15:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34752 * 117.00137 * 2 1 4 4 O 1.21508 * 119.99246 * 359.97438 * 3 2 1 5 5 C 1.47420 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.39999 * 120.16660 * 90.02197 * 5 3 2 7 7 F 1.35096 * 120.05352 * 359.97438 * 6 5 3 8 8 C 1.38151 * 119.89676 * 179.97438 * 6 5 3 9 9 C 1.38326 * 120.24886 * 359.73768 * 8 6 5 10 10 C 1.38670 * 120.33961 * 0.52108 * 9 8 6 11 11 O 1.36017 * 119.95128 * 179.75798 * 10 9 8 12 12 C 1.42894 * 117.00084 * 354.57275 * 11 10 9 13 13 H 1.08997 * 110.77873 * 321.68036 * 12 11 10 14 14 C 1.55158 * 110.71955 * 198.44459 * 12 11 10 15 15 C 1.55129 * 101.48564 * 205.96776 * 14 12 11 16 16 N 1.47423 * 104.72043 * 37.29789 * 15 14 12 17 17 C 1.36936 * 125.64541 * 155.82083 * 16 15 14 18 18 H 1.08006 * 120.00020 * 209.84875 * 17 16 15 19 19 C 1.38813 * 120.00570 * 29.84485 * 17 16 15 20 20 N 1.31610 * 120.00770 * 201.01844 * 19 17 16 21 21 Si 1.86801 * 119.99378 * 21.01852 * 19 17 16 22 22 H 1.48498 * 109.47229 * 274.45412 * 21 19 17 23 23 H 1.48502 * 109.47603 * 34.45780 * 21 19 17 24 24 H 1.48505 * 109.46800 * 154.45764 * 21 19 17 25 25 C 1.47015 * 108.70422 * 335.54914 * 16 15 14 26 26 C 1.38687 * 120.09799 * 359.48166 * 10 9 8 27 27 F 1.35099 * 120.12870 * 180.23447 * 26 10 9 28 28 H 1.08994 * 109.47142 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47005 * 60.00537 * 1 2 3 30 30 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.87375 * 179.97438 * 8 6 5 32 32 H 1.07996 * 119.83300 * 180.27638 * 9 8 6 33 33 H 1.08996 * 111.00583 * 324.20745 * 14 12 11 34 34 H 1.09003 * 110.99843 * 88.02223 * 14 12 11 35 35 H 1.09001 * 110.49709 * 278.45322 * 15 14 12 36 36 H 1.09001 * 110.34271 * 156.06209 * 15 14 12 37 37 H 0.96994 * 120.00634 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.88292 * 120.70464 * 25 16 15 39 39 H 1.09000 * 109.88412 * 241.71377 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5359 1.2778 -0.0006 6 6 4.2380 1.3154 -1.2112 7 9 3.5675 1.2804 -2.3835 8 6 5.6176 1.3882 -1.2053 9 6 6.3080 1.4297 -0.0073 10 6 5.6231 1.3877 1.1977 11 8 6.3103 1.4240 2.3710 12 6 7.7363 1.3849 2.2891 13 1 8.0598 0.7082 1.4982 14 6 8.3533 0.9718 3.6515 15 6 9.7568 1.6271 3.5664 16 7 9.5299 2.9105 2.8773 17 6 10.3272 4.0196 2.9733 18 1 9.8974 5.0046 2.8656 19 6 11.6878 3.8781 3.2090 20 7 12.3778 4.8830 3.7053 21 14 12.5395 2.2613 2.8218 22 1 12.3999 1.3391 3.9773 23 1 11.9164 1.6485 1.6212 24 1 13.9797 2.5110 2.5591 25 6 8.3095 2.8002 2.0651 26 6 4.2382 1.3145 1.2084 27 9 3.5701 1.2784 2.3820 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 6.1588 1.4167 -2.1394 32 1 7.3862 1.4911 -0.0105 33 1 7.7771 1.3808 4.4814 34 1 8.4337 -0.1123 3.7312 35 1 10.4360 1.0008 2.9879 36 1 10.1562 1.7985 4.5660 37 1 13.3286 4.7843 3.8696 38 1 7.5836 3.5486 2.3831 39 1 8.5510 2.9424 1.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234673395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:42 Heat of formation + Delta-G solvation = -163.350299 kcal Electronic energy + Delta-G solvation = -27701.324496 eV Core-core repulsion = 23246.344089 eV Total energy + Delta-G solvation = -4454.980407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.29118 -50.25552 -41.83053 -41.36251 -39.29987 -37.94647 -37.62712 -34.48856 -32.82009 -31.90335 -30.66836 -29.63707 -28.81781 -26.44650 -25.62825 -24.06386 -22.99551 -22.59781 -21.64872 -20.02526 -19.31614 -19.09370 -18.84679 -18.71382 -18.04847 -17.42834 -17.33167 -17.19206 -16.92103 -16.67762 -16.50222 -15.96379 -15.74810 -15.36119 -15.16698 -14.96647 -14.52354 -14.45845 -14.05989 -13.99992 -13.88404 -13.57135 -13.37043 -13.12464 -13.02135 -12.94344 -12.73299 -12.41526 -12.16325 -12.01765 -12.01325 -11.77375 -11.72617 -11.51313 -10.75374 -10.45769 -9.43157 -8.95963 -8.21558 -5.58640 -0.66316 -0.27380 0.54775 1.25741 1.35374 1.42862 1.53443 1.81831 1.99288 2.42596 2.44900 2.96924 3.01638 3.25080 3.29573 3.46730 3.53411 3.64972 3.72657 3.80926 3.95825 4.17479 4.24242 4.30004 4.35410 4.42234 4.49555 4.61861 4.69391 4.77948 4.81602 4.86446 4.91813 4.94822 4.95180 5.14998 5.25870 5.74478 6.05303 6.11743 6.23121 6.74094 7.48332 8.06804 8.98547 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.002838 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.809518 B = 9863.866823 C =10237.954309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.523 3.477 4 O -0.509 6.509 5 C -0.158 4.158 6 C 0.124 3.876 7 F -0.125 7.125 8 C -0.092 4.092 9 C -0.121 4.121 10 C 0.094 3.906 11 O -0.300 6.300 12 C 0.078 3.922 13 H 0.124 0.876 14 C -0.111 4.111 15 C 0.108 3.892 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.045 0.955 19 C -0.027 4.027 20 N -0.954 5.954 21 Si 0.950 3.050 22 H -0.265 1.265 23 H -0.254 1.254 24 H -0.308 1.308 25 C 0.105 3.895 26 C 0.115 3.885 27 F -0.128 7.128 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.265 0.735 38 H 0.027 0.973 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.624 -16.611 -11.044 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.365 3.635 4 O -0.397 6.397 5 C -0.161 4.161 6 C 0.104 3.896 7 F -0.103 7.103 8 C -0.110 4.110 9 C -0.139 4.139 10 C 0.047 3.953 11 O -0.213 6.213 12 C 0.022 3.978 13 H 0.141 0.859 14 C -0.149 4.149 15 C -0.016 4.016 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.062 0.938 19 C -0.223 4.223 20 N -0.598 5.598 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.179 1.179 24 H -0.236 1.236 25 C -0.020 4.020 26 C 0.095 3.905 27 F -0.106 7.106 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.212 0.788 32 H 0.197 0.803 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.832 -16.187 -10.781 27.072 hybrid contribution 0.221 0.318 0.152 0.416 sum -18.611 -15.870 -10.629 26.668 Atomic orbital electron populations 1.23772 0.73329 1.06631 1.03158 1.86653 1.26100 1.30730 1.82924 1.20742 0.88372 0.82378 0.71990 1.90887 1.66724 1.36971 1.45167 1.18794 0.90586 1.13534 0.93198 1.17174 0.90445 1.03309 0.78701 1.91556 1.80692 1.93685 1.44410 1.21319 0.90085 0.98394 1.01232 1.21638 1.02848 1.00138 0.89311 1.18899 0.89227 0.99370 0.87828 1.86246 1.20841 1.87534 1.26670 1.23692 0.75829 0.96922 1.01383 0.85886 1.22854 0.94069 1.02453 0.95534 1.22145 0.96200 0.86768 0.96475 1.44620 1.27722 1.11190 1.51540 1.18399 0.88753 0.85143 1.45307 0.93758 1.26001 0.96659 1.00825 0.98819 1.69969 1.08716 1.34932 1.46209 0.85789 0.76269 0.80212 0.80089 1.19045 1.17853 1.23579 1.22066 0.88855 0.95515 0.95534 1.16425 0.87217 1.06827 0.80032 1.91527 1.80322 1.93819 1.44924 0.91531 0.91104 0.84007 0.78762 0.80305 0.90301 0.86412 0.94385 0.93491 0.92577 0.95451 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.57 113.37 1.20 1.52 16 2 O -0.35 -7.56 10.58 -56.63 -0.60 -8.15 16 3 C 0.52 13.81 6.68 70.24 0.47 14.28 16 4 O -0.51 -15.88 16.90 19.81 0.33 -15.55 16 5 C -0.16 -3.87 5.76 -20.04 -0.12 -3.98 16 6 C 0.12 2.46 7.29 22.68 0.17 2.63 16 7 F -0.13 -2.56 16.83 44.97 0.76 -1.80 16 8 C -0.09 -1.34 10.00 22.27 0.22 -1.11 16 9 C -0.12 -2.09 8.76 22.39 0.20 -1.89 16 10 C 0.09 2.21 6.62 22.48 0.15 2.36 16 11 O -0.30 -8.13 9.74 -93.75 -0.91 -9.04 16 12 C 0.08 2.03 2.76 31.78 0.09 2.12 16 13 H 0.12 2.35 6.60 -2.39 -0.02 2.33 16 14 C -0.11 -3.04 6.82 32.06 0.22 -2.83 16 15 C 0.11 4.04 4.87 86.93 0.42 4.47 16 16 N -0.62 -27.98 3.03 -691.56 -2.10 -30.08 16 17 C -0.25 -13.86 10.51 84.03 0.88 -12.98 16 18 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 19 C -0.03 -1.54 5.43 84.86 0.46 -1.08 16 20 N -0.95 -58.87 13.97 21.65 0.30 -58.57 16 21 Si 0.95 43.45 24.55 68.60 1.68 45.13 16 22 H -0.26 -11.27 6.98 99.48 0.69 -10.57 16 23 H -0.25 -10.68 6.98 99.48 0.69 -9.99 16 24 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 25 C 0.11 3.70 6.50 86.73 0.56 4.27 16 26 C 0.12 2.99 7.30 22.77 0.17 3.16 16 27 F -0.13 -3.74 16.67 44.97 0.75 -2.99 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.18 2.51 5.28 -2.91 -0.02 2.50 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.04 1.36 5.50 -2.39 -0.01 1.35 16 36 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 39 H 0.05 1.73 7.42 -2.39 -0.02 1.71 16 Total: -1.00 -73.85 339.03 6.39 -67.47 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.08 Total: 2.66 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.09 Total: 10.93 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -1.80 Total: -88.65 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.18 Total: -32.74 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.51 Total: -4.80 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.68 Total: 45.13 kcal Total: -73.85 6.39 -67.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234673395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.883 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds