Wall clock time and date at job start Tue Mar 31 2020 15:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34745 * 116.99704 * 2 1 4 4 O 1.21501 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.47421 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.40001 * 120.17237 * 269.99989 * 5 3 2 7 7 F 1.35093 * 120.04527 * 359.97438 * 6 5 3 8 8 C 1.38146 * 119.90296 * 180.02562 * 6 5 3 9 9 C 1.38333 * 120.24380 * 0.02562 * 8 6 5 10 10 C 1.38666 * 120.34556 * 359.97438 * 9 8 6 11 11 O 1.36014 * 119.95166 * 179.97438 * 10 9 8 12 12 C 1.42896 * 117.00081 * 5.93532 * 11 10 9 13 13 H 1.08994 * 110.64488 * 33.19058 * 12 11 10 14 14 C 1.55157 * 110.72151 * 156.33717 * 12 11 10 15 15 C 1.54911 * 101.58345 * 153.86469 * 14 12 11 16 16 N 1.47428 * 104.82958 * 322.98861 * 15 14 12 17 17 C 1.36940 * 125.64605 * 204.09179 * 16 15 14 18 18 H 1.08006 * 119.99631 * 166.80922 * 17 16 15 19 19 C 1.38804 * 119.99982 * 346.81225 * 17 16 15 20 20 N 1.31618 * 120.00402 * 351.96317 * 19 17 16 21 21 Si 1.86802 * 119.99887 * 172.23735 * 19 17 16 22 22 H 1.48493 * 109.47253 * 264.84197 * 21 19 17 23 23 H 1.48504 * 109.46950 * 24.84093 * 21 19 17 24 24 H 1.48506 * 109.47161 * 144.83891 * 21 19 17 25 25 C 1.47016 * 108.70282 * 24.35694 * 16 15 14 26 26 C 1.38684 * 120.09302 * 0.25985 * 10 9 8 27 27 F 1.35096 * 120.12183 * 179.74167 * 26 10 9 28 28 H 1.09001 * 109.46710 * 60.00315 * 1 2 3 29 29 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47431 * 300.00324 * 1 2 3 31 31 H 1.07999 * 119.87740 * 179.97438 * 8 6 5 32 32 H 1.08004 * 119.82341 * 179.97438 * 9 8 6 33 33 H 1.09003 * 111.00777 * 35.78839 * 14 12 11 34 34 H 1.09000 * 111.00538 * 271.93673 * 14 12 11 35 35 H 1.09003 * 110.36497 * 204.15253 * 15 14 12 36 36 H 1.08996 * 110.46050 * 81.87334 * 15 14 12 37 37 H 0.96997 * 120.00473 * 180.28055 * 20 19 17 38 38 H 1.08999 * 109.88538 * 118.12908 * 25 16 15 39 39 H 1.09004 * 109.88700 * 239.29505 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.2380 1.3149 1.2112 7 9 3.5674 1.2805 2.3834 8 6 5.6176 1.3878 1.2052 9 6 6.3082 1.4248 0.0072 10 6 5.6230 1.3886 -1.1978 11 8 6.3100 1.4259 -2.3711 12 6 7.7356 1.3705 -2.2901 13 1 8.0490 0.7551 -1.4468 14 6 8.3403 0.8351 -3.6149 15 6 9.7515 1.4737 -3.5931 16 7 9.5511 2.8122 -3.0085 17 6 10.3657 3.8964 -3.1989 18 1 10.0303 4.8813 -2.9089 19 6 11.6222 3.7295 -3.7646 20 7 12.0951 2.5189 -3.9721 21 14 12.6453 5.2233 -4.2242 22 1 12.4359 5.5443 -5.6589 23 1 12.2315 6.3818 -3.3923 24 1 14.0819 4.9315 -3.9868 25 6 8.3353 2.7885 -2.1822 26 6 4.2378 1.3203 -1.2084 27 9 3.5694 1.2903 -2.3820 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 6.1588 1.4168 2.1393 32 1 7.3867 1.4822 0.0104 33 1 7.7674 1.1829 -4.4746 34 1 8.4037 -0.2530 -3.6039 35 1 10.1458 1.5572 -4.6059 36 1 10.4264 0.8854 -2.9713 37 1 12.9748 2.4023 -4.3636 38 1 8.5877 3.0083 -1.1449 39 1 7.6193 3.5210 -2.5550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234673397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:45 Heat of formation + Delta-G solvation = -163.617017 kcal Electronic energy + Delta-G solvation = -27581.748210 eV Core-core repulsion = 23126.756237 eV Total energy + Delta-G solvation = -4454.991973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.28517 -50.24783 -41.81769 -41.31689 -39.18542 -37.87480 -37.57376 -34.32455 -32.80795 -31.50167 -30.60765 -29.20536 -28.78385 -26.58597 -25.66086 -24.06407 -22.95809 -22.20681 -21.61549 -20.03269 -19.22899 -19.07517 -18.83377 -18.67916 -18.03801 -17.37385 -17.30362 -16.91214 -16.79170 -16.66582 -16.40587 -16.01811 -15.68389 -15.32845 -15.08099 -14.85699 -14.45306 -14.32297 -13.98019 -13.79782 -13.62094 -13.53536 -13.27321 -12.99607 -12.91576 -12.81238 -12.61251 -12.29928 -12.02074 -12.00765 -12.00605 -11.83981 -11.65829 -11.51683 -10.71425 -10.44901 -9.41654 -8.87716 -7.91015 -5.27413 -0.65575 -0.26331 0.55293 1.26723 1.47850 1.49086 1.57865 1.85679 2.00211 2.45014 2.49874 2.98622 3.26374 3.30335 3.46938 3.52094 3.63527 3.68754 3.84560 3.91896 4.02059 4.17960 4.24728 4.37106 4.44315 4.58786 4.61774 4.63962 4.72631 4.81384 4.88081 4.93693 4.95791 4.98643 5.26739 5.42220 5.56031 5.68671 6.10349 6.18838 6.23675 7.05886 7.71522 8.36518 9.21035 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.002634 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.729395 B =10629.194851 C =10939.208156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.523 3.477 4 O -0.509 6.509 5 C -0.157 4.157 6 C 0.124 3.876 7 F -0.125 7.125 8 C -0.091 4.091 9 C -0.121 4.121 10 C 0.093 3.907 11 O -0.302 6.302 12 C 0.082 3.918 13 H 0.117 0.883 14 C -0.125 4.125 15 C 0.179 3.821 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.056 4.056 20 N -0.944 5.944 21 Si 0.975 3.025 22 H -0.289 1.289 23 H -0.269 1.269 24 H -0.292 1.292 25 C 0.112 3.888 26 C 0.114 3.886 27 F -0.128 7.128 28 H 0.066 0.934 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.179 0.821 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.036 0.964 36 H 0.019 0.981 37 H 0.251 0.749 38 H 0.046 0.954 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 -8.734 11.702 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.366 3.634 4 O -0.397 6.397 5 C -0.161 4.161 6 C 0.104 3.896 7 F -0.103 7.103 8 C -0.109 4.109 9 C -0.140 4.140 10 C 0.046 3.954 11 O -0.215 6.215 12 C 0.026 3.974 13 H 0.135 0.865 14 C -0.163 4.163 15 C 0.054 3.946 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.250 4.250 20 N -0.591 5.591 21 Si 0.803 3.197 22 H -0.216 1.216 23 H -0.193 1.193 24 H -0.218 1.218 25 C -0.013 4.013 26 C 0.094 3.906 27 F -0.107 7.107 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.213 0.787 32 H 0.196 0.804 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.072 -8.395 11.429 22.971 hybrid contribution 0.278 0.966 -0.571 1.156 sum -17.794 -7.429 10.858 22.129 Atomic orbital electron populations 1.23776 0.73312 1.06633 1.03175 1.86655 1.26124 1.30750 1.82917 1.20723 0.88339 0.82379 0.71986 1.90880 1.66714 1.36927 1.45176 1.18786 0.90619 1.13507 0.93143 1.17155 0.90416 1.03356 0.78691 1.91554 1.80672 1.93694 1.44367 1.21313 0.90080 0.98356 1.01146 1.21607 1.02808 1.00214 0.89325 1.18949 0.89300 0.99283 0.87872 1.86253 1.21059 1.87398 1.26819 1.23632 0.75482 0.96948 1.01309 0.86510 1.23031 0.96119 1.01476 0.95687 1.21228 0.91577 0.84436 0.97348 1.44598 1.26512 1.09063 1.54773 1.19332 0.95133 0.87070 1.36023 0.90579 1.25633 0.97788 0.99360 1.02237 1.70083 1.18339 1.21108 1.49618 0.85118 0.77641 0.79003 0.77895 1.21616 1.19330 1.21802 1.21889 0.88911 0.95326 0.95175 1.16434 0.87182 1.06936 0.80062 1.91523 1.80295 1.93848 1.44989 0.91542 0.84029 0.91034 0.78675 0.80427 0.91288 0.87765 0.94520 0.96271 0.94006 0.93603 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -7.80 10.58 -56.55 -0.60 -8.40 16 3 C 0.52 14.12 6.68 70.24 0.47 14.59 16 4 O -0.51 -16.02 16.90 19.83 0.34 -15.69 16 5 C -0.16 -3.98 5.76 -20.04 -0.12 -4.09 16 6 C 0.12 2.54 7.29 22.68 0.17 2.71 16 7 F -0.12 -2.59 16.83 44.97 0.76 -1.84 16 8 C -0.09 -1.39 10.00 22.27 0.22 -1.17 16 9 C -0.12 -2.26 8.88 22.39 0.20 -2.07 16 10 C 0.09 2.36 6.67 22.48 0.15 2.51 16 11 O -0.30 -9.08 9.73 -93.71 -0.91 -9.99 16 12 C 0.08 2.48 2.74 31.79 0.09 2.56 16 13 H 0.12 2.78 6.28 -2.39 -0.02 2.76 16 14 C -0.12 -4.20 6.81 31.99 0.22 -3.98 16 15 C 0.18 8.11 5.38 86.86 0.47 8.58 16 16 N -0.62 -30.33 3.39 -691.96 -2.35 -32.68 16 17 C -0.25 -13.38 10.23 84.03 0.86 -12.52 16 18 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 19 C -0.06 -3.07 5.40 84.86 0.46 -2.61 16 20 N -0.94 -54.18 10.76 21.65 0.23 -53.94 16 21 Si 0.98 44.37 29.56 68.60 2.03 46.39 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.11 4.27 6.78 86.74 0.59 4.86 16 26 C 0.11 3.11 7.30 22.77 0.17 3.28 16 27 F -0.13 -3.94 16.67 44.97 0.75 -3.19 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.18 2.82 5.55 -2.91 -0.02 2.80 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.04 1.90 7.11 -2.39 -0.02 1.89 16 36 H 0.02 0.92 8.01 -2.39 -0.02 0.90 16 37 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.05 1.60 7.76 -2.39 -0.02 1.58 16 39 H 0.03 1.03 8.06 -2.38 -0.02 1.02 16 Total: -1.00 -69.79 343.89 6.48 -63.31 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.10 Total: 1.83 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.13 Total: 14.18 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.12 Total: -86.62 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.17 Total: -34.07 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.51 Total: -5.03 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.79 6.48 -63.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234673397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.306 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds