Wall clock time and date at job start Tue Mar 31 2020 15:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34744 * 116.99810 * 2 1 4 4 O 1.21498 * 120.00411 * 0.02562 * 3 2 1 5 5 C 1.47420 * 119.99585 * 180.02562 * 3 2 1 6 6 C 1.39999 * 120.17062 * 269.99794 * 5 3 2 7 7 F 1.35099 * 120.04692 * 359.97438 * 6 5 3 8 8 C 1.38143 * 119.90226 * 180.02562 * 6 5 3 9 9 C 1.38326 * 120.24835 * 0.02562 * 8 6 5 10 10 C 1.38670 * 120.34168 * 0.02562 * 9 8 6 11 11 O 1.36019 * 119.95122 * 179.97438 * 10 9 8 12 12 C 1.42904 * 116.99850 * 5.82611 * 11 10 9 13 13 C 1.53515 * 114.16716 * 156.77114 * 12 11 10 14 14 N 1.47475 * 87.92946 * 87.62212 * 13 12 11 15 15 C 1.46906 * 111.00040 * 138.70638 * 14 13 12 16 16 C 1.50693 * 109.47393 * 169.99935 * 15 14 13 17 17 H 1.08000 * 119.99931 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00093 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99938 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47296 * 269.99877 * 20 18 16 22 22 H 1.48504 * 109.47392 * 30.00109 * 20 18 16 23 23 H 1.48504 * 109.47323 * 149.99552 * 20 18 16 24 24 C 1.47473 * 87.83967 * 27.00870 * 14 13 12 25 25 C 1.38682 * 120.09294 * 0.24803 * 10 9 8 26 26 F 1.35099 * 120.11999 * 179.73111 * 25 10 9 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47179 * 299.99954 * 1 2 3 29 29 H 1.09001 * 109.47154 * 59.99692 * 1 2 3 30 30 H 1.08003 * 119.87607 * 179.97438 * 8 6 5 31 31 H 1.08003 * 119.82783 * 179.97438 * 9 8 6 32 32 H 1.09001 * 113.25686 * 23.82562 * 12 11 10 33 33 H 1.09007 * 113.47462 * 332.85401 * 13 12 11 34 34 H 1.08997 * 113.52880 * 202.40252 * 13 12 11 35 35 H 1.09000 * 109.47229 * 49.99246 * 15 14 13 36 36 H 1.09004 * 109.46586 * 289.99549 * 15 14 13 37 37 H 0.96996 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.09001 * 113.47783 * 87.75795 * 24 14 13 39 39 H 1.08997 * 113.47848 * 218.22201 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5359 1.2777 -0.0006 6 6 4.2390 1.3143 1.2095 7 9 3.5693 1.2795 2.3823 8 6 5.6185 1.3871 1.2025 9 6 6.3082 1.4245 0.0040 10 6 5.6220 1.3899 -1.2005 11 8 6.3083 1.4276 -2.3743 12 6 7.7340 1.3733 -2.2943 13 6 8.4162 0.8631 -3.5714 14 7 8.4189 2.2540 -4.0615 15 6 9.6888 2.5754 -4.7266 16 6 9.5679 3.9055 -5.4243 17 1 8.6404 4.4569 -5.3787 18 6 10.6414 4.4187 -6.1209 19 7 11.7711 3.7475 -6.1761 20 14 10.4913 6.0672 -6.9864 21 1 10.0095 5.8553 -8.3750 22 1 9.5263 6.9253 -6.2532 23 1 11.8189 6.7319 -7.0191 24 6 8.4343 2.6913 -2.6532 25 6 4.2369 1.3225 -1.2100 26 9 3.5676 1.2943 -2.3832 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 6.1605 1.4157 2.1363 31 1 7.3867 1.4818 0.0065 32 1 8.0962 0.9069 -1.3781 33 1 7.7885 0.1957 -4.1620 34 1 9.4147 0.4609 -3.4004 35 1 9.9221 1.8014 -5.4577 36 1 10.4852 2.6256 -3.9840 37 1 12.5264 4.1087 -6.6658 38 1 9.4377 2.7775 -2.2362 39 1 7.8221 3.5734 -2.4657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234675913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:20 Heat of formation + Delta-G solvation = -126.103970 kcal Electronic energy + Delta-G solvation = -27146.831656 eV Core-core repulsion = 22693.466371 eV Total energy + Delta-G solvation = -4453.365285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.41591 -49.23040 -40.91399 -40.54863 -38.92173 -37.01554 -36.61749 -32.93336 -31.96020 -30.28423 -29.09897 -28.16166 -25.92373 -25.48688 -24.69057 -23.18846 -22.24123 -21.44486 -19.89189 -19.00675 -18.16275 -17.98362 -17.67143 -17.13551 -16.45890 -16.39449 -16.37785 -15.99752 -15.77665 -15.43003 -15.22662 -14.84900 -14.65606 -14.28802 -13.89021 -13.77777 -13.57441 -13.43929 -13.06258 -12.67037 -12.61424 -12.32353 -12.22244 -11.99803 -11.78312 -11.23199 -11.19948 -11.04117 -10.99670 -10.58194 -10.46327 -10.24921 -9.77984 -9.60956 -9.33875 -8.49024 -8.45893 -7.97159 -6.08912 -4.10050 0.19109 0.58168 1.54393 2.10749 2.76870 2.83701 3.30352 3.34206 3.36171 3.40940 3.84100 4.06832 4.24857 4.33062 4.38496 4.50206 4.64076 4.65617 4.74326 4.83864 4.92440 5.13015 5.18158 5.26628 5.35312 5.43744 5.51125 5.60189 5.73814 5.81278 5.88458 5.99685 6.05002 6.20370 6.48881 7.01960 7.11667 7.17736 7.56053 7.77610 8.01586 8.37521 8.97839 9.54647 11.02127 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002481 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.952608 B =11285.200130 C =11726.049242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.523 3.477 4 O -0.478 6.478 5 C -0.144 4.144 6 C 0.122 3.878 7 F -0.125 7.125 8 C -0.115 4.115 9 C -0.135 4.135 10 C 0.106 3.894 11 O -0.260 6.260 12 C 0.038 3.962 13 C 0.002 3.998 14 N -0.456 5.456 15 C 0.156 3.844 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.006 4.006 25 C 0.136 3.864 26 F -0.110 7.110 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 -10.440 18.001 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C 0.364 3.636 4 O -0.363 6.363 5 C -0.147 4.147 6 C 0.102 3.898 7 F -0.103 7.103 8 C -0.134 4.134 9 C -0.154 4.154 10 C 0.058 3.942 11 O -0.172 6.172 12 C -0.018 4.018 13 C -0.127 4.127 14 N -0.179 5.179 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.135 4.135 25 C 0.115 3.885 26 F -0.088 7.088 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.549 -9.862 17.201 25.198 hybrid contribution 0.513 0.715 0.012 0.880 sum -15.037 -9.147 17.214 24.619 Atomic orbital electron populations 1.23405 0.75315 1.04269 1.03010 1.86655 1.24083 1.31783 1.83585 1.20505 0.87951 0.82268 0.72854 1.90911 1.65994 1.35977 1.43440 1.18695 0.90805 1.12607 0.92625 1.16986 0.89738 1.03728 0.79305 1.91554 1.80535 1.93738 1.44467 1.20926 0.91092 1.01332 1.00039 1.21304 1.01945 1.02191 0.89973 1.18844 0.89705 0.98129 0.87540 1.86333 1.19827 1.86343 1.24671 1.23929 0.77444 1.00456 1.00008 1.24017 0.99003 0.96419 0.93290 1.69134 1.36709 1.02329 1.09768 1.20313 0.84331 0.97885 0.94433 1.21085 0.98468 1.03528 1.31303 0.91787 1.25001 0.95191 0.97940 0.96553 1.69945 1.02792 1.38630 1.42661 0.86463 0.77236 0.83507 0.80035 1.20551 1.19783 1.21278 1.24281 0.99648 0.96812 0.92772 1.16299 0.86846 1.04949 0.80374 1.91597 1.79814 1.93372 1.44031 0.87475 0.91479 0.91363 0.82575 0.82134 0.89054 0.89440 0.89999 0.95076 0.97728 0.92867 0.90134 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.89 10.58 -40.61 -0.43 -4.31 16 3 C 0.52 6.94 6.68 34.47 0.23 7.17 16 4 O -0.48 -7.35 16.90 -19.26 -0.33 -7.67 16 5 C -0.14 -1.79 5.76 -104.89 -0.60 -2.40 16 6 C 0.12 1.28 7.29 -38.96 -0.28 1.00 16 7 F -0.12 -1.33 16.83 2.25 0.04 -1.30 16 8 C -0.12 -0.92 10.00 -39.58 -0.40 -1.32 16 9 C -0.14 -1.22 9.02 -39.39 -0.36 -1.57 16 10 C 0.11 1.31 6.68 -39.26 -0.26 1.05 16 11 O -0.26 -3.89 10.05 -19.80 -0.20 -4.08 16 12 C 0.04 0.51 4.06 -26.20 -0.11 0.41 16 13 C 0.00 0.03 7.52 -7.55 -0.06 -0.02 16 14 N -0.46 -9.56 6.32 -246.13 -1.55 -11.12 16 15 C 0.16 3.93 4.57 -4.98 -0.02 3.90 16 16 C -0.51 -14.23 9.39 -34.44 -0.32 -14.56 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.01 -0.09 7.55 -7.55 -0.06 -0.15 16 25 C 0.14 1.82 7.30 -38.81 -0.28 1.53 16 26 F -0.11 -1.67 16.67 2.25 0.04 -1.64 16 27 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.16 1.07 5.86 -52.48 -0.31 0.77 16 32 H 0.09 0.86 5.90 -51.93 -0.31 0.55 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.20 7.91 -51.93 -0.41 0.79 16 35 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.00 0.13 7.30 -51.93 -0.38 -0.25 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -33.48 350.67 -7.27 -40.75 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -4.29 Total: -4.80 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.55 Total: -2.20 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.82 Total: -36.71 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.95 Total: -16.07 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.48 -7.27 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234675913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.354 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds