Wall clock time and date at job start Tue Mar 31 2020 15:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34744 * 116.99810 * 2 1 4 4 O 1.21498 * 120.00411 * 0.02562 * 3 2 1 5 5 C 1.47420 * 119.99585 * 180.02562 * 3 2 1 6 6 C 1.39999 * 120.17062 * 269.99794 * 5 3 2 7 7 F 1.35099 * 120.04692 * 359.97438 * 6 5 3 8 8 C 1.38143 * 119.90226 * 180.02562 * 6 5 3 9 9 C 1.38326 * 120.24835 * 0.02562 * 8 6 5 10 10 C 1.38670 * 120.34168 * 0.02562 * 9 8 6 11 11 O 1.36019 * 119.95122 * 179.97438 * 10 9 8 12 12 C 1.42904 * 116.99850 * 5.82611 * 11 10 9 13 13 C 1.53515 * 114.16716 * 156.77114 * 12 11 10 14 14 N 1.47475 * 87.92946 * 87.62212 * 13 12 11 15 15 C 1.46906 * 111.00040 * 138.70638 * 14 13 12 16 16 C 1.50693 * 109.47393 * 169.99935 * 15 14 13 17 17 H 1.08000 * 119.99931 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00093 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99938 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47296 * 269.99877 * 20 18 16 22 22 H 1.48504 * 109.47392 * 30.00109 * 20 18 16 23 23 H 1.48504 * 109.47323 * 149.99552 * 20 18 16 24 24 C 1.47473 * 87.83967 * 27.00870 * 14 13 12 25 25 C 1.38682 * 120.09294 * 0.24803 * 10 9 8 26 26 F 1.35099 * 120.11999 * 179.73111 * 25 10 9 27 27 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47179 * 299.99954 * 1 2 3 29 29 H 1.09001 * 109.47154 * 59.99692 * 1 2 3 30 30 H 1.08003 * 119.87607 * 179.97438 * 8 6 5 31 31 H 1.08003 * 119.82783 * 179.97438 * 9 8 6 32 32 H 1.09001 * 113.25686 * 23.82562 * 12 11 10 33 33 H 1.09007 * 113.47462 * 332.85401 * 13 12 11 34 34 H 1.08997 * 113.52880 * 202.40252 * 13 12 11 35 35 H 1.09000 * 109.47229 * 49.99246 * 15 14 13 36 36 H 1.09004 * 109.46586 * 289.99549 * 15 14 13 37 37 H 0.96996 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.09001 * 113.47783 * 87.75795 * 24 14 13 39 39 H 1.08997 * 113.47848 * 218.22201 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5359 1.2777 -0.0006 6 6 4.2390 1.3143 1.2095 7 9 3.5693 1.2795 2.3823 8 6 5.6185 1.3871 1.2025 9 6 6.3082 1.4245 0.0040 10 6 5.6220 1.3899 -1.2005 11 8 6.3083 1.4276 -2.3743 12 6 7.7340 1.3733 -2.2943 13 6 8.4162 0.8631 -3.5714 14 7 8.4189 2.2540 -4.0615 15 6 9.6888 2.5754 -4.7266 16 6 9.5679 3.9055 -5.4243 17 1 8.6404 4.4569 -5.3787 18 6 10.6414 4.4187 -6.1209 19 7 11.7711 3.7475 -6.1761 20 14 10.4913 6.0672 -6.9864 21 1 10.0095 5.8553 -8.3750 22 1 9.5263 6.9253 -6.2532 23 1 11.8189 6.7319 -7.0191 24 6 8.4343 2.6913 -2.6532 25 6 4.2369 1.3225 -1.2100 26 9 3.5676 1.2943 -2.3832 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 6.1605 1.4157 2.1363 31 1 7.3867 1.4818 0.0065 32 1 8.0962 0.9069 -1.3781 33 1 7.7885 0.1957 -4.1620 34 1 9.4147 0.4609 -3.4004 35 1 9.9221 1.8014 -5.4577 36 1 10.4852 2.6256 -3.9840 37 1 12.5264 4.1087 -6.6658 38 1 9.4377 2.7775 -2.2362 39 1 7.8221 3.5734 -2.4657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234675913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:20 Heat of formation + Delta-G solvation = -149.453204 kcal Electronic energy + Delta-G solvation = -27147.844155 eV Core-core repulsion = 22693.466371 eV Total energy + Delta-G solvation = -4454.377784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.27257 -50.23286 -41.91456 -41.61652 -40.02657 -38.03270 -37.63225 -35.01569 -32.78860 -31.58005 -30.44688 -28.86305 -27.46781 -26.83354 -25.78398 -24.06093 -23.74446 -22.66839 -21.01482 -19.96276 -19.06555 -18.96687 -18.64147 -18.53498 -18.02542 -17.40534 -17.32672 -16.97225 -16.88403 -16.63642 -16.34570 -16.25457 -15.73740 -15.43615 -15.18658 -14.96020 -14.83503 -14.45769 -14.00415 -13.90837 -13.61276 -13.50832 -13.44353 -13.20647 -13.02919 -12.79160 -12.61479 -12.33516 -12.19701 -12.01944 -11.99982 -11.54146 -11.48997 -11.25490 -10.61985 -10.42765 -9.56914 -9.38203 -8.23971 -6.33048 -0.63645 -0.24579 0.54997 1.26938 1.38852 1.40023 1.51282 1.82153 2.01308 2.38472 2.47626 3.00941 3.08333 3.21587 3.29061 3.32596 3.52238 3.64082 3.79114 3.88051 4.16783 4.23294 4.29794 4.39550 4.48772 4.50038 4.61384 4.63170 4.65281 4.75024 4.78141 4.85862 4.95142 4.97881 5.05277 5.27560 5.58376 5.80584 6.06555 6.16433 6.23043 6.46786 6.81052 7.36444 8.86576 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002481 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.952608 B =11285.200130 C =11726.049242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.521 3.479 4 O -0.510 6.510 5 C -0.160 4.160 6 C 0.122 3.878 7 F -0.126 7.126 8 C -0.089 4.089 9 C -0.116 4.116 10 C 0.091 3.909 11 O -0.290 6.290 12 C 0.067 3.933 13 C -0.002 4.002 14 N -0.496 5.496 15 C 0.173 3.827 16 C -0.528 4.528 17 H 0.051 0.949 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.269 1.269 23 H -0.277 1.277 24 C -0.010 4.010 25 C 0.108 3.892 26 F -0.133 7.133 27 H 0.142 0.858 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.201 0.799 31 H 0.195 0.805 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.002 0.998 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -10.818 20.354 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.364 3.636 4 O -0.399 6.399 5 C -0.163 4.163 6 C 0.102 3.898 7 F -0.104 7.104 8 C -0.108 4.108 9 C -0.134 4.134 10 C 0.044 3.956 11 O -0.203 6.203 12 C 0.011 3.989 13 C -0.131 4.131 14 N -0.219 5.219 15 C 0.046 3.954 16 C -0.566 4.566 17 H 0.069 0.931 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.201 1.201 22 H -0.194 1.194 23 H -0.202 1.202 24 C -0.139 4.139 25 C 0.088 3.912 26 F -0.111 7.111 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.218 0.782 31 H 0.212 0.788 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.020 0.980 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.004 -10.268 19.572 26.713 hybrid contribution 0.241 0.761 -0.636 1.021 sum -14.763 -9.507 18.935 25.824 Atomic orbital electron populations 1.23769 0.73369 1.06624 1.03131 1.86652 1.26087 1.30822 1.82935 1.20803 0.88530 0.82339 0.71940 1.90880 1.66802 1.36964 1.45212 1.18802 0.90479 1.13708 0.93301 1.17240 0.90725 1.03391 0.78480 1.91556 1.80841 1.93700 1.44327 1.21376 0.89777 0.98165 1.01432 1.21666 1.03321 0.99846 0.88613 1.19014 0.89180 0.99367 0.88017 1.86290 1.20458 1.86952 1.26596 1.23743 0.76877 0.97508 1.00783 1.24102 1.00397 0.93897 0.94703 1.69017 1.34122 1.06098 1.12634 1.19957 0.86202 0.95632 0.93629 1.21409 0.98078 1.04988 1.32114 0.93096 1.25828 0.94823 1.01510 0.97131 1.70039 1.03420 1.40220 1.43327 0.85459 0.77609 0.79220 0.78794 1.20128 1.19360 1.20177 1.24344 1.00703 0.98425 0.90476 1.16572 0.87571 1.07089 0.79972 1.91527 1.80403 1.93868 1.45309 0.84013 0.90983 0.91696 0.78199 0.78833 0.83483 0.89744 0.88294 0.97970 0.98797 0.92540 0.88968 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.57 113.37 1.20 1.54 16 2 O -0.35 -7.84 10.58 -56.54 -0.60 -8.44 16 3 C 0.52 14.06 6.68 70.24 0.47 14.53 16 4 O -0.51 -16.21 16.90 19.84 0.34 -15.88 16 5 C -0.16 -3.90 5.76 -20.04 -0.12 -4.02 16 6 C 0.12 2.25 7.29 22.67 0.17 2.41 16 7 F -0.13 -2.42 16.83 44.97 0.76 -1.66 16 8 C -0.09 -1.02 10.00 22.27 0.22 -0.79 16 9 C -0.12 -1.57 9.02 22.39 0.20 -1.37 16 10 C 0.09 2.10 6.68 22.48 0.15 2.25 16 11 O -0.29 -8.30 10.05 -93.76 -0.94 -9.25 16 12 C 0.07 1.62 4.06 30.94 0.13 1.75 16 13 C 0.00 -0.06 7.52 83.58 0.63 0.56 16 14 N -0.50 -20.95 6.32 -933.02 -5.89 -26.84 16 15 C 0.17 8.89 4.57 85.55 0.39 9.28 16 16 C -0.53 -30.37 9.39 25.60 0.24 -30.13 16 17 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 18 C 0.01 0.31 5.46 84.65 0.46 0.78 16 19 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 20 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.01 -0.33 7.55 83.57 0.63 0.30 16 25 C 0.11 2.90 7.30 22.77 0.17 3.06 16 26 F -0.13 -4.25 16.67 44.97 0.75 -3.50 16 27 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.19 1.32 5.86 -2.91 -0.02 1.30 16 32 H 0.15 1.94 5.90 -2.39 -0.01 1.93 16 33 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.10 2.73 7.91 -2.39 -0.02 2.71 16 35 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 36 H -0.01 -0.30 7.30 -2.38 -0.02 -0.31 16 37 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.09 2.76 7.42 -2.39 -0.02 2.74 16 39 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -76.94 350.67 2.76 -74.18 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.10 Total: -0.91 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.94 Total: 0.15 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -5.61 Total: -81.45 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.20 Total: -33.56 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.51 Total: -5.16 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.94 2.76 -74.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234675913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.273 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds