Wall clock time and date at job start Tue Mar 31 2020 15:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35872 * 117.00249 * 2 1 4 4 C 1.38763 * 119.91558 * 359.97438 * 3 2 1 5 5 C 1.38081 * 120.12130 * 179.74414 * 4 3 2 6 6 F 1.35098 * 120.03398 * 180.30027 * 5 4 3 7 7 C 1.39935 * 119.94226 * 0.55479 * 5 4 3 8 8 C 1.47838 * 120.08443 * 179.72153 * 7 5 4 9 9 C 1.40073 * 119.50711 * 129.72397 * 8 7 5 10 10 C 1.35944 * 121.18341 * 179.97438 * 9 8 7 11 11 C 1.41077 * 120.11956 * 359.97438 * 10 9 8 12 12 C 1.40377 * 120.48359 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00306 * 154.62017 * 12 11 10 14 14 C 1.40255 * 120.00292 * 334.62329 * 12 11 10 15 15 N 1.30671 * 119.99672 * 334.60517 * 14 12 11 16 16 Si 1.86803 * 120.00342 * 154.60272 * 14 12 11 17 17 H 1.48510 * 109.46908 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.46992 * 299.99986 * 16 14 12 19 19 H 1.48498 * 109.46886 * 60.00375 * 16 14 12 20 20 C 1.46670 * 119.03520 * 0.26472 * 11 10 9 21 21 C 1.43202 * 120.56015 * 179.72765 * 20 11 10 22 22 N 9.61833 * 102.58167 * 343.74589 * 2 1 3 23 23 C 1.39037 * 118.87750 * 359.47362 * 20 11 10 24 24 C 1.39695 * 119.82946 * 359.44586 * 7 5 4 25 25 C 1.38131 * 119.88525 * 0.27920 * 24 7 5 26 26 O 1.36023 * 119.97291 * 180.02562 * 25 24 7 27 27 C 1.42896 * 117.00220 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47056 * 299.99929 * 1 2 3 29 29 H 1.08998 * 109.47390 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.93994 * 0.04263 * 4 3 2 32 32 H 1.07992 * 119.40730 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.93935 * 179.97438 * 10 9 8 34 34 H 0.96995 * 119.99791 * 354.18309 * 15 14 12 35 35 H 1.07996 * 120.10691 * 180.26504 * 23 20 11 36 36 H 1.07997 * 120.05667 * 180.25143 * 24 7 5 37 37 H 1.09001 * 109.47291 * 179.97438 * 27 26 25 38 38 H 1.09000 * 109.46811 * 299.99428 * 27 26 25 39 39 H 1.08999 * 109.47914 * 59.99265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2885 2.3733 -0.0005 5 6 1.9110 3.6058 0.0048 6 9 1.1718 4.7366 0.0104 7 6 3.3082 3.6826 -0.0010 8 6 3.9779 5.0006 -0.0015 9 6 4.9890 5.2611 0.9323 10 6 5.6277 6.4608 0.9619 11 6 5.2781 7.4718 0.0422 12 6 5.9323 8.7136 0.0663 13 1 5.9832 9.3148 -0.8296 14 6 6.5200 9.1738 1.2538 15 7 6.0743 8.7546 2.4084 16 14 7.9397 10.3858 1.1848 17 1 8.3793 10.7124 2.5652 18 1 9.0705 9.7815 0.4357 19 1 7.4983 11.6267 0.4988 20 6 4.2168 7.2089 -0.9354 21 6 3.8318 8.2139 -1.8801 22 7 3.5242 9.0121 -2.6275 23 6 3.5945 5.9656 -0.9328 24 6 4.0686 2.5108 -0.0004 25 6 3.4385 1.2815 0.0000 26 8 4.1771 0.1393 0.0011 27 6 5.5986 0.2859 0.0023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2101 2.3141 -0.0003 32 1 5.2660 4.4952 1.6414 33 1 6.4042 6.6402 1.6909 34 1 5.2849 8.1925 2.4485 35 1 2.8136 5.7492 -1.6467 36 1 5.1471 2.5658 -0.0008 37 1 6.0654 -0.6991 0.0035 38 1 5.9080 0.8339 -0.8877 39 1 5.9066 0.8347 0.8922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236306856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:22 Heat of formation + Delta-G solvation = -58.576459 kcal Electronic energy + Delta-G solvation = -26425.903105 eV Core-core repulsion = 22406.235257 eV Total energy + Delta-G solvation = -4019.667847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.45250 -40.41580 -38.48907 -38.19680 -36.49991 -35.24872 -34.38484 -31.31100 -30.19139 -29.88404 -29.00249 -27.31893 -27.13226 -25.28703 -22.78267 -22.45281 -21.84120 -20.76247 -18.64997 -18.46281 -17.72312 -17.11633 -16.66527 -16.15300 -15.66052 -15.28886 -15.21910 -15.00737 -14.67186 -14.51368 -14.43768 -14.28146 -14.00408 -13.23327 -12.90782 -12.69337 -12.56311 -12.49916 -12.35393 -12.03668 -11.98099 -11.76442 -11.57348 -11.50899 -11.36556 -11.22962 -11.07498 -10.78247 -10.62025 -10.42763 -10.09191 -9.92771 -9.42702 -8.73517 -8.10999 -8.01957 -7.69355 -7.35189 -4.92475 1.23079 1.34228 2.04359 2.47209 2.96064 3.03148 3.16455 3.20481 3.27143 3.66442 3.69441 3.78621 3.99868 4.30217 4.51824 4.76730 4.93751 4.98967 5.04654 5.13814 5.16085 5.18024 5.23512 5.31506 5.36960 5.39758 5.50270 5.70961 5.79610 5.94310 6.13798 6.26480 6.40653 6.55114 6.61484 6.78316 6.92217 7.00700 7.17150 7.28956 7.35953 7.48668 7.57438 7.64109 7.78187 8.19969 8.30633 8.68939 9.51356 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003268 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.381337 B = 8565.751180 C = 9484.848905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.102 3.898 4 C -0.205 4.205 5 C 0.091 3.909 6 F -0.132 7.132 7 C -0.013 4.013 8 C -0.221 4.221 9 C -0.031 4.031 10 C -0.218 4.218 11 C 0.131 3.869 12 C -0.463 4.463 13 H 0.087 0.913 14 C 0.036 3.964 15 N -0.754 5.754 16 Si 1.066 2.934 17 H -0.268 1.268 18 H -0.268 1.268 19 H -0.270 1.270 20 C -0.188 4.188 21 C 0.298 3.702 22 N -0.503 5.503 23 C 0.019 3.981 24 C -0.151 4.151 25 C 0.093 3.907 26 O -0.308 6.308 27 C 0.025 3.975 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.308 0.692 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -14.671 0.848 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.056 3.944 4 C -0.224 4.224 5 C 0.071 3.929 6 F -0.111 7.111 7 C -0.014 4.014 8 C -0.222 4.222 9 C -0.050 4.050 10 C -0.237 4.237 11 C 0.125 3.875 12 C -0.488 4.488 13 H 0.105 0.895 14 C -0.191 4.191 15 N -0.374 5.374 16 Si 0.888 3.112 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.195 1.195 20 C -0.194 4.194 21 C -0.012 4.012 22 N -0.182 5.182 23 C -0.002 4.002 24 C -0.170 4.170 25 C 0.048 3.952 26 O -0.222 6.222 27 C -0.070 4.070 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.850 -12.984 0.704 13.134 hybrid contribution -1.299 -0.701 -0.623 1.602 sum -3.149 -13.685 0.081 14.043 Atomic orbital electron populations 1.23051 0.78855 1.03725 1.01319 1.86130 1.20777 1.25681 1.89264 1.17821 0.88760 0.84461 1.03349 1.20796 1.00477 0.90448 1.10708 1.17417 0.88676 0.81498 1.05269 1.91492 1.76409 1.49240 1.93919 1.18637 0.90063 0.93933 0.98762 1.17446 1.06693 0.92995 1.05111 1.20338 0.93405 0.96071 0.95222 1.20746 1.04411 0.93822 1.04742 1.18479 0.87229 0.92678 0.89097 1.20901 1.25960 1.02347 0.99609 0.89475 1.27420 1.01349 0.99295 0.91053 1.70413 1.18703 1.20861 1.27412 0.83594 0.74412 0.75345 0.77876 1.19187 1.19275 1.19526 1.16654 1.06062 0.92246 1.04427 1.25696 0.91520 0.92266 0.91680 1.81030 1.12440 1.11059 1.13674 1.20574 0.94459 0.90597 0.94565 1.21090 1.00547 0.89411 1.05957 1.18103 0.88017 0.86017 1.03084 1.86131 1.18693 1.28084 1.89324 1.23068 0.78671 1.03608 1.01650 0.92724 0.92754 0.88357 0.84079 0.88428 0.86668 0.87745 0.88085 0.83830 0.88431 0.92512 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.06 10.27 -33.99 -0.35 -4.40 16 3 C 0.10 1.47 6.71 -38.94 -0.26 1.21 16 4 C -0.20 -2.90 8.99 -39.44 -0.35 -3.26 16 5 C 0.09 1.52 7.14 -39.00 -0.28 1.24 16 6 F -0.13 -2.38 15.87 2.25 0.04 -2.35 16 7 C -0.01 -0.22 5.45 -104.79 -0.57 -0.79 16 8 C -0.22 -4.29 5.33 -104.82 -0.56 -4.85 16 9 C -0.03 -0.61 9.34 -39.72 -0.37 -0.98 16 10 C -0.22 -4.68 7.88 -39.33 -0.31 -4.99 16 11 C 0.13 3.05 5.46 -104.61 -0.57 2.47 16 12 C -0.46 -10.94 8.48 -38.02 -0.32 -11.26 16 13 H 0.09 2.11 7.45 -52.48 -0.39 1.72 16 14 C 0.04 0.80 4.94 -17.29 -0.09 0.71 16 15 N -0.75 -17.30 12.31 55.56 0.68 -16.62 16 16 Si 1.07 19.03 30.01 -169.99 -5.10 13.93 16 17 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 19 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 20 C -0.19 -4.28 5.93 -104.27 -0.62 -4.90 16 21 C 0.30 7.03 14.30 -22.47 -0.32 6.70 16 22 N -0.50 -12.17 18.54 41.84 0.78 -11.39 16 23 C 0.02 0.40 8.54 -38.82 -0.33 0.06 16 24 C -0.15 -2.27 8.44 -39.08 -0.33 -2.60 16 25 C 0.09 1.38 6.70 -39.17 -0.26 1.12 16 26 O -0.31 -4.24 10.28 -34.47 -0.35 -4.59 16 27 C 0.03 0.24 9.81 101.05 0.99 1.24 16 28 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 29 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.63 6.27 -52.49 -0.33 1.30 16 32 H 0.10 1.66 7.99 -52.49 -0.42 1.24 16 33 H 0.12 2.49 6.49 -52.48 -0.34 2.15 16 34 H 0.31 7.22 6.68 -40.82 -0.27 6.94 16 35 H 0.10 1.99 7.75 -52.49 -0.41 1.58 16 36 H 0.14 1.92 6.25 -52.49 -0.33 1.60 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 39 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -26.99 347.61 -6.35 -33.34 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.72 Total: 4.49 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -3.57 Total: -17.64 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 1.46 Total: -28.01 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.70 Total: -9.00 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.10 Total: 13.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.99 -6.35 -33.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236306856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.232 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds