Wall clock time and date at job start Tue Mar 31 2020 15:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35872 * 117.00249 * 2 1 4 4 C 1.38763 * 119.91558 * 359.97438 * 3 2 1 5 5 C 1.38081 * 120.12130 * 179.74414 * 4 3 2 6 6 F 1.35098 * 120.03398 * 180.30027 * 5 4 3 7 7 C 1.39935 * 119.94226 * 0.55479 * 5 4 3 8 8 C 1.47838 * 120.08443 * 179.72153 * 7 5 4 9 9 C 1.40073 * 119.50711 * 129.72397 * 8 7 5 10 10 C 1.35944 * 121.18341 * 179.97438 * 9 8 7 11 11 C 1.41077 * 120.11956 * 359.97438 * 10 9 8 12 12 C 1.40377 * 120.48359 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00306 * 154.62017 * 12 11 10 14 14 C 1.40255 * 120.00292 * 334.62329 * 12 11 10 15 15 N 1.30671 * 119.99672 * 334.60517 * 14 12 11 16 16 Si 1.86803 * 120.00342 * 154.60272 * 14 12 11 17 17 H 1.48510 * 109.46908 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.46992 * 299.99986 * 16 14 12 19 19 H 1.48498 * 109.46886 * 60.00375 * 16 14 12 20 20 C 1.46670 * 119.03520 * 0.26472 * 11 10 9 21 21 C 1.43202 * 120.56015 * 179.72765 * 20 11 10 22 22 N 9.61833 * 102.58167 * 343.74589 * 2 1 3 23 23 C 1.39037 * 118.87750 * 359.47362 * 20 11 10 24 24 C 1.39695 * 119.82946 * 359.44586 * 7 5 4 25 25 C 1.38131 * 119.88525 * 0.27920 * 24 7 5 26 26 O 1.36023 * 119.97291 * 180.02562 * 25 24 7 27 27 C 1.42896 * 117.00220 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47056 * 299.99929 * 1 2 3 29 29 H 1.08998 * 109.47390 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.93994 * 0.04263 * 4 3 2 32 32 H 1.07992 * 119.40730 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.93935 * 179.97438 * 10 9 8 34 34 H 0.96995 * 119.99791 * 354.18309 * 15 14 12 35 35 H 1.07996 * 120.10691 * 180.26504 * 23 20 11 36 36 H 1.07997 * 120.05667 * 180.25143 * 24 7 5 37 37 H 1.09001 * 109.47291 * 179.97438 * 27 26 25 38 38 H 1.09000 * 109.46811 * 299.99428 * 27 26 25 39 39 H 1.08999 * 109.47914 * 59.99265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2885 2.3733 -0.0005 5 6 1.9110 3.6058 0.0048 6 9 1.1718 4.7366 0.0104 7 6 3.3082 3.6826 -0.0010 8 6 3.9779 5.0006 -0.0015 9 6 4.9890 5.2611 0.9323 10 6 5.6277 6.4608 0.9619 11 6 5.2781 7.4718 0.0422 12 6 5.9323 8.7136 0.0663 13 1 5.9832 9.3148 -0.8296 14 6 6.5200 9.1738 1.2538 15 7 6.0743 8.7546 2.4084 16 14 7.9397 10.3858 1.1848 17 1 8.3793 10.7124 2.5652 18 1 9.0705 9.7815 0.4357 19 1 7.4983 11.6267 0.4988 20 6 4.2168 7.2089 -0.9354 21 6 3.8318 8.2139 -1.8801 22 7 3.5242 9.0121 -2.6275 23 6 3.5945 5.9656 -0.9328 24 6 4.0686 2.5108 -0.0004 25 6 3.4385 1.2815 0.0000 26 8 4.1771 0.1393 0.0011 27 6 5.5986 0.2859 0.0023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2101 2.3141 -0.0003 32 1 5.2660 4.4952 1.6414 33 1 6.4042 6.6402 1.6909 34 1 5.2849 8.1925 2.4485 35 1 2.8136 5.7492 -1.6467 36 1 5.1471 2.5658 -0.0008 37 1 6.0654 -0.6991 0.0035 38 1 5.9080 0.8339 -0.8877 39 1 5.9066 0.8347 0.8922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236306856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:21 Heat of formation + Delta-G solvation = -70.478112 kcal Electronic energy + Delta-G solvation = -26426.419199 eV Core-core repulsion = 22406.235257 eV Total energy + Delta-G solvation = -4020.183942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.79052 -41.50456 -39.86382 -39.41505 -37.78631 -37.07170 -35.96590 -32.75862 -31.81850 -31.03664 -30.34528 -28.33621 -28.04449 -26.75977 -24.35724 -23.82917 -23.06265 -22.23747 -20.23452 -19.70661 -19.01291 -18.25859 -18.04892 -17.17757 -16.88657 -16.72940 -16.44731 -16.21609 -16.09680 -15.79035 -15.55290 -15.45397 -15.39786 -14.78243 -14.56813 -14.31086 -13.96937 -13.77616 -13.65893 -13.58614 -13.39570 -13.11598 -12.93204 -12.70696 -12.61940 -12.38063 -12.12257 -12.06025 -11.96453 -11.79653 -11.58140 -11.53432 -11.05337 -9.99686 -9.76145 -9.57076 -9.35158 -8.65238 -6.67968 0.00363 0.13375 0.31548 0.88080 1.50140 1.59901 1.79462 1.91416 2.19157 2.23107 2.26898 2.32992 2.49780 2.60223 3.30358 3.41926 3.43906 3.73218 3.81539 4.06394 4.14060 4.16099 4.38203 4.39996 4.42292 4.46471 4.46781 4.61390 4.74655 4.80078 4.83085 4.88220 4.90981 5.06257 5.17906 5.23640 5.46595 5.49737 5.59135 5.71650 5.81801 5.96139 6.05741 6.10408 6.47237 6.53989 6.59010 6.83607 7.77049 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003268 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.381337 B = 8565.751180 C = 9484.848905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.107 3.893 4 C -0.197 4.197 5 C 0.076 3.924 6 F -0.145 7.145 7 C -0.039 4.039 8 C -0.201 4.201 9 C -0.025 4.025 10 C -0.224 4.224 11 C 0.116 3.884 12 C -0.498 4.498 13 H 0.070 0.930 14 C 0.012 3.988 15 N -0.770 5.770 16 Si 1.111 2.889 17 H -0.261 1.261 18 H -0.255 1.255 19 H -0.268 1.268 20 C -0.209 4.209 21 C 0.301 3.699 22 N -0.524 5.524 23 C 0.012 3.988 24 C -0.142 4.142 25 C 0.090 3.910 26 O -0.320 6.320 27 C 0.015 3.985 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.167 0.833 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.296 0.704 35 H 0.109 0.891 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -17.284 1.324 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.061 3.939 4 C -0.217 4.217 5 C 0.057 3.943 6 F -0.124 7.124 7 C -0.041 4.041 8 C -0.202 4.202 9 C -0.043 4.043 10 C -0.244 4.244 11 C 0.111 3.889 12 C -0.524 4.524 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.390 5.390 16 Si 0.927 3.073 17 H -0.185 1.185 18 H -0.179 1.179 19 H -0.193 1.193 20 C -0.215 4.215 21 C -0.007 4.007 22 N -0.203 5.203 23 C -0.009 4.009 24 C -0.161 4.161 25 C 0.044 3.956 26 O -0.234 6.234 27 C -0.079 4.079 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.184 0.816 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.176 0.824 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.911 -15.628 1.173 15.789 hybrid contribution -1.452 -0.270 -0.793 1.676 sum -3.363 -15.899 0.380 16.255 Atomic orbital electron populations 1.23415 0.76429 1.05859 1.02313 1.86132 1.23297 1.24957 1.88781 1.18021 0.89041 0.85049 1.01771 1.20954 1.01795 0.89274 1.09640 1.17626 0.88575 0.81943 1.06176 1.91460 1.76680 1.50099 1.94167 1.18556 0.90523 0.93332 1.01662 1.17722 1.05455 0.93666 1.03397 1.20633 0.92599 0.95892 0.95216 1.20755 1.04854 0.94227 1.04518 1.18740 0.87289 0.93205 0.89677 1.20937 1.28604 1.03033 0.99778 0.91134 1.28531 1.02535 0.99805 0.90170 1.70507 1.18832 1.21957 1.27658 0.83066 0.72345 0.73671 0.78257 1.18466 1.17932 1.19259 1.16850 1.06832 0.92996 1.04846 1.25953 0.91082 0.92165 0.91538 1.80997 1.13307 1.11530 1.14504 1.20719 0.94612 0.90304 0.95250 1.21139 1.01162 0.88798 1.04983 1.18242 0.88568 0.86264 1.02547 1.86132 1.20630 1.27632 1.89030 1.23385 0.76674 1.05581 1.02286 0.91663 0.91736 0.85847 0.81556 0.85467 0.87023 0.89019 0.87346 0.82359 0.85890 0.91976 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.49 10.27 -78.10 -0.80 -8.29 16 3 C 0.11 2.82 6.71 22.69 0.15 2.98 16 4 C -0.20 -5.10 8.99 22.36 0.20 -4.90 16 5 C 0.08 2.43 7.14 22.64 0.16 2.59 16 6 F -0.15 -5.14 15.87 44.97 0.71 -4.42 16 7 C -0.04 -1.29 5.45 -19.97 -0.11 -1.40 16 8 C -0.20 -7.63 5.33 -19.99 -0.11 -7.73 16 9 C -0.02 -0.93 9.34 22.18 0.21 -0.72 16 10 C -0.22 -9.70 7.88 22.43 0.18 -9.52 16 11 C 0.12 5.57 5.46 -19.86 -0.11 5.46 16 12 C -0.50 -24.39 8.48 23.28 0.20 -24.20 16 13 H 0.07 3.59 7.45 -2.91 -0.02 3.57 16 14 C 0.01 0.55 4.94 85.36 0.42 0.97 16 15 N -0.77 -36.01 12.31 21.88 0.27 -35.74 16 16 Si 1.11 38.55 30.01 68.60 2.06 40.61 16 17 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 18 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 19 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 20 C -0.21 -9.77 5.93 -19.64 -0.12 -9.88 16 21 C 0.30 14.66 14.30 88.33 1.26 15.92 16 22 N -0.52 -26.03 18.54 19.00 0.35 -25.68 16 23 C 0.01 0.50 8.54 22.76 0.19 0.69 16 24 C -0.14 -3.94 8.44 22.60 0.19 -3.74 16 25 C 0.09 2.42 6.70 22.53 0.15 2.57 16 26 O -0.32 -7.91 10.28 -79.79 -0.82 -8.73 16 27 C 0.01 0.25 9.81 113.37 1.11 1.36 16 28 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 29 H 0.06 0.79 7.65 -2.39 -0.02 0.78 16 30 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.17 3.33 6.27 -2.91 -0.02 3.31 16 32 H 0.13 4.02 7.99 -2.91 -0.02 4.00 16 33 H 0.11 4.88 6.49 -2.91 -0.02 4.86 16 34 H 0.30 14.31 6.68 -92.71 -0.62 13.69 16 35 H 0.11 4.29 7.75 -2.91 -0.02 4.26 16 36 H 0.16 3.80 6.25 -2.91 -0.02 3.78 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 39 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 Total: -1.00 -59.22 347.61 8.14 -51.08 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.27 Total: 19.42 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.10 Total: -28.25 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.62 Total: -61.42 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.62 Total: -17.02 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.71 Total: -4.42 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.06 Total: 40.61 kcal Total: -59.22 8.14 -51.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236306856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.398 kcal (2) G-P(sol) polarization free energy of solvation -59.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds