Wall clock time and date at job start Tue Mar 31 2020 15:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35938 * 117.00109 * 2 1 4 4 C 1.38670 * 119.93029 * 359.97438 * 3 2 1 5 5 C 1.38189 * 120.10024 * 179.76947 * 4 3 2 6 6 F 1.35095 * 120.01470 * 180.25689 * 5 4 3 7 7 C 1.39627 * 119.96590 * 0.48387 * 5 4 3 8 8 C 1.48219 * 120.06610 * 179.79398 * 7 5 4 9 9 C 1.39865 * 119.53937 * 129.72071 * 8 7 5 10 10 C 1.37681 * 121.16522 * 179.97438 * 9 8 7 11 11 C 1.39614 * 120.18818 * 0.28605 * 10 9 8 12 12 C 1.43201 * 120.44730 * 179.70428 * 11 10 9 13 13 N 9.62691 * 147.99925 * 181.27153 * 3 1 2 14 14 C 1.46553 * 119.09346 * 359.43908 * 11 10 9 15 15 C 1.40856 * 120.54741 * 180.28921 * 14 11 10 16 16 H 1.07996 * 119.99623 * 330.39376 * 15 14 11 17 17 C 1.40227 * 119.99411 * 150.39590 * 15 14 11 18 18 N 1.30671 * 119.99512 * 161.88970 * 17 15 14 19 19 Si 1.86797 * 120.00332 * 341.89036 * 17 15 14 20 20 H 1.48501 * 109.47028 * 95.39449 * 19 17 15 21 21 H 1.48500 * 109.46909 * 215.39278 * 19 17 15 22 22 H 1.48501 * 109.47162 * 335.39150 * 19 17 15 23 23 C 1.38659 * 119.53822 * 309.70441 * 8 7 5 24 24 C 1.39444 * 119.86320 * 359.51585 * 7 5 4 25 25 C 1.38251 * 119.90571 * 0.25501 * 24 7 5 26 26 O 1.36038 * 119.98995 * 180.02562 * 25 24 7 27 27 C 1.42894 * 117.00030 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47122 * 300.00318 * 1 2 3 29 29 H 1.09002 * 109.47500 * 59.99923 * 1 2 3 30 30 H 1.08998 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.95246 * 0.04355 * 4 3 2 32 32 H 1.07998 * 119.41521 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.90528 * 179.97438 * 10 9 8 34 34 H 0.96992 * 119.99536 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.13738 * 0.02562 * 23 8 7 36 36 H 1.08008 * 120.04973 * 180.23284 * 24 7 5 37 37 H 1.09000 * 109.47560 * 180.02562 * 27 26 25 38 38 H 1.09004 * 109.47329 * 300.01128 * 27 26 25 39 39 H 1.09003 * 109.46946 * 60.00522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2895 2.3733 -0.0005 5 6 1.9132 3.6064 0.0043 6 9 1.1743 4.7374 0.0090 7 6 3.3073 3.6828 -0.0005 8 6 3.9786 5.0042 0.0000 9 6 4.9876 5.2648 0.9329 10 6 5.6336 6.4802 0.9630 11 6 5.2840 7.4837 0.0575 12 6 5.9479 8.7521 0.0879 13 7 6.4734 9.7589 0.1132 14 6 4.2324 7.2191 -0.9284 15 6 3.8597 8.2074 -1.8603 16 1 3.9500 9.2526 -1.6040 17 6 3.3713 7.8340 -3.1206 18 7 2.7037 8.6937 -3.8435 19 14 3.6751 6.1076 -3.7661 20 1 2.5015 5.2509 -3.4597 21 1 3.8810 6.1578 -5.2358 22 1 4.8843 5.5417 -3.1159 23 6 3.5978 5.9648 -0.9247 24 6 4.0668 2.5133 0.0000 25 6 3.4371 1.2825 0.0000 26 8 4.1764 0.1405 0.0011 27 6 5.5977 0.2878 0.0017 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2111 2.3146 -0.0002 32 1 5.2647 4.4990 1.6422 33 1 6.4095 6.6597 1.6925 34 1 2.3662 8.4355 -4.7154 35 1 2.8171 5.7501 -1.6393 36 1 5.1455 2.5689 0.0001 37 1 6.0651 -0.6969 0.0020 38 1 5.9066 0.8359 -0.8885 39 1 5.9057 0.8368 0.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236307783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:15 Heat of formation + Delta-G solvation = -48.110796 kcal Electronic energy + Delta-G solvation = -26881.840002 eV Core-core repulsion = 22862.625980 eV Total energy + Delta-G solvation = -4019.214022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -48.54971 -40.55492 -38.58221 -38.21630 -36.54921 -35.15895 -34.04664 -31.77337 -30.78645 -30.05278 -28.98580 -27.36312 -26.90651 -25.70342 -23.31814 -22.40895 -21.43419 -20.87900 -18.66250 -17.88967 -17.71884 -17.33573 -17.11487 -16.24657 -15.94385 -15.40090 -15.35577 -15.16248 -14.71448 -14.62595 -14.44423 -14.23251 -13.72269 -13.43989 -13.04157 -12.76630 -12.74283 -12.54307 -12.39482 -12.16492 -11.98285 -11.74837 -11.68050 -11.54259 -11.38641 -11.29964 -11.08056 -10.95858 -10.73943 -10.38767 -10.17491 -9.94537 -9.42391 -8.84996 -8.08660 -7.96413 -7.39934 -7.31699 -4.85089 1.01640 1.18921 1.92909 2.44031 2.92978 3.00743 3.09438 3.11118 3.17803 3.50731 3.71358 3.81308 3.94068 4.37419 4.39130 4.66636 4.77896 4.90863 4.99861 5.04251 5.09655 5.11723 5.16192 5.25633 5.26417 5.32322 5.43388 5.57449 5.72014 5.89204 6.07167 6.10156 6.23946 6.34394 6.50771 6.62623 6.82686 6.89003 6.93522 7.22476 7.33397 7.44863 7.49399 7.68569 7.95312 8.22752 8.36958 8.70166 9.67033 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.004339 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.988127 B = 6451.535029 C = 7309.083614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.118 3.882 4 C -0.211 4.211 5 C 0.114 3.886 6 F -0.124 7.124 7 C -0.059 4.059 8 C 0.006 3.994 9 C -0.237 4.237 10 C -0.016 4.016 11 C -0.167 4.167 12 C 0.296 3.704 13 N -0.497 5.497 14 C 0.126 3.874 15 C -0.412 4.412 16 H 0.099 0.901 17 C 0.084 3.916 18 N -0.773 5.773 19 Si 0.905 3.095 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.235 1.235 23 C -0.205 4.205 24 C -0.134 4.134 25 C 0.088 3.912 26 O -0.306 6.306 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.294 0.706 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -18.949 4.305 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.073 3.927 4 C -0.231 4.231 5 C 0.094 3.906 6 F -0.102 7.102 7 C -0.060 4.060 8 C 0.006 3.994 9 C -0.256 4.256 10 C -0.036 4.036 11 C -0.172 4.172 12 C -0.014 4.014 13 N -0.175 5.175 14 C 0.120 3.880 15 C -0.438 4.438 16 H 0.117 0.883 17 C -0.140 4.140 18 N -0.394 5.394 19 Si 0.730 3.270 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.158 1.158 23 C -0.224 4.224 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.220 6.220 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.147 -17.581 4.104 18.181 hybrid contribution -0.554 -0.415 -0.481 0.843 sum -2.701 -17.996 3.623 18.554 Atomic orbital electron populations 1.23097 0.78565 1.03945 1.01513 1.86160 1.21039 1.25472 1.88923 1.17855 0.88828 0.84582 1.01469 1.20855 1.00837 0.90281 1.11089 1.17312 0.88389 0.81862 1.03044 1.91548 1.76273 1.48854 1.93564 1.18866 0.90783 0.94385 1.01976 1.18184 0.95177 0.89998 0.96088 1.20061 1.03192 0.98111 1.04236 1.20480 0.96309 0.91916 0.94941 1.16903 1.03360 0.89207 1.07755 1.25672 0.91793 0.92503 0.91461 1.81039 1.12951 1.11817 1.11721 1.18350 0.87748 0.91216 0.90690 1.19676 1.31284 0.96106 0.96757 0.88307 1.26362 0.90697 1.00233 0.96732 1.69595 1.21080 1.37416 1.11259 0.86369 0.82152 0.80941 0.77567 1.18730 1.20923 1.15809 1.21018 1.03828 0.94776 1.02746 1.21041 1.00776 0.89226 1.04204 1.18061 0.88081 0.86060 1.03581 1.86149 1.18765 1.27793 1.89319 1.23099 0.78552 1.03774 1.01711 0.92545 0.92550 0.88173 0.83587 0.87743 0.87489 0.89487 0.87117 0.83333 0.88293 0.92441 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.83 10.27 -34.24 -0.35 -4.18 16 3 C 0.12 1.65 6.70 -39.03 -0.26 1.39 16 4 C -0.21 -2.93 9.00 -39.44 -0.35 -3.28 16 5 C 0.11 1.90 7.13 -39.08 -0.28 1.62 16 6 F -0.12 -2.29 15.85 2.25 0.04 -2.25 16 7 C -0.06 -1.01 5.45 -104.83 -0.57 -1.58 16 8 C 0.01 0.13 5.31 -105.03 -0.56 -0.43 16 9 C -0.24 -4.22 9.41 -39.18 -0.37 -4.59 16 10 C -0.02 -0.29 9.74 -39.27 -0.38 -0.67 16 11 C -0.17 -3.65 5.95 -104.11 -0.62 -4.27 16 12 C 0.30 6.79 14.35 -22.47 -0.32 6.47 16 13 N -0.50 -11.86 18.54 41.84 0.78 -11.08 16 14 C 0.13 2.95 5.26 -104.68 -0.55 2.40 16 15 C -0.41 -10.48 9.03 -37.84 -0.34 -10.82 16 16 H 0.10 2.73 7.64 -52.49 -0.40 2.33 16 17 C 0.08 2.05 5.41 -17.30 -0.09 1.96 16 18 N -0.77 -19.17 13.92 55.56 0.77 -18.40 16 19 Si 0.91 19.12 24.53 -169.99 -4.17 14.95 16 20 H -0.26 -5.40 6.72 56.52 0.38 -5.02 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.24 -4.98 6.86 56.52 0.39 -4.59 16 23 C -0.20 -4.49 5.95 -38.55 -0.23 -4.72 16 24 C -0.13 -1.94 8.44 -39.13 -0.33 -2.27 16 25 C 0.09 1.24 6.69 -39.19 -0.26 0.98 16 26 O -0.31 -3.99 10.27 -34.55 -0.36 -4.34 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.15 1.63 6.27 -52.49 -0.33 1.30 16 32 H 0.10 1.58 8.00 -52.49 -0.42 1.16 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 35 H 0.11 2.48 4.44 -52.49 -0.23 2.25 16 36 H 0.15 1.86 6.25 -52.48 -0.33 1.53 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 39 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -28.49 343.38 -5.40 -33.89 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.74 Total: 1.65 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.54 Total: -15.41 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 1.55 Total: -29.48 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.71 Total: -8.53 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.17 Total: 14.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.49 -5.40 -33.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236307783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.220 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds