Wall clock time and date at job start Tue Mar 31 2020 15:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35938 * 117.00109 * 2 1 4 4 C 1.38670 * 119.93029 * 359.97438 * 3 2 1 5 5 C 1.38189 * 120.10024 * 179.76947 * 4 3 2 6 6 F 1.35095 * 120.01470 * 180.25689 * 5 4 3 7 7 C 1.39627 * 119.96590 * 0.48387 * 5 4 3 8 8 C 1.48219 * 120.06610 * 179.79398 * 7 5 4 9 9 C 1.39865 * 119.53937 * 129.72071 * 8 7 5 10 10 C 1.37681 * 121.16522 * 179.97438 * 9 8 7 11 11 C 1.39614 * 120.18818 * 0.28605 * 10 9 8 12 12 C 1.43201 * 120.44730 * 179.70428 * 11 10 9 13 13 N 9.62691 * 147.99925 * 181.27153 * 3 1 2 14 14 C 1.46553 * 119.09346 * 359.43908 * 11 10 9 15 15 C 1.40856 * 120.54741 * 180.28921 * 14 11 10 16 16 H 1.07996 * 119.99623 * 330.39376 * 15 14 11 17 17 C 1.40227 * 119.99411 * 150.39590 * 15 14 11 18 18 N 1.30671 * 119.99512 * 161.88970 * 17 15 14 19 19 Si 1.86797 * 120.00332 * 341.89036 * 17 15 14 20 20 H 1.48501 * 109.47028 * 95.39449 * 19 17 15 21 21 H 1.48500 * 109.46909 * 215.39278 * 19 17 15 22 22 H 1.48501 * 109.47162 * 335.39150 * 19 17 15 23 23 C 1.38659 * 119.53822 * 309.70441 * 8 7 5 24 24 C 1.39444 * 119.86320 * 359.51585 * 7 5 4 25 25 C 1.38251 * 119.90571 * 0.25501 * 24 7 5 26 26 O 1.36038 * 119.98995 * 180.02562 * 25 24 7 27 27 C 1.42894 * 117.00030 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47122 * 300.00318 * 1 2 3 29 29 H 1.09002 * 109.47500 * 59.99923 * 1 2 3 30 30 H 1.08998 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.95246 * 0.04355 * 4 3 2 32 32 H 1.07998 * 119.41521 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.90528 * 179.97438 * 10 9 8 34 34 H 0.96992 * 119.99536 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.13738 * 0.02562 * 23 8 7 36 36 H 1.08008 * 120.04973 * 180.23284 * 24 7 5 37 37 H 1.09000 * 109.47560 * 180.02562 * 27 26 25 38 38 H 1.09004 * 109.47329 * 300.01128 * 27 26 25 39 39 H 1.09003 * 109.46946 * 60.00522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2895 2.3733 -0.0005 5 6 1.9132 3.6064 0.0043 6 9 1.1743 4.7374 0.0090 7 6 3.3073 3.6828 -0.0005 8 6 3.9786 5.0042 0.0000 9 6 4.9876 5.2648 0.9329 10 6 5.6336 6.4802 0.9630 11 6 5.2840 7.4837 0.0575 12 6 5.9479 8.7521 0.0879 13 7 6.4734 9.7589 0.1132 14 6 4.2324 7.2191 -0.9284 15 6 3.8597 8.2074 -1.8603 16 1 3.9500 9.2526 -1.6040 17 6 3.3713 7.8340 -3.1206 18 7 2.7037 8.6937 -3.8435 19 14 3.6751 6.1076 -3.7661 20 1 2.5015 5.2509 -3.4597 21 1 3.8810 6.1578 -5.2358 22 1 4.8843 5.5417 -3.1159 23 6 3.5978 5.9648 -0.9247 24 6 4.0668 2.5133 0.0000 25 6 3.4371 1.2825 0.0000 26 8 4.1764 0.1405 0.0011 27 6 5.5977 0.2878 0.0017 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2111 2.3146 -0.0002 32 1 5.2647 4.4990 1.6422 33 1 6.4095 6.6597 1.6925 34 1 2.3662 8.4355 -4.7154 35 1 2.8171 5.7501 -1.6393 36 1 5.1455 2.5689 0.0001 37 1 6.0651 -0.6969 0.0020 38 1 5.9066 0.8359 -0.8885 39 1 5.9057 0.8368 0.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236307783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:14 Heat of formation + Delta-G solvation = -63.531027 kcal Electronic energy + Delta-G solvation = -26882.508674 eV Core-core repulsion = 22862.625980 eV Total energy + Delta-G solvation = -4019.882694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.85848 -41.57571 -39.83377 -39.42574 -37.81153 -36.89856 -35.76211 -33.18662 -32.44490 -31.10113 -30.17906 -28.05759 -27.96732 -27.38257 -24.69167 -23.59600 -22.83735 -22.31988 -19.74900 -19.49739 -19.28417 -18.51089 -18.27155 -17.31156 -17.19240 -16.74198 -16.44664 -16.14025 -16.05350 -15.93152 -15.56468 -15.47697 -15.34312 -14.78662 -14.65918 -14.49496 -13.98273 -13.72384 -13.65879 -13.58245 -13.45694 -13.22746 -13.08692 -12.77752 -12.64744 -12.39362 -12.37505 -12.14280 -12.04214 -11.84274 -11.72566 -11.53848 -11.11081 -10.00512 -9.66383 -9.43503 -9.10592 -8.66231 -6.69905 -0.28253 0.07195 0.42864 0.80035 1.21966 1.33146 1.43473 1.96786 2.01187 2.14702 2.22243 2.30959 2.49304 2.56035 3.24368 3.40783 3.46162 3.60065 3.68041 4.00995 4.09227 4.18049 4.37182 4.42260 4.45160 4.50449 4.50929 4.62933 4.66893 4.72840 4.79746 4.83685 4.88465 4.98067 5.09250 5.17281 5.29806 5.45630 5.63889 5.69581 5.84519 5.99629 6.02503 6.15694 6.46514 6.50388 6.56910 6.87961 7.96039 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.004339 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.988127 B = 6451.535029 C = 7309.083614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.204 4.204 5 C 0.091 3.909 6 F -0.143 7.143 7 C -0.085 4.085 8 C 0.015 3.985 9 C -0.211 4.211 10 C -0.008 4.008 11 C -0.181 4.181 12 C 0.302 3.698 13 N -0.521 5.521 14 C 0.120 3.880 15 C -0.458 4.458 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.819 5.819 19 Si 0.953 3.047 20 H -0.256 1.256 21 H -0.270 1.270 22 H -0.235 1.235 23 C -0.223 4.223 24 C -0.125 4.125 25 C 0.088 3.912 26 O -0.318 6.318 27 C 0.012 3.988 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.302 0.698 35 H 0.101 0.899 36 H 0.170 0.830 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -23.365 5.925 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.228 6.228 3 C 0.076 3.924 4 C -0.223 4.223 5 C 0.072 3.928 6 F -0.121 7.121 7 C -0.086 4.086 8 C 0.015 3.985 9 C -0.230 4.230 10 C -0.028 4.028 11 C -0.187 4.187 12 C -0.007 4.007 13 N -0.200 5.200 14 C 0.115 3.885 15 C -0.485 4.485 16 H 0.074 0.926 17 C -0.166 4.166 18 N -0.443 5.443 19 Si 0.774 3.226 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.158 1.158 23 C -0.242 4.242 24 C -0.143 4.143 25 C 0.042 3.958 26 O -0.232 6.232 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.188 0.812 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.377 -22.004 5.735 22.781 hybrid contribution -0.761 0.665 -0.731 1.247 sum -2.138 -21.340 5.004 22.023 Atomic orbital electron populations 1.23449 0.76280 1.06011 1.02433 1.86163 1.23417 1.24749 1.88443 1.18047 0.89211 0.85037 1.00151 1.21005 1.02087 0.89182 1.10070 1.17611 0.88538 0.82198 1.04498 1.91503 1.76707 1.49990 1.93919 1.18796 0.91075 0.93915 1.04817 1.18500 0.94762 0.90571 0.94714 1.20609 1.00883 0.98347 1.03114 1.20891 0.96620 0.90990 0.94299 1.17206 1.03392 0.89615 1.08489 1.25969 0.91322 0.92661 0.90792 1.81018 1.14044 1.12347 1.12624 1.18469 0.87972 0.91605 0.90486 1.19523 1.35578 0.94593 0.98850 0.92592 1.26976 0.90073 1.03197 0.96345 1.69621 1.23190 1.39174 1.12280 0.85657 0.82025 0.77307 0.77603 1.18113 1.19588 1.15796 1.20971 1.04243 0.95019 1.04014 1.21142 1.01604 0.88344 1.03257 1.18192 0.88510 0.86380 1.02732 1.86156 1.20791 1.27304 1.88964 1.23440 0.76446 1.05747 1.02569 0.91399 0.91802 0.85697 0.81305 0.83479 0.83820 0.88680 0.88102 0.81222 0.85934 0.91927 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.31 -6.93 10.27 -78.81 -0.81 -7.74 16 3 C 0.12 3.03 6.70 22.63 0.15 3.18 16 4 C -0.20 -5.15 9.00 22.36 0.20 -4.95 16 5 C 0.09 2.89 7.13 22.59 0.16 3.05 16 6 F -0.14 -5.22 15.85 44.97 0.71 -4.51 16 7 C -0.08 -2.67 5.45 -20.00 -0.11 -2.78 16 8 C 0.02 0.56 5.31 -20.13 -0.11 0.46 16 9 C -0.21 -6.63 9.41 22.53 0.21 -6.41 16 10 C -0.01 -0.26 9.74 22.47 0.22 -0.04 16 11 C -0.18 -7.88 5.95 -19.53 -0.12 -7.99 16 12 C 0.30 14.08 14.35 88.33 1.27 15.34 16 13 N -0.52 -25.42 18.54 19.00 0.35 -25.07 16 14 C 0.12 5.77 5.26 -19.90 -0.10 5.67 16 15 C -0.46 -24.88 9.03 23.39 0.21 -24.67 16 16 H 0.06 3.40 7.64 -2.91 -0.02 3.37 16 17 C 0.05 2.76 5.41 85.35 0.46 3.22 16 18 N -0.82 -43.28 13.92 21.87 0.30 -42.98 16 19 Si 0.95 40.17 24.53 68.60 1.68 41.86 16 20 H -0.26 -10.40 6.72 99.48 0.67 -9.73 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.24 -9.74 6.86 99.48 0.68 -9.06 16 23 C -0.22 -9.76 5.95 22.94 0.14 -9.62 16 24 C -0.12 -3.15 8.44 22.56 0.19 -2.96 16 25 C 0.09 2.18 6.69 22.53 0.15 2.33 16 26 O -0.32 -7.09 10.27 -79.94 -0.82 -7.91 16 27 C 0.01 0.16 9.81 113.37 1.11 1.28 16 28 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 29 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.17 3.30 6.27 -2.91 -0.02 3.29 16 32 H 0.15 3.49 8.00 -2.91 -0.02 3.46 16 33 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.30 14.15 8.29 -92.71 -0.77 13.38 16 35 H 0.10 4.58 4.44 -2.91 -0.01 4.57 16 36 H 0.17 3.41 6.25 -2.91 -0.02 3.39 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.80 7.66 -2.38 -0.02 0.79 16 39 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 Total: -1.00 -65.91 343.38 7.63 -58.28 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.06 Total: 11.69 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 5.15 Total: -23.62 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: 0.66 Total: -68.05 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.63 Total: -15.65 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.71 Total: -4.51 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.68 Total: 41.86 kcal Total: -65.91 7.63 -58.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236307783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.249 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds