Wall clock time and date at job start Tue Mar 31 2020 15:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00224 * 2 1 4 4 O 1.42893 * 109.46926 * 75.00172 * 3 2 1 5 5 C 1.35911 * 117.00219 * 75.00287 * 4 3 2 6 6 C 1.38786 * 119.93491 * 359.97438 * 5 4 3 7 7 C 1.37914 * 120.09249 * 180.02562 * 6 5 4 8 8 C 1.39430 * 119.97434 * 0.02562 * 7 6 5 9 9 C 1.48256 * 120.06433 * 179.97438 * 8 7 6 10 10 C 1.39846 * 119.54099 * 359.97438 * 9 8 7 11 11 C 1.37692 * 121.17175 * 180.02562 * 10 9 8 12 12 C 1.39589 * 120.18951 * 359.97438 * 11 10 9 13 13 C 1.43199 * 120.45743 * 180.02562 * 12 11 10 14 14 N 9.62412 * 136.59782 * 282.02159 * 5 1 2 15 15 C 1.46550 * 119.09191 * 0.27731 * 12 11 10 16 16 C 1.40848 * 120.55272 * 179.72291 * 15 12 11 17 17 H 1.07999 * 119.99812 * 24.39535 * 16 15 12 18 18 C 1.40236 * 119.99949 * 204.39426 * 16 15 12 19 19 N 1.30658 * 119.99729 * 17.28616 * 18 16 15 20 20 Si 1.86798 * 119.99928 * 197.28824 * 18 16 15 21 21 H 1.48502 * 109.47109 * 89.99807 * 20 18 16 22 22 H 1.48499 * 109.46984 * 210.00146 * 20 18 16 23 23 H 1.48506 * 109.47090 * 330.00109 * 20 18 16 24 24 C 1.38643 * 119.54080 * 180.02562 * 9 8 7 25 25 C 1.39430 * 119.87199 * 0.25168 * 8 7 6 26 26 C 1.38069 * 119.90459 * 359.48990 * 25 8 7 27 27 F 1.35100 * 119.98468 * 180.25161 * 26 25 8 28 28 H 1.09001 * 109.47053 * 299.99831 * 1 2 3 29 29 H 1.08998 * 109.47239 * 59.99822 * 1 2 3 30 30 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46846 * 315.00029 * 3 2 1 32 32 H 1.09000 * 109.46926 * 195.00065 * 3 2 1 33 33 H 1.08003 * 119.95595 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.01432 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.41350 * 0.03952 * 10 9 8 36 36 H 1.08001 * 119.90282 * 179.97438 * 11 10 9 37 37 H 0.97003 * 119.99667 * 184.65805 * 19 18 16 38 38 H 1.07994 * 120.13004 * 359.97438 * 24 9 8 39 39 H 1.08001 * 120.04411 * 179.74879 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7189 1.4130 2.2669 6 6 3.6369 0.4168 1.9651 7 6 4.4837 -0.0622 2.9425 8 6 4.4176 0.4543 4.2359 9 6 5.3266 -0.0596 5.2883 10 6 6.2476 -1.0639 4.9738 11 6 7.1072 -1.5660 5.9250 12 6 7.0728 -1.0750 7.2312 13 6 7.9646 -1.5927 8.2249 14 7 8.6720 -2.0033 9.0132 15 6 6.1078 -0.0264 7.5732 16 6 6.0426 0.4870 8.8831 17 1 6.9061 0.4293 9.5293 18 6 4.8566 1.0732 9.3483 19 7 3.7303 0.8527 8.7237 20 14 4.8871 2.1692 10.8606 21 1 5.1277 3.5753 10.4481 22 1 3.5834 2.0762 11.5656 23 1 5.9745 1.7273 11.7704 24 6 5.2512 0.4614 6.5709 25 6 3.4909 1.4510 4.5391 26 6 2.6492 1.9306 3.5554 27 9 1.7541 2.8999 3.8461 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.4942 1.9329 -0.7266 32 1 3.0648 1.2336 -0.2660 33 1 3.6881 0.0162 0.9635 34 1 5.1979 -0.8372 2.7062 35 1 6.2854 -1.4524 3.9667 36 1 7.8100 -2.3419 5.6596 37 1 2.9226 1.3109 9.0040 38 1 4.5349 1.2365 6.7999 39 1 3.4345 1.8503 5.5411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242113999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:26 Heat of formation + Delta-G solvation = -64.077394 kcal Electronic energy + Delta-G solvation = -26145.417861 eV Core-core repulsion = 22125.511475 eV Total energy + Delta-G solvation = -4019.906386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.52053 -40.19674 -38.62891 -37.44148 -36.43763 -35.08114 -34.13479 -31.48250 -30.71950 -29.84523 -28.37227 -27.68130 -25.92116 -25.47176 -23.09691 -22.74348 -20.89993 -20.73828 -18.61922 -17.82728 -17.46623 -17.14711 -17.03930 -16.15644 -15.83852 -15.46670 -15.35242 -15.26714 -14.67035 -14.17570 -13.95325 -13.73583 -13.56427 -13.39134 -12.88829 -12.76387 -12.65721 -12.47618 -12.20543 -12.06887 -11.74849 -11.67859 -11.55306 -11.35517 -11.29624 -11.22046 -11.04267 -10.73432 -10.59220 -10.37563 -10.06752 -9.74769 -9.53618 -8.75418 -8.41901 -7.83525 -7.28289 -7.03059 -4.77056 1.12180 1.41691 2.28511 2.61078 2.91688 2.95959 3.03156 3.04225 3.42597 3.67961 3.75022 3.89260 4.32937 4.41386 4.41989 4.65735 4.82341 4.98055 5.04120 5.08991 5.17310 5.35334 5.37919 5.42802 5.45513 5.55059 5.72704 5.93431 6.09795 6.16177 6.35808 6.42138 6.50602 6.57042 6.67184 6.79491 6.86472 6.96249 7.14514 7.34716 7.43331 7.60378 7.69762 7.81489 8.14368 8.37654 8.47460 8.79574 9.70978 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003355 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.347380 B = 8343.666071 C = 9944.608663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.394 6.394 3 C 0.212 3.788 4 O -0.328 6.328 5 C 0.076 3.924 6 C -0.168 4.168 7 C -0.090 4.090 8 C -0.021 4.021 9 C -0.019 4.019 10 C -0.236 4.236 11 C -0.027 4.027 12 C -0.185 4.185 13 C 0.299 3.701 14 N -0.509 5.509 15 C 0.149 3.851 16 C -0.427 4.427 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.764 5.764 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.141 4.141 25 C -0.113 4.113 26 C 0.071 3.929 27 F -0.138 7.138 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.292 0.708 38 H 0.132 0.868 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 3.389 -15.938 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.314 6.314 3 C 0.098 3.902 4 O -0.244 6.244 5 C 0.031 3.969 6 C -0.187 4.187 7 C -0.108 4.108 8 C -0.021 4.021 9 C -0.021 4.021 10 C -0.255 4.255 11 C -0.048 4.048 12 C -0.191 4.191 13 C -0.010 4.010 14 N -0.188 5.188 15 C 0.144 3.856 16 C -0.454 4.454 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.386 5.386 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.160 4.160 25 C -0.131 4.131 26 C 0.052 3.948 27 F -0.117 7.117 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.812 2.758 -14.644 16.385 hybrid contribution -0.740 0.850 0.217 1.147 sum -7.552 3.608 -14.427 16.679 Atomic orbital electron populations 1.22824 0.80196 1.03112 1.00546 1.88054 1.21105 1.28576 1.93634 1.24189 0.99859 0.83360 0.82756 1.86233 1.57580 1.60549 1.20038 1.18866 0.93355 0.96835 0.87823 1.21030 0.97823 0.98776 1.01042 1.21175 0.98412 0.99434 0.91780 1.18861 0.95091 0.94669 0.93478 1.18386 0.94832 0.96655 0.92185 1.20113 1.02488 1.04455 0.98471 1.20370 0.96452 0.96601 0.91368 1.16983 1.05646 1.05769 0.90690 1.25797 0.91564 0.91473 0.92187 1.81021 1.14009 1.13003 1.10815 1.18341 0.87920 0.86610 0.92777 1.19806 0.97880 1.30042 0.97708 0.89535 1.26085 0.94343 0.95010 0.99174 1.69704 1.00019 1.31064 1.37837 0.86181 0.79246 0.80440 0.80555 1.18555 1.19700 1.18095 1.21445 1.02134 1.02142 0.90259 1.21282 0.94891 0.97709 0.99244 1.16891 0.93994 0.92669 0.91271 1.91465 1.65908 1.60480 1.93840 0.93099 0.93808 0.89398 0.87879 0.87914 0.84558 0.84635 0.88015 0.88097 0.89673 0.85059 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.89 101.05 1.10 1.34 16 2 O -0.39 -4.13 10.18 -59.04 -0.60 -4.74 16 3 C 0.21 1.95 6.39 101.05 0.65 2.60 16 4 O -0.33 -4.35 10.05 -43.27 -0.43 -4.78 16 5 C 0.08 1.13 6.64 -39.08 -0.26 0.87 16 6 C -0.17 -2.26 8.76 -39.50 -0.35 -2.61 16 7 C -0.09 -1.33 9.41 -39.26 -0.37 -1.69 16 8 C -0.02 -0.36 5.88 -104.89 -0.62 -0.98 16 9 C -0.02 -0.39 5.86 -105.03 -0.62 -1.00 16 10 C -0.24 -4.39 9.37 -39.18 -0.37 -4.76 16 11 C -0.03 -0.53 9.74 -39.28 -0.38 -0.92 16 12 C -0.18 -4.14 5.95 -104.12 -0.62 -4.76 16 13 C 0.30 6.94 14.28 -22.47 -0.32 6.62 16 14 N -0.51 -12.18 18.54 41.84 0.78 -11.40 16 15 C 0.15 3.51 5.73 -104.68 -0.60 2.91 16 16 C -0.43 -10.24 8.58 -37.85 -0.32 -10.56 16 17 H 0.09 2.11 7.37 -52.49 -0.39 1.73 16 18 C 0.08 1.71 5.16 -17.30 -0.09 1.62 16 19 N -0.76 -17.12 10.94 55.56 0.61 -16.52 16 20 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 C -0.14 -3.10 8.06 -38.55 -0.31 -3.42 16 25 C -0.11 -1.96 9.38 -39.20 -0.37 -2.32 16 26 C 0.07 1.19 7.30 -39.35 -0.29 0.90 16 27 F -0.14 -2.37 17.10 2.25 0.04 -2.33 16 28 H 0.05 0.48 8.03 -51.93 -0.42 0.06 16 29 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.65 8.01 -51.93 -0.42 0.24 16 32 H 0.10 0.78 6.69 -51.93 -0.35 0.43 16 33 H 0.14 1.51 5.83 -52.48 -0.31 1.20 16 34 H 0.14 1.75 6.12 -52.48 -0.32 1.43 16 35 H 0.10 1.60 6.09 -52.49 -0.32 1.28 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 38 H 0.13 2.90 4.24 -52.49 -0.22 2.68 16 39 H 0.15 2.67 6.14 -52.49 -0.32 2.35 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -26.84 346.24 -7.02 -33.86 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.46 Total: 4.83 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -4.13 Total: -16.16 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 1.38 Total: -27.92 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.04 Total: -9.52 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.84 -7.02 -33.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242113999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.219 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds