Wall clock time and date at job start Tue Mar 31 2020 15:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00224 * 2 1 4 4 O 1.42893 * 109.46926 * 75.00172 * 3 2 1 5 5 C 1.35911 * 117.00219 * 75.00287 * 4 3 2 6 6 C 1.38786 * 119.93491 * 359.97438 * 5 4 3 7 7 C 1.37914 * 120.09249 * 180.02562 * 6 5 4 8 8 C 1.39430 * 119.97434 * 0.02562 * 7 6 5 9 9 C 1.48256 * 120.06433 * 179.97438 * 8 7 6 10 10 C 1.39846 * 119.54099 * 359.97438 * 9 8 7 11 11 C 1.37692 * 121.17175 * 180.02562 * 10 9 8 12 12 C 1.39589 * 120.18951 * 359.97438 * 11 10 9 13 13 C 1.43199 * 120.45743 * 180.02562 * 12 11 10 14 14 N 9.62412 * 136.59782 * 282.02159 * 5 1 2 15 15 C 1.46550 * 119.09191 * 0.27731 * 12 11 10 16 16 C 1.40848 * 120.55272 * 179.72291 * 15 12 11 17 17 H 1.07999 * 119.99812 * 24.39535 * 16 15 12 18 18 C 1.40236 * 119.99949 * 204.39426 * 16 15 12 19 19 N 1.30658 * 119.99729 * 17.28616 * 18 16 15 20 20 Si 1.86798 * 119.99928 * 197.28824 * 18 16 15 21 21 H 1.48502 * 109.47109 * 89.99807 * 20 18 16 22 22 H 1.48499 * 109.46984 * 210.00146 * 20 18 16 23 23 H 1.48506 * 109.47090 * 330.00109 * 20 18 16 24 24 C 1.38643 * 119.54080 * 180.02562 * 9 8 7 25 25 C 1.39430 * 119.87199 * 0.25168 * 8 7 6 26 26 C 1.38069 * 119.90459 * 359.48990 * 25 8 7 27 27 F 1.35100 * 119.98468 * 180.25161 * 26 25 8 28 28 H 1.09001 * 109.47053 * 299.99831 * 1 2 3 29 29 H 1.08998 * 109.47239 * 59.99822 * 1 2 3 30 30 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46846 * 315.00029 * 3 2 1 32 32 H 1.09000 * 109.46926 * 195.00065 * 3 2 1 33 33 H 1.08003 * 119.95595 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.01432 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.41350 * 0.03952 * 10 9 8 36 36 H 1.08001 * 119.90282 * 179.97438 * 11 10 9 37 37 H 0.97003 * 119.99667 * 184.65805 * 19 18 16 38 38 H 1.07994 * 120.13004 * 359.97438 * 24 9 8 39 39 H 1.08001 * 120.04411 * 179.74879 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7189 1.4130 2.2669 6 6 3.6369 0.4168 1.9651 7 6 4.4837 -0.0622 2.9425 8 6 4.4176 0.4543 4.2359 9 6 5.3266 -0.0596 5.2883 10 6 6.2476 -1.0639 4.9738 11 6 7.1072 -1.5660 5.9250 12 6 7.0728 -1.0750 7.2312 13 6 7.9646 -1.5927 8.2249 14 7 8.6720 -2.0033 9.0132 15 6 6.1078 -0.0264 7.5732 16 6 6.0426 0.4870 8.8831 17 1 6.9061 0.4293 9.5293 18 6 4.8566 1.0732 9.3483 19 7 3.7303 0.8527 8.7237 20 14 4.8871 2.1692 10.8606 21 1 5.1277 3.5753 10.4481 22 1 3.5834 2.0762 11.5656 23 1 5.9745 1.7273 11.7704 24 6 5.2512 0.4614 6.5709 25 6 3.4909 1.4510 4.5391 26 6 2.6492 1.9306 3.5554 27 9 1.7541 2.8999 3.8461 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.4942 1.9329 -0.7266 32 1 3.0648 1.2336 -0.2660 33 1 3.6881 0.0162 0.9635 34 1 5.1979 -0.8372 2.7062 35 1 6.2854 -1.4524 3.9667 36 1 7.8100 -2.3419 5.6596 37 1 2.9226 1.3109 9.0040 38 1 4.5349 1.2365 6.7999 39 1 3.4345 1.8503 5.5411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242113999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:26 Heat of formation + Delta-G solvation = -76.132490 kcal Electronic energy + Delta-G solvation = -26145.940609 eV Core-core repulsion = 22125.511475 eV Total energy + Delta-G solvation = -4020.429134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.81783 -41.23998 -39.92949 -38.69079 -37.51793 -36.82542 -35.76551 -32.92068 -32.08614 -31.33753 -29.59308 -28.54147 -27.55762 -26.34361 -24.42764 -24.05299 -22.37038 -22.17127 -19.77395 -19.33103 -18.97915 -18.25849 -17.93102 -17.51270 -17.00924 -16.68074 -16.56370 -16.43666 -15.99304 -15.56125 -15.27178 -14.83743 -14.75343 -14.58372 -14.48514 -14.39519 -14.12097 -13.84341 -13.56252 -13.44250 -13.33526 -13.01441 -12.91094 -12.82895 -12.67092 -12.46758 -12.23856 -12.01636 -11.91665 -11.67974 -11.34466 -11.15792 -11.11923 -10.01752 -9.77490 -9.49501 -8.89658 -8.50968 -6.52529 -0.26059 0.20079 0.77185 1.02598 1.35419 1.46667 1.51300 2.05638 2.10859 2.12662 2.26018 2.66277 2.75923 2.89666 3.22496 3.61978 3.72382 3.74269 3.86571 4.02333 4.14721 4.27872 4.33936 4.40744 4.48092 4.51941 4.58896 4.73235 4.86924 4.93823 4.96639 5.00499 5.16918 5.18963 5.26831 5.39286 5.55588 5.60869 5.80303 5.88913 5.95466 6.11055 6.17170 6.32734 6.46490 6.66652 6.79076 6.98988 8.07918 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003355 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.347380 B = 8343.666071 C = 9944.608663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.200 3.800 4 O -0.340 6.340 5 C 0.090 3.910 6 C -0.158 4.158 7 C -0.074 4.074 8 C -0.048 4.048 9 C -0.011 4.011 10 C -0.223 4.223 11 C -0.025 4.025 12 C -0.208 4.208 13 C 0.305 3.695 14 N -0.532 5.532 15 C 0.129 3.871 16 C -0.466 4.466 17 H 0.068 0.932 18 C 0.048 3.952 19 N -0.787 5.787 20 Si 0.972 3.028 21 H -0.253 1.253 22 H -0.261 1.261 23 H -0.269 1.269 24 C -0.169 4.169 25 C -0.119 4.119 26 C 0.046 3.954 27 F -0.148 7.148 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.299 0.701 38 H 0.121 0.879 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 2.870 -19.468 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.088 3.912 4 O -0.257 6.257 5 C 0.045 3.955 6 C -0.176 4.176 7 C -0.091 4.091 8 C -0.049 4.049 9 C -0.012 4.012 10 C -0.242 4.242 11 C -0.045 4.045 12 C -0.214 4.214 13 C -0.004 4.004 14 N -0.212 5.212 15 C 0.124 3.876 16 C -0.493 4.493 17 H 0.086 0.914 18 C -0.173 4.173 19 N -0.410 5.410 20 Si 0.792 3.208 21 H -0.177 1.177 22 H -0.185 1.185 23 H -0.193 1.193 24 C -0.188 4.188 25 C -0.138 4.138 26 C 0.027 3.973 27 F -0.127 7.127 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.188 0.812 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.315 2.232 -18.201 19.743 hybrid contribution -0.688 0.982 1.005 1.564 sum -8.003 3.214 -17.197 19.238 Atomic orbital electron populations 1.22961 0.79365 1.03936 1.00900 1.88024 1.22141 1.29197 1.93496 1.24750 1.01724 0.83606 0.81140 1.86261 1.57103 1.60998 1.21310 1.18987 0.93046 0.96035 0.87478 1.21335 0.96415 0.97691 1.02193 1.21444 0.98344 0.98971 0.90386 1.18796 0.95703 0.96031 0.94324 1.18689 0.94689 0.95949 0.91864 1.20578 1.00682 1.02927 1.00051 1.20728 0.96893 0.96757 0.90158 1.17258 1.05836 1.06414 0.91921 1.26048 0.91305 0.90983 0.92029 1.80995 1.14989 1.14032 1.11212 1.18622 0.88759 0.87092 0.93122 1.19844 0.98247 1.32977 0.98277 0.91396 1.26670 0.93614 0.95638 1.01354 1.69715 1.00447 1.31769 1.39096 0.85328 0.79070 0.79069 0.77316 1.17660 1.18511 1.19300 1.21404 1.02865 1.03169 0.91338 1.21176 0.95592 0.98173 0.98830 1.17037 0.94492 0.93452 0.92343 1.91431 1.66243 1.60947 1.94040 0.94755 0.91432 0.88495 0.84781 0.85766 0.81229 0.81913 0.83860 0.85127 0.88921 0.86105 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.89 113.37 1.23 1.57 16 2 O -0.41 -7.04 10.18 -126.21 -1.28 -8.33 16 3 C 0.20 2.87 6.39 113.37 0.72 3.59 16 4 O -0.34 -8.10 10.05 -69.77 -0.70 -8.80 16 5 C 0.09 2.46 6.64 22.59 0.15 2.61 16 6 C -0.16 -3.62 8.76 22.32 0.20 -3.42 16 7 C -0.07 -1.89 9.41 22.48 0.21 -1.68 16 8 C -0.05 -1.61 5.88 -20.04 -0.12 -1.73 16 9 C -0.01 -0.42 5.86 -20.13 -0.12 -0.54 16 10 C -0.22 -7.70 9.37 22.53 0.21 -7.49 16 11 C -0.02 -0.93 9.74 22.47 0.22 -0.71 16 12 C -0.21 -9.45 5.95 -19.54 -0.12 -9.57 16 13 C 0.30 14.45 14.28 88.33 1.26 15.71 16 14 N -0.53 -25.99 18.54 19.00 0.35 -25.64 16 15 C 0.13 6.34 5.73 -19.90 -0.11 6.23 16 16 C -0.47 -23.62 8.58 23.39 0.20 -23.42 16 17 H 0.07 3.56 7.37 -2.91 -0.02 3.54 16 18 C 0.05 2.22 5.16 85.35 0.44 2.66 16 19 N -0.79 -36.88 10.94 21.87 0.24 -36.64 16 20 Si 0.97 36.27 29.60 68.60 2.03 38.30 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 22 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 23 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 24 C -0.17 -7.69 8.06 22.94 0.18 -7.51 16 25 C -0.12 -4.19 9.38 22.52 0.21 -3.98 16 26 C 0.05 1.53 7.30 22.42 0.16 1.69 16 27 F -0.15 -5.14 17.10 44.97 0.77 -4.37 16 28 H 0.03 0.58 8.03 -2.39 -0.02 0.56 16 29 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.13 1.10 8.01 -2.39 -0.02 1.08 16 32 H 0.12 1.25 6.69 -2.39 -0.02 1.23 16 33 H 0.17 2.78 5.83 -2.91 -0.02 2.76 16 34 H 0.16 3.25 6.12 -2.91 -0.02 3.23 16 35 H 0.14 3.72 6.09 -2.91 -0.02 3.70 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.30 12.59 8.30 -92.71 -0.77 11.82 16 38 H 0.12 5.68 4.24 -2.91 -0.01 5.67 16 39 H 0.13 5.01 6.14 -2.91 -0.02 4.99 16 Total: -1.00 -61.05 346.24 7.48 -53.57 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.13 Total: 17.89 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 4.94 Total: -25.99 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.59 Total: -62.28 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.99 Total: -17.12 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.77 Total: -4.37 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -61.05 7.48 -53.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242113999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.560 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds