Wall clock time and date at job start Tue Mar 31 2020 15:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99941 * 2 1 4 4 O 1.42901 * 109.47536 * 74.99776 * 3 2 1 5 5 C 1.35813 * 116.99809 * 74.99962 * 4 3 2 6 6 C 1.38583 * 120.11461 * 0.02562 * 5 4 3 7 7 C 1.38192 * 120.12467 * 179.72498 * 6 5 4 8 8 C 1.38357 * 120.34699 * 359.97438 * 7 6 5 9 9 C 1.38231 * 120.21519 * 0.02562 * 8 7 6 10 10 F 1.35105 * 120.06027 * 179.97438 * 9 8 7 11 11 C 1.39578 * 119.87629 * 359.97438 * 9 8 7 12 12 C 1.48201 * 120.17128 * 180.02562 * 11 9 8 13 13 C 1.39860 * 119.53934 * 114.68523 * 12 11 9 14 14 C 1.37686 * 121.16317 * 179.75213 * 13 12 11 15 15 C 1.39606 * 120.19067 * 0.52316 * 14 13 12 16 16 C 1.43197 * 120.45113 * 179.71739 * 15 14 13 17 17 N 9.13964 * 69.28099 * 35.75896 * 2 1 3 18 18 C 1.46548 * 119.09598 * 359.73972 * 15 14 13 19 19 C 1.40853 * 120.55324 * 180.02562 * 18 15 14 20 20 H 1.07999 * 119.99340 * 335.90401 * 19 18 15 21 21 C 1.40217 * 120.00342 * 155.90536 * 19 18 15 22 22 N 1.30662 * 120.00046 * 341.77088 * 21 19 18 23 23 Si 1.86801 * 120.00156 * 161.76469 * 21 19 18 24 24 H 1.48506 * 109.46791 * 90.00092 * 23 21 19 25 25 H 1.48499 * 109.47232 * 210.00108 * 23 21 19 26 26 H 1.48506 * 109.47287 * 330.00459 * 23 21 19 27 27 C 1.38670 * 119.53864 * 294.95925 * 12 11 9 28 28 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47232 * 300.00348 * 1 2 3 30 30 H 1.08995 * 109.46831 * 60.00135 * 1 2 3 31 31 H 1.09003 * 109.46818 * 314.99785 * 3 2 1 32 32 H 1.09004 * 109.46991 * 194.99970 * 3 2 1 33 33 H 1.08003 * 119.93837 * 359.74949 * 6 5 4 34 34 H 1.08006 * 119.83022 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.89344 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.42279 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.90573 * 180.28217 * 14 13 12 38 38 H 0.97006 * 120.00217 * 185.04120 * 22 21 19 39 39 H 1.08004 * 120.13815 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8855 1.8825 1.3013 5 6 2.7183 1.4135 2.2662 6 6 3.6370 0.4196 1.9688 7 6 4.4883 -0.0538 2.9490 8 6 4.4310 0.4599 4.2324 9 6 3.5201 1.4516 4.5447 10 9 3.4664 1.9506 5.7991 11 6 2.6559 1.9365 3.5617 12 6 1.6771 3.0000 3.8892 13 6 1.7973 4.2568 3.2875 14 6 0.9038 5.2674 3.5636 15 6 -0.1401 5.0544 4.4657 16 6 -1.0689 6.1034 4.7615 17 7 -1.8044 6.9370 4.9956 18 6 -0.2721 3.7429 5.1061 19 6 -1.3141 3.4944 6.0207 20 1 -1.7737 4.3149 6.5516 21 6 -1.7548 2.1817 6.2417 22 7 -1.4741 1.2439 5.3762 23 14 -2.7431 1.7736 7.7734 24 1 -4.1904 1.9473 7.4895 25 1 -2.4819 0.3668 8.1708 26 1 -2.3427 2.6824 8.8776 27 6 0.6582 2.7369 4.7923 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2660 33 1 3.6880 0.0144 0.9690 34 1 5.2023 -0.8289 2.7121 35 1 5.1001 0.0849 4.9927 36 1 2.6026 4.4365 2.5906 37 1 1.0132 6.2288 3.0838 38 1 -1.8399 0.3528 5.4909 39 1 0.5801 1.7633 5.2532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244483461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:17 Heat of formation + Delta-G solvation = -61.774854 kcal Electronic energy + Delta-G solvation = -27207.448638 eV Core-core repulsion = 23187.642098 eV Total energy + Delta-G solvation = -4019.806540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.42155 -40.14781 -38.12221 -37.34596 -36.16231 -35.08500 -34.10478 -31.87702 -29.91592 -29.60534 -28.49723 -27.56396 -25.72700 -25.23082 -23.39878 -21.93090 -21.07930 -20.85453 -18.44376 -17.68173 -17.17066 -16.88445 -16.78614 -16.06695 -15.99114 -15.30127 -15.19716 -15.08269 -14.57975 -14.11406 -13.95411 -13.74762 -13.45463 -13.22476 -12.86354 -12.64620 -12.52585 -12.37472 -12.04487 -11.76740 -11.71780 -11.53784 -11.46582 -11.29087 -11.17296 -11.07566 -10.91338 -10.72163 -10.51475 -10.17454 -9.89480 -9.79008 -9.47072 -8.46587 -8.11326 -7.70132 -7.36705 -7.08250 -4.66037 1.34380 1.50458 2.17004 2.70914 2.94410 2.99146 3.10683 3.27070 3.62766 3.72259 3.86875 3.96440 4.15465 4.49467 4.63188 4.87323 4.97552 5.05152 5.19010 5.23837 5.34719 5.44709 5.50788 5.53098 5.54838 5.62574 5.83480 6.05832 6.13895 6.32168 6.39496 6.45555 6.50074 6.74758 6.78296 6.90701 6.97046 7.04618 7.21703 7.50496 7.58472 7.73529 7.81198 7.91763 8.25062 8.48326 8.59775 8.87517 9.80066 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.004679 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.925933 B = 5983.069773 C = 6216.136207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.209 3.791 4 O -0.305 6.305 5 C 0.168 3.832 6 C -0.212 4.212 7 C -0.066 4.066 8 C -0.194 4.194 9 C 0.141 3.859 10 F -0.127 7.127 11 C -0.086 4.086 12 C -0.011 4.011 13 C -0.219 4.219 14 C -0.031 4.031 15 C -0.187 4.187 16 C 0.302 3.698 17 N -0.514 5.514 18 C 0.150 3.850 19 C -0.430 4.430 20 H 0.086 0.914 21 C 0.077 3.923 22 N -0.763 5.763 23 Si 0.913 3.087 24 H -0.265 1.265 25 H -0.271 1.271 26 H -0.255 1.255 27 C -0.134 4.134 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.289 0.711 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 -8.341 -8.569 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.096 3.904 4 O -0.220 6.220 5 C 0.122 3.878 6 C -0.231 4.231 7 C -0.084 4.084 8 C -0.213 4.213 9 C 0.122 3.878 10 F -0.105 7.105 11 C -0.088 4.088 12 C -0.012 4.012 13 C -0.239 4.239 14 C -0.051 4.051 15 C -0.194 4.194 16 C -0.008 4.008 17 N -0.193 5.193 18 C 0.144 3.856 19 C -0.458 4.458 20 H 0.104 0.896 21 C -0.146 4.146 22 N -0.385 5.385 23 Si 0.736 3.264 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.178 1.178 27 C -0.153 4.153 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.357 -7.321 -8.183 13.798 hybrid contribution -0.308 -0.571 0.503 0.821 sum 8.048 -7.892 -7.679 13.639 Atomic orbital electron populations 1.22852 0.79789 1.02961 1.01179 1.87996 1.21453 1.28557 1.93732 1.24210 0.99421 0.83504 0.83268 1.86394 1.56756 1.59421 1.19426 1.18590 0.89022 0.92276 0.87911 1.21194 0.99632 1.01027 1.01236 1.20643 0.97754 0.98348 0.91678 1.20909 1.01965 0.99965 0.98452 1.17411 0.96267 0.94599 0.79546 1.91527 1.95446 1.86250 1.37266 1.18374 0.99364 1.00645 0.90385 1.18119 0.93914 0.91345 0.97841 1.19968 1.03120 0.93201 1.07574 1.20320 0.92901 0.97063 0.94859 1.16954 1.00152 0.92572 1.09674 1.25818 0.91927 0.91702 0.91313 1.81010 1.12609 1.12901 1.12788 1.18299 0.90688 0.88259 0.88327 1.19743 1.14334 0.93139 1.18579 0.89559 1.26101 0.95631 0.95522 0.97361 1.69703 1.33001 1.04048 1.31770 0.86194 0.79942 0.78858 0.81431 1.18992 1.19529 1.17842 1.21296 0.93829 1.00129 1.00063 0.89654 0.92211 0.93890 0.87830 0.88314 0.84852 0.85307 0.85041 0.88685 0.88317 0.89914 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.89 101.05 1.10 1.43 16 2 O -0.40 -5.08 10.18 -59.04 -0.60 -5.68 16 3 C 0.21 2.42 6.39 101.05 0.65 3.07 16 4 O -0.31 -4.94 9.39 -42.97 -0.40 -5.34 16 5 C 0.17 2.79 6.60 -38.85 -0.26 2.53 16 6 C -0.21 -2.87 8.78 -39.47 -0.35 -3.22 16 7 C -0.07 -0.82 10.03 -39.55 -0.40 -1.21 16 8 C -0.19 -2.72 10.01 -39.54 -0.40 -3.12 16 9 C 0.14 2.50 7.23 -39.08 -0.28 2.22 16 10 F -0.13 -2.43 16.65 2.25 0.04 -2.39 16 11 C -0.09 -1.64 5.29 -104.70 -0.55 -2.19 16 12 C -0.01 -0.24 4.63 -105.04 -0.49 -0.73 16 13 C -0.22 -4.54 9.35 -39.18 -0.37 -4.90 16 14 C -0.03 -0.65 9.74 -39.27 -0.38 -1.03 16 15 C -0.19 -4.45 5.95 -104.11 -0.62 -5.07 16 16 C 0.30 7.29 14.28 -22.47 -0.32 6.97 16 17 N -0.51 -12.67 18.54 41.84 0.78 -11.90 16 18 C 0.15 3.76 5.74 -104.68 -0.60 3.16 16 19 C -0.43 -10.85 8.58 -37.85 -0.32 -11.18 16 20 H 0.09 2.20 7.37 -52.49 -0.39 1.81 16 21 C 0.08 1.80 5.14 -17.31 -0.09 1.71 16 22 N -0.76 -18.02 10.96 55.56 0.61 -17.41 16 23 Si 0.91 17.77 29.60 -169.99 -5.03 12.74 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.25 -5.02 7.11 56.52 0.40 -4.61 16 27 C -0.13 -3.23 8.15 -38.54 -0.31 -3.54 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 30 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.10 0.96 8.01 -51.93 -0.42 0.55 16 32 H 0.10 0.90 6.70 -51.93 -0.35 0.55 16 33 H 0.13 1.52 5.85 -52.48 -0.31 1.21 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 39 H 0.13 3.17 6.17 -52.48 -0.32 2.85 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -28.37 352.33 -7.16 -35.53 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.87 Total: 4.26 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -3.99 Total: -15.12 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 1.38 Total: -29.31 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.00 Total: -11.02 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.37 -7.16 -35.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244483461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.244 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds