Wall clock time and date at job start Tue Mar 31 2020 15:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99941 * 2 1 4 4 O 1.42901 * 109.47536 * 74.99776 * 3 2 1 5 5 C 1.35813 * 116.99809 * 74.99962 * 4 3 2 6 6 C 1.38583 * 120.11461 * 0.02562 * 5 4 3 7 7 C 1.38192 * 120.12467 * 179.72498 * 6 5 4 8 8 C 1.38357 * 120.34699 * 359.97438 * 7 6 5 9 9 C 1.38231 * 120.21519 * 0.02562 * 8 7 6 10 10 F 1.35105 * 120.06027 * 179.97438 * 9 8 7 11 11 C 1.39578 * 119.87629 * 359.97438 * 9 8 7 12 12 C 1.48201 * 120.17128 * 180.02562 * 11 9 8 13 13 C 1.39860 * 119.53934 * 114.68523 * 12 11 9 14 14 C 1.37686 * 121.16317 * 179.75213 * 13 12 11 15 15 C 1.39606 * 120.19067 * 0.52316 * 14 13 12 16 16 C 1.43197 * 120.45113 * 179.71739 * 15 14 13 17 17 N 9.13964 * 69.28099 * 35.75896 * 2 1 3 18 18 C 1.46548 * 119.09598 * 359.73972 * 15 14 13 19 19 C 1.40853 * 120.55324 * 180.02562 * 18 15 14 20 20 H 1.07999 * 119.99340 * 335.90401 * 19 18 15 21 21 C 1.40217 * 120.00342 * 155.90536 * 19 18 15 22 22 N 1.30662 * 120.00046 * 341.77088 * 21 19 18 23 23 Si 1.86801 * 120.00156 * 161.76469 * 21 19 18 24 24 H 1.48506 * 109.46791 * 90.00092 * 23 21 19 25 25 H 1.48499 * 109.47232 * 210.00108 * 23 21 19 26 26 H 1.48506 * 109.47287 * 330.00459 * 23 21 19 27 27 C 1.38670 * 119.53864 * 294.95925 * 12 11 9 28 28 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47232 * 300.00348 * 1 2 3 30 30 H 1.08995 * 109.46831 * 60.00135 * 1 2 3 31 31 H 1.09003 * 109.46818 * 314.99785 * 3 2 1 32 32 H 1.09004 * 109.46991 * 194.99970 * 3 2 1 33 33 H 1.08003 * 119.93837 * 359.74949 * 6 5 4 34 34 H 1.08006 * 119.83022 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.89344 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.42279 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.90573 * 180.28217 * 14 13 12 38 38 H 0.97006 * 120.00217 * 185.04120 * 22 21 19 39 39 H 1.08004 * 120.13815 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8855 1.8825 1.3013 5 6 2.7183 1.4135 2.2662 6 6 3.6370 0.4196 1.9688 7 6 4.4883 -0.0538 2.9490 8 6 4.4310 0.4599 4.2324 9 6 3.5201 1.4516 4.5447 10 9 3.4664 1.9506 5.7991 11 6 2.6559 1.9365 3.5617 12 6 1.6771 3.0000 3.8892 13 6 1.7973 4.2568 3.2875 14 6 0.9038 5.2674 3.5636 15 6 -0.1401 5.0544 4.4657 16 6 -1.0689 6.1034 4.7615 17 7 -1.8044 6.9370 4.9956 18 6 -0.2721 3.7429 5.1061 19 6 -1.3141 3.4944 6.0207 20 1 -1.7737 4.3149 6.5516 21 6 -1.7548 2.1817 6.2417 22 7 -1.4741 1.2439 5.3762 23 14 -2.7431 1.7736 7.7734 24 1 -4.1904 1.9473 7.4895 25 1 -2.4819 0.3668 8.1708 26 1 -2.3427 2.6824 8.8776 27 6 0.6582 2.7369 4.7923 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2660 33 1 3.6880 0.0144 0.9690 34 1 5.2023 -0.8289 2.7121 35 1 5.1001 0.0849 4.9927 36 1 2.6026 4.4365 2.5906 37 1 1.0132 6.2288 3.0838 38 1 -1.8399 0.3528 5.4909 39 1 0.5801 1.7633 5.2532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244483461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:15 Heat of formation + Delta-G solvation = -75.461462 kcal Electronic energy + Delta-G solvation = -27208.042134 eV Core-core repulsion = 23187.642098 eV Total energy + Delta-G solvation = -4020.400036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.80270 -41.27992 -39.53024 -38.72990 -37.22841 -36.97475 -35.85922 -33.36941 -31.69529 -30.74956 -29.95558 -28.53801 -27.53700 -26.19809 -24.84799 -23.19945 -22.69649 -22.34940 -19.66145 -19.40384 -18.84275 -18.00282 -17.87045 -17.45614 -17.20953 -16.71191 -16.53978 -16.34709 -15.67629 -15.63400 -15.46881 -15.04827 -14.80567 -14.63882 -14.51052 -14.49225 -13.94605 -13.67973 -13.49711 -13.42676 -13.17370 -13.04373 -12.85379 -12.77818 -12.73137 -12.32770 -12.17369 -12.13977 -11.97859 -11.55488 -11.48365 -11.21435 -11.11532 -9.81690 -9.50562 -9.32556 -8.99272 -8.83236 -6.53912 0.04082 0.32628 0.51866 1.00646 1.32122 1.43692 1.49766 2.02373 2.09992 2.22594 2.31526 2.62425 2.64880 2.87166 3.47642 3.56651 3.63477 3.79803 4.02876 4.09244 4.18610 4.25983 4.38390 4.40138 4.46117 4.52370 4.59409 4.74405 4.88440 4.94190 5.02028 5.10000 5.20630 5.22956 5.27413 5.40687 5.47301 5.72217 5.80036 5.91672 5.92119 6.05769 6.12102 6.41002 6.50159 6.64209 6.77677 6.95895 8.07109 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.004679 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.925933 B = 5983.069773 C = 6216.136207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.199 3.801 4 O -0.333 6.333 5 C 0.160 3.840 6 C -0.204 4.204 7 C -0.047 4.047 8 C -0.189 4.189 9 C 0.115 3.885 10 F -0.146 7.146 11 C -0.130 4.130 12 C 0.001 3.999 13 C -0.215 4.215 14 C -0.026 4.026 15 C -0.210 4.210 16 C 0.307 3.693 17 N -0.530 5.530 18 C 0.128 3.872 19 C -0.466 4.466 20 H 0.071 0.929 21 C 0.044 3.956 22 N -0.785 5.785 23 Si 0.976 3.024 24 H -0.260 1.260 25 H -0.254 1.254 26 H -0.261 1.261 27 C -0.159 4.159 28 H 0.098 0.902 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.299 0.701 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 -10.228 -10.351 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C 0.087 3.913 4 O -0.248 6.248 5 C 0.115 3.885 6 C -0.222 4.222 7 C -0.065 4.065 8 C -0.207 4.207 9 C 0.096 3.904 10 F -0.125 7.125 11 C -0.131 4.131 12 C 0.000 4.000 13 C -0.234 4.234 14 C -0.047 4.047 15 C -0.216 4.216 16 C -0.002 4.002 17 N -0.210 5.210 18 C 0.123 3.877 19 C -0.494 4.494 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.408 5.408 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.178 1.178 26 H -0.185 1.185 27 C -0.179 4.179 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.383 -9.209 -9.990 17.100 hybrid contribution -0.784 -0.046 0.878 1.178 sum 9.599 -9.255 -9.112 16.150 Atomic orbital electron populations 1.22878 0.79674 1.03704 1.00490 1.87969 1.21666 1.29316 1.93581 1.24720 1.01491 0.83422 0.81670 1.86363 1.57146 1.60382 1.20957 1.18728 0.89738 0.92912 0.87165 1.21544 0.98334 0.99527 1.02843 1.21211 0.97176 0.97854 0.90235 1.21265 1.01000 0.98402 1.00071 1.17821 0.97783 0.96130 0.78685 1.91471 1.95725 1.86802 1.38508 1.18427 1.00461 1.01875 0.92381 1.18440 0.93225 0.92625 0.95755 1.20314 1.03258 0.92632 1.07246 1.20644 0.91791 0.98448 0.93774 1.17162 1.01292 0.92189 1.10970 1.25950 0.91748 0.91542 0.90913 1.80982 1.13013 1.13520 1.13446 1.18606 0.91081 0.89231 0.88750 1.19833 1.15583 0.93914 1.20031 0.91055 1.26796 0.96399 0.94761 0.99735 1.69729 1.33555 1.04582 1.32943 0.85280 0.78537 0.79133 0.77523 1.18432 1.17758 1.18480 1.21142 0.95239 0.99344 1.02130 0.88319 0.95780 0.91635 0.85747 0.85288 0.82107 0.80632 0.82419 0.86183 0.85453 0.88986 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.89 113.37 1.23 1.87 16 2 O -0.41 -9.39 10.18 -126.21 -1.29 -10.67 16 3 C 0.20 4.08 6.39 113.37 0.72 4.80 16 4 O -0.33 -10.38 9.39 -68.69 -0.64 -11.02 16 5 C 0.16 5.09 6.60 22.74 0.15 5.24 16 6 C -0.20 -4.78 8.78 22.34 0.20 -4.58 16 7 C -0.05 -0.95 10.03 22.29 0.22 -0.73 16 8 C -0.19 -4.79 10.01 22.30 0.22 -4.57 16 9 C 0.12 4.05 7.23 22.59 0.16 4.21 16 10 F -0.15 -5.80 16.65 44.97 0.75 -5.05 16 11 C -0.13 -4.96 5.29 -19.92 -0.11 -5.06 16 12 C 0.00 0.03 4.63 -20.13 -0.09 -0.06 16 13 C -0.22 -8.91 9.35 22.53 0.21 -8.70 16 14 C -0.03 -1.11 9.74 22.47 0.22 -0.89 16 15 C -0.21 -10.33 5.95 -19.54 -0.12 -10.45 16 16 C 0.31 15.30 14.28 88.33 1.26 16.56 16 17 N -0.53 -26.75 18.54 19.00 0.35 -26.39 16 18 C 0.13 6.81 5.74 -19.90 -0.11 6.69 16 19 C -0.47 -24.87 8.58 23.39 0.20 -24.67 16 20 H 0.07 3.88 7.37 -2.91 -0.02 3.86 16 21 C 0.04 2.13 5.14 85.35 0.44 2.57 16 22 N -0.79 -38.64 10.96 21.87 0.24 -38.40 16 23 Si 0.98 37.39 29.60 68.60 2.03 39.42 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 C -0.16 -8.08 8.15 22.94 0.19 -7.89 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.02 0.70 8.03 -2.39 -0.02 0.68 16 30 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.13 1.97 8.01 -2.39 -0.02 1.95 16 32 H 0.13 1.81 6.70 -2.38 -0.02 1.79 16 33 H 0.16 2.86 5.85 -2.91 -0.02 2.84 16 34 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.30 13.08 8.30 -92.70 -0.77 12.32 16 39 H 0.11 5.75 6.17 -2.91 -0.02 5.74 16 Total: -1.00 -65.91 352.33 7.55 -58.36 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.11 Total: 19.42 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.00 Total: -25.65 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.59 Total: -64.80 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.93 Total: -21.70 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.75 Total: -5.05 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -65.91 7.55 -58.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244483461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.104 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds