Wall clock time and date at job start Tue Mar 31 2020 15:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36056 * 117.00183 * 2 1 4 4 C 1.38837 * 120.00423 * 90.00169 * 3 2 1 5 5 F 1.35095 * 119.86848 * 0.02562 * 4 3 2 6 6 C 1.38674 * 120.26690 * 180.02562 * 4 3 2 7 7 C 1.37859 * 120.28552 * 359.97438 * 6 4 3 8 8 C 1.39674 * 120.01338 * 359.97419 * 7 6 4 9 9 C 1.47854 * 120.13315 * 179.97438 * 8 7 6 10 10 C 1.40062 * 119.50017 * 56.16449 * 9 8 7 11 11 C 1.35956 * 121.18069 * 180.02562 * 10 9 8 12 12 C 1.41075 * 120.12007 * 359.97397 * 11 10 9 13 13 C 1.40391 * 120.48635 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00136 * 205.15590 * 13 12 11 15 15 C 1.40267 * 119.99775 * 25.14690 * 13 12 11 16 16 N 1.30656 * 120.00027 * 202.63436 * 15 13 12 17 17 Si 1.86800 * 120.00073 * 22.63794 * 15 13 12 18 18 H 1.48505 * 109.46883 * 269.99510 * 17 15 13 19 19 H 1.48494 * 109.47229 * 29.99569 * 17 15 13 20 20 H 1.48498 * 109.47418 * 149.99777 * 17 15 13 21 21 C 1.46661 * 119.03131 * 0.29751 * 12 11 10 22 22 C 1.43203 * 120.56165 * 179.72306 * 21 12 11 23 23 N 8.16383 * 85.69707 * 308.83540 * 2 1 3 24 24 C 1.39045 * 118.87704 * 359.42740 * 21 12 11 25 25 C 1.38844 * 120.01707 * 270.21794 * 3 2 1 26 26 O 1.35883 * 120.13755 * 359.97438 * 25 3 2 27 27 C 1.42908 * 116.99744 * 275.08641 * 26 25 3 28 28 H 1.08993 * 109.47356 * 299.99666 * 1 2 3 29 29 H 1.09003 * 109.47365 * 59.99399 * 1 2 3 30 30 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.86160 * 179.97438 * 6 4 3 32 32 H 1.07996 * 119.99494 * 180.02562 * 7 6 4 33 33 H 1.07999 * 119.41187 * 359.97204 * 10 9 8 34 34 H 1.08002 * 119.94335 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99835 * 354.96094 * 16 15 13 36 36 H 1.08007 * 120.10051 * 180.26473 * 24 21 12 37 37 H 1.09000 * 109.46603 * 184.98394 * 27 26 25 38 38 H 1.08996 * 109.47009 * 304.98763 * 27 26 25 39 39 H 1.08997 * 109.46731 * 64.98495 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3619 1.8308 1.2023 5 9 2.0546 1.2264 2.3708 6 6 2.9911 3.0666 1.2087 7 6 3.3092 3.6910 0.0214 8 6 2.9984 3.0788 -1.1950 9 6 3.3378 3.7463 -2.4699 10 6 4.6640 4.1208 -2.7206 11 6 5.0141 4.7368 -3.8809 12 6 4.0362 5.0103 -4.8603 13 6 4.3892 5.6456 -6.0614 14 1 3.6503 6.2091 -6.6118 15 6 5.7017 5.5487 -6.5465 16 7 6.1606 6.4497 -7.3740 17 14 6.7937 4.1313 -6.0096 18 1 7.5395 4.5175 -4.7849 19 1 5.9540 2.9406 -5.7230 20 1 7.7557 3.8092 -7.0940 21 6 2.6442 4.6268 -4.6027 22 6 1.6241 4.8940 -5.5716 23 7 0.8164 5.1050 -6.3413 24 6 2.3329 3.9936 -3.4046 25 6 2.3580 1.8332 -1.2022 26 8 2.0474 1.2325 -2.3808 27 6 2.9852 0.2829 -2.8919 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.2329 3.5421 2.1477 32 1 3.7994 4.6531 0.0319 33 1 5.4219 3.9174 -1.9786 34 1 6.0428 5.0166 -4.0536 35 1 5.5723 7.1439 -7.7100 36 1 1.3149 3.6986 -3.1964 37 1 2.6606 -0.0546 -3.8761 38 1 3.9669 0.7494 -2.9731 39 1 3.0432 -0.5703 -2.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245044888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:25 Heat of formation + Delta-G solvation = -53.419662 kcal Electronic energy + Delta-G solvation = -26986.115473 eV Core-core repulsion = 22966.671241 eV Total energy + Delta-G solvation = -4019.444232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.83973 -40.25685 -38.28026 -37.48901 -36.78427 -35.28275 -34.33212 -31.70000 -30.41185 -29.98447 -29.03232 -27.14274 -26.47454 -25.30893 -22.84280 -22.30187 -22.01008 -21.02576 -18.61079 -18.38771 -17.81127 -17.25117 -16.72201 -16.14539 -15.70087 -15.22639 -15.15375 -14.93609 -14.69537 -14.51685 -14.35799 -14.32064 -14.19291 -13.22832 -13.13955 -12.86935 -12.71418 -12.38225 -12.30819 -12.08708 -11.92618 -11.74380 -11.64637 -11.44762 -11.20451 -11.03492 -10.85780 -10.50150 -10.40686 -10.24813 -9.78555 -9.54298 -9.40069 -8.66627 -8.58223 -8.06294 -7.98421 -7.61042 -5.01010 0.99262 1.03050 1.92407 2.35500 2.93221 3.09339 3.22456 3.30352 3.61837 3.65809 3.74905 3.89014 4.02701 4.30108 4.38868 4.88774 4.96799 5.09526 5.17009 5.22303 5.28160 5.31737 5.39711 5.53296 5.55221 5.59541 5.74304 5.76625 5.87292 5.90892 6.09414 6.18814 6.36473 6.48240 6.49657 6.58350 6.90460 6.98946 7.13729 7.23814 7.25996 7.44326 7.51421 7.72671 7.89548 8.01596 8.23741 8.64148 9.44217 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003774 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.737802 B = 7417.013485 C = 7883.440225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.326 6.326 3 C 0.041 3.959 4 C 0.068 3.932 5 F -0.138 7.138 6 C -0.144 4.144 7 C -0.087 4.087 8 C -0.003 4.003 9 C -0.219 4.219 10 C -0.021 4.021 11 C -0.248 4.248 12 C 0.134 3.866 13 C -0.462 4.462 14 H 0.086 0.914 15 C 0.041 3.959 16 N -0.768 5.768 17 Si 1.074 2.926 18 H -0.267 1.267 19 H -0.255 1.255 20 H -0.284 1.284 21 C -0.182 4.182 22 C 0.297 3.703 23 N -0.501 5.501 24 C 0.032 3.968 25 C 0.100 3.900 26 O -0.320 6.320 27 C 0.042 3.958 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -8.598 13.386 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.243 6.243 3 C -0.004 4.004 4 C 0.048 3.952 5 F -0.116 7.116 6 C -0.163 4.163 7 C -0.105 4.105 8 C -0.004 4.004 9 C -0.220 4.220 10 C -0.040 4.040 11 C -0.267 4.267 12 C 0.128 3.872 13 C -0.488 4.488 14 H 0.104 0.896 15 C -0.185 4.185 16 N -0.387 5.387 17 Si 0.897 3.103 18 H -0.194 1.194 19 H -0.179 1.179 20 H -0.210 1.210 21 C -0.188 4.188 22 C -0.013 4.013 23 N -0.179 5.179 24 C 0.011 3.989 25 C 0.055 3.945 26 O -0.236 6.236 27 C -0.052 4.052 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.922 -8.944 11.864 14.886 hybrid contribution -1.355 0.777 0.658 1.695 sum -2.277 -8.167 12.522 15.122 Atomic orbital electron populations 1.23010 0.78717 1.03122 1.00872 1.86026 1.20167 1.23834 1.94262 1.18986 1.02320 0.88079 0.91008 1.17916 1.03778 0.93069 0.80445 1.91459 1.91375 1.83137 1.45664 1.21011 1.01492 0.93763 1.00029 1.21200 0.99376 0.99906 0.90004 1.19207 0.94571 0.92521 0.94104 1.17430 0.93852 1.15571 0.95160 1.20356 0.94001 0.93752 0.95912 1.20727 0.99133 1.10921 0.95882 1.18506 0.89104 0.87243 0.92339 1.20953 0.98062 1.24611 1.05199 0.89644 1.27762 0.97136 0.99977 0.93643 1.70456 1.38643 1.08191 1.21365 0.83612 0.75628 0.74860 0.76162 1.19362 1.17943 1.21047 1.16685 0.90277 1.17201 0.94632 1.25671 0.91864 0.91517 0.92226 1.81020 1.12203 1.13460 1.11233 1.20592 0.97113 0.91008 0.90150 1.18942 0.99364 0.91655 0.84529 1.85963 1.45691 1.57650 1.34301 1.22955 0.92891 0.90485 0.98860 0.93812 0.92862 0.88876 0.84431 0.84087 0.88042 0.86636 0.89194 0.87692 0.89012 0.93001 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.13 101.05 1.13 1.54 16 2 O -0.33 -4.72 10.05 -34.59 -0.35 -5.07 16 3 C 0.04 0.61 5.74 -39.14 -0.22 0.39 16 4 C 0.07 0.94 7.31 -39.20 -0.29 0.65 16 5 F -0.14 -1.92 17.10 2.25 0.04 -1.89 16 6 C -0.14 -1.73 10.00 -39.56 -0.40 -2.12 16 7 C -0.09 -1.12 9.60 -39.18 -0.38 -1.49 16 8 C 0.00 -0.05 5.38 -104.74 -0.56 -0.61 16 9 C -0.22 -3.83 5.16 -104.82 -0.54 -4.37 16 10 C -0.02 -0.37 9.44 -39.72 -0.38 -0.75 16 11 C -0.25 -4.92 7.35 -39.33 -0.29 -5.21 16 12 C 0.13 2.97 5.35 -104.61 -0.56 2.41 16 13 C -0.46 -10.99 8.92 -38.01 -0.34 -11.32 16 14 H 0.09 2.19 7.52 -52.49 -0.39 1.80 16 15 C 0.04 0.92 5.37 -17.29 -0.09 0.83 16 16 N -0.77 -18.05 13.64 55.56 0.76 -17.29 16 17 Si 1.07 20.58 25.05 -169.99 -4.26 16.32 16 18 H -0.27 -4.70 6.35 56.52 0.36 -4.34 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.18 -3.92 5.93 -104.27 -0.62 -4.54 16 22 C 0.30 6.78 14.29 -22.49 -0.32 6.46 16 23 N -0.50 -11.87 18.53 41.82 0.78 -11.10 16 24 C 0.03 0.62 8.61 -38.83 -0.33 0.29 16 25 C 0.10 1.56 5.67 -38.67 -0.22 1.34 16 26 O -0.32 -5.14 8.99 -34.05 -0.31 -5.44 16 27 C 0.04 0.57 11.13 101.05 1.12 1.70 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 2.23 4.28 -52.49 -0.22 2.00 16 35 H 0.30 6.81 8.73 -40.82 -0.36 6.45 16 36 H 0.11 1.93 8.04 -52.48 -0.42 1.51 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -25.75 351.89 -5.36 -31.11 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.04 Total: 2.87 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.29 Total: -14.82 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 1.53 Total: -28.38 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.65 Total: -10.52 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.26 Total: 16.32 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -25.75 -5.36 -31.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245044888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.310 kcal (2) G-P(sol) polarization free energy of solvation -25.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds