Wall clock time and date at job start Tue Mar 31 2020 15:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36056 * 117.00183 * 2 1 4 4 C 1.38837 * 120.00423 * 90.00169 * 3 2 1 5 5 F 1.35095 * 119.86848 * 0.02562 * 4 3 2 6 6 C 1.38674 * 120.26690 * 180.02562 * 4 3 2 7 7 C 1.37859 * 120.28552 * 359.97438 * 6 4 3 8 8 C 1.39674 * 120.01338 * 359.97419 * 7 6 4 9 9 C 1.47854 * 120.13315 * 179.97438 * 8 7 6 10 10 C 1.40062 * 119.50017 * 56.16449 * 9 8 7 11 11 C 1.35956 * 121.18069 * 180.02562 * 10 9 8 12 12 C 1.41075 * 120.12007 * 359.97397 * 11 10 9 13 13 C 1.40391 * 120.48635 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00136 * 205.15590 * 13 12 11 15 15 C 1.40267 * 119.99775 * 25.14690 * 13 12 11 16 16 N 1.30656 * 120.00027 * 202.63436 * 15 13 12 17 17 Si 1.86800 * 120.00073 * 22.63794 * 15 13 12 18 18 H 1.48505 * 109.46883 * 269.99510 * 17 15 13 19 19 H 1.48494 * 109.47229 * 29.99569 * 17 15 13 20 20 H 1.48498 * 109.47418 * 149.99777 * 17 15 13 21 21 C 1.46661 * 119.03131 * 0.29751 * 12 11 10 22 22 C 1.43203 * 120.56165 * 179.72306 * 21 12 11 23 23 N 8.16383 * 85.69707 * 308.83540 * 2 1 3 24 24 C 1.39045 * 118.87704 * 359.42740 * 21 12 11 25 25 C 1.38844 * 120.01707 * 270.21794 * 3 2 1 26 26 O 1.35883 * 120.13755 * 359.97438 * 25 3 2 27 27 C 1.42908 * 116.99744 * 275.08641 * 26 25 3 28 28 H 1.08993 * 109.47356 * 299.99666 * 1 2 3 29 29 H 1.09003 * 109.47365 * 59.99399 * 1 2 3 30 30 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.86160 * 179.97438 * 6 4 3 32 32 H 1.07996 * 119.99494 * 180.02562 * 7 6 4 33 33 H 1.07999 * 119.41187 * 359.97204 * 10 9 8 34 34 H 1.08002 * 119.94335 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99835 * 354.96094 * 16 15 13 36 36 H 1.08007 * 120.10051 * 180.26473 * 24 21 12 37 37 H 1.09000 * 109.46603 * 184.98394 * 27 26 25 38 38 H 1.08996 * 109.47009 * 304.98763 * 27 26 25 39 39 H 1.08997 * 109.46731 * 64.98495 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3619 1.8308 1.2023 5 9 2.0546 1.2264 2.3708 6 6 2.9911 3.0666 1.2087 7 6 3.3092 3.6910 0.0214 8 6 2.9984 3.0788 -1.1950 9 6 3.3378 3.7463 -2.4699 10 6 4.6640 4.1208 -2.7206 11 6 5.0141 4.7368 -3.8809 12 6 4.0362 5.0103 -4.8603 13 6 4.3892 5.6456 -6.0614 14 1 3.6503 6.2091 -6.6118 15 6 5.7017 5.5487 -6.5465 16 7 6.1606 6.4497 -7.3740 17 14 6.7937 4.1313 -6.0096 18 1 7.5395 4.5175 -4.7849 19 1 5.9540 2.9406 -5.7230 20 1 7.7557 3.8092 -7.0940 21 6 2.6442 4.6268 -4.6027 22 6 1.6241 4.8940 -5.5716 23 7 0.8164 5.1050 -6.3413 24 6 2.3329 3.9936 -3.4046 25 6 2.3580 1.8332 -1.2022 26 8 2.0474 1.2325 -2.3808 27 6 2.9852 0.2829 -2.8919 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.2329 3.5421 2.1477 32 1 3.7994 4.6531 0.0319 33 1 5.4219 3.9174 -1.9786 34 1 6.0428 5.0166 -4.0536 35 1 5.5723 7.1439 -7.7100 36 1 1.3149 3.6986 -3.1964 37 1 2.6606 -0.0546 -3.8761 38 1 3.9669 0.7494 -2.9731 39 1 3.0432 -0.5703 -2.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245044888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:25 Heat of formation + Delta-G solvation = -65.446391 kcal Electronic energy + Delta-G solvation = -26986.636991 eV Core-core repulsion = 22966.671241 eV Total energy + Delta-G solvation = -4019.965750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.90847 -41.38749 -39.71705 -38.68092 -37.93673 -37.06477 -35.94230 -33.14723 -31.97062 -31.05842 -30.37302 -28.16874 -27.50397 -26.78558 -24.27229 -23.58379 -23.26409 -22.51535 -20.25562 -19.62397 -19.02110 -18.34981 -17.96126 -17.22400 -16.82729 -16.68080 -16.52469 -16.13687 -15.90978 -15.87917 -15.67435 -15.40391 -15.31333 -14.84058 -14.55316 -14.42781 -14.04317 -13.89525 -13.69480 -13.38656 -13.30966 -13.13711 -12.77196 -12.72528 -12.60590 -12.34450 -12.24531 -12.04238 -11.77261 -11.46298 -11.40485 -10.92750 -10.65496 -9.94805 -9.70735 -9.62774 -9.59192 -9.13132 -6.74082 -0.11505 -0.03699 0.29689 0.82347 1.40645 1.59836 1.80665 1.92684 2.08277 2.15995 2.31419 2.56314 2.62260 2.92156 3.32487 3.43250 3.46636 3.85209 3.96133 4.18527 4.21984 4.32653 4.37916 4.43292 4.47219 4.51352 4.54568 4.67840 4.76175 4.81720 4.85223 4.88423 4.99672 5.15807 5.20504 5.29383 5.38454 5.48901 5.62742 5.70249 5.88987 5.91216 6.17933 6.19848 6.38915 6.57430 6.63097 6.84450 7.71325 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003774 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.737802 B = 7417.013485 C = 7883.440225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.342 6.342 3 C 0.029 3.971 4 C 0.067 3.933 5 F -0.139 7.139 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.027 4.027 9 C -0.187 4.187 10 C -0.010 4.010 11 C -0.252 4.252 12 C 0.129 3.871 13 C -0.505 4.505 14 H 0.045 0.955 15 C 0.017 3.983 16 N -0.799 5.799 17 Si 1.097 2.903 18 H -0.232 1.232 19 H -0.252 1.252 20 H -0.282 1.282 21 C -0.201 4.201 22 C 0.301 3.699 23 N -0.529 5.529 24 C 0.028 3.972 25 C 0.092 3.908 26 O -0.339 6.339 27 C 0.040 3.960 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.117 0.883 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.285 0.715 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -10.192 17.452 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.259 6.259 3 C -0.016 4.016 4 C 0.047 3.953 5 F -0.117 7.117 6 C -0.148 4.148 7 C -0.090 4.090 8 C -0.028 4.028 9 C -0.188 4.188 10 C -0.029 4.029 11 C -0.271 4.271 12 C 0.124 3.876 13 C -0.532 4.532 14 H 0.063 0.937 15 C -0.203 4.203 16 N -0.418 5.418 17 Si 0.915 3.085 18 H -0.157 1.157 19 H -0.176 1.176 20 H -0.209 1.209 21 C -0.206 4.206 22 C -0.008 4.008 23 N -0.209 5.209 24 C 0.008 3.992 25 C 0.048 3.952 26 O -0.256 6.256 27 C -0.054 4.054 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.094 -10.528 15.947 19.109 hybrid contribution -1.885 1.095 -0.289 2.199 sum -1.791 -9.433 15.658 18.367 Atomic orbital electron populations 1.23188 0.77260 1.04772 1.00807 1.85997 1.21638 1.23919 1.94319 1.19090 1.02809 0.88418 0.91241 1.18145 1.03545 0.93605 0.80031 1.91463 1.91376 1.83298 1.45607 1.21318 0.99640 0.92630 1.01178 1.21415 0.98140 1.00461 0.89023 1.19152 0.96719 0.92964 0.93961 1.17712 0.93419 1.12477 0.95212 1.20761 0.94796 0.91708 0.95622 1.20882 0.99046 1.11197 0.95940 1.18683 0.89906 0.86794 0.92239 1.20775 0.98129 1.27486 1.06817 0.93679 1.28805 0.97774 1.00780 0.92893 1.70531 1.38516 1.09208 1.23566 0.83408 0.74883 0.72726 0.77506 1.15664 1.17555 1.20905 1.16921 0.89913 1.18387 0.95413 1.26086 0.91736 0.90920 0.92094 1.80986 1.13305 1.14609 1.11973 1.20705 0.98094 0.90730 0.89705 1.19051 0.99505 0.92017 0.84641 1.85934 1.46684 1.58219 1.34757 1.23070 0.92371 0.90364 0.99605 0.93178 0.93564 0.86505 0.81014 0.81624 0.83873 0.85712 0.90402 0.87178 0.87992 0.93265 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 16 2 O -0.34 -9.11 10.05 -80.15 -0.81 -9.92 16 3 C 0.03 0.79 5.74 22.56 0.13 0.92 16 4 C 0.07 1.58 7.31 22.52 0.16 1.75 16 5 F -0.14 -3.39 17.10 44.97 0.77 -2.62 16 6 C -0.13 -2.42 10.00 22.28 0.22 -2.19 16 7 C -0.07 -1.48 9.60 22.53 0.22 -1.27 16 8 C -0.03 -0.73 5.38 -19.94 -0.11 -0.84 16 9 C -0.19 -5.92 5.16 -20.00 -0.10 -6.03 16 10 C -0.01 -0.32 9.44 22.18 0.21 -0.11 16 11 C -0.25 -9.39 7.35 22.44 0.16 -9.23 16 12 C 0.13 5.76 5.35 -19.86 -0.11 5.65 16 13 C -0.51 -25.25 8.92 23.29 0.21 -25.04 16 14 H 0.04 2.53 7.52 -2.91 -0.02 2.51 16 15 C 0.02 0.80 5.37 85.36 0.46 1.26 16 16 N -0.80 -39.43 13.64 21.88 0.30 -39.13 16 17 Si 1.10 40.35 25.05 68.60 1.72 42.07 16 18 H -0.23 -7.22 6.35 99.48 0.63 -6.59 16 19 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 20 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 21 C -0.20 -8.69 5.93 -19.64 -0.12 -8.81 16 22 C 0.30 14.22 14.29 88.34 1.26 15.48 16 23 N -0.53 -26.17 18.53 19.00 0.35 -25.82 16 24 C 0.03 1.05 8.61 22.76 0.20 1.25 16 25 C 0.09 2.63 5.67 22.86 0.13 2.76 16 26 O -0.34 -10.27 8.99 -78.20 -0.70 -10.97 16 27 C 0.04 1.00 11.13 113.37 1.26 2.26 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.13 4.44 4.28 -2.91 -0.01 4.42 16 35 H 0.28 14.18 8.73 -92.71 -0.81 13.37 16 36 H 0.11 3.94 8.04 -2.91 -0.02 3.91 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -58.62 351.89 8.07 -50.54 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.99 Total: 16.10 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.45 Total: -20.24 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.65 Total: -64.95 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.51 Total: -20.89 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.77 Total: -2.62 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.72 Total: 42.07 kcal Total: -58.62 8.07 -50.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245044888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.903 kcal (2) G-P(sol) polarization free energy of solvation -58.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds