Wall clock time and date at job start Tue Mar 31 2020 15:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36055 * 117.00055 * 2 1 4 4 C 1.38800 * 120.02692 * 89.99526 * 3 2 1 5 5 F 1.35107 * 119.88456 * 0.02562 * 4 3 2 6 6 C 1.38551 * 120.22948 * 180.02562 * 4 3 2 7 7 C 1.37976 * 120.25375 * 359.97438 * 6 4 3 8 8 C 1.39416 * 120.03254 * 359.97438 * 7 6 4 9 9 C 1.48220 * 120.10812 * 179.97438 * 8 7 6 10 10 C 1.39859 * 119.54086 * 55.31438 * 9 8 7 11 11 C 1.37679 * 121.16640 * 180.02562 * 10 9 8 12 12 C 1.39606 * 120.19317 * 0.23134 * 11 10 9 13 13 C 1.43195 * 120.45872 * 179.71924 * 12 11 10 14 14 N 9.93991 * 109.15040 * 311.23194 * 2 1 3 15 15 C 1.46562 * 119.08837 * 359.49026 * 12 11 10 16 16 C 1.40849 * 120.54808 * 180.26677 * 15 12 11 17 17 H 1.08005 * 120.00189 * 28.91503 * 16 15 12 18 18 C 1.40227 * 120.00141 * 208.90876 * 16 15 12 19 19 N 1.30666 * 119.99786 * 10.47988 * 18 16 15 20 20 Si 1.86797 * 120.00144 * 190.47842 * 18 16 15 21 21 H 1.48497 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47258 * 120.00085 * 20 18 16 23 23 H 1.48506 * 109.47145 * 240.00169 * 20 18 16 24 24 C 1.38664 * 119.53633 * 235.28884 * 9 8 7 25 25 C 1.38889 * 120.01590 * 270.22885 * 3 2 1 26 26 O 1.35916 * 120.12900 * 359.97438 * 25 3 2 27 27 C 1.42903 * 117.00487 * 275.03430 * 26 25 3 28 28 H 1.08994 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47242 * 300.00871 * 1 2 3 30 30 H 1.09001 * 109.46755 * 60.00671 * 1 2 3 31 31 H 1.07993 * 119.87421 * 179.97438 * 6 4 3 32 32 H 1.07999 * 119.97956 * 179.97438 * 7 6 4 33 33 H 1.08001 * 119.41818 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.90526 * 179.97438 * 11 10 9 35 35 H 0.96998 * 120.00082 * 174.98550 * 19 18 16 36 36 H 1.08000 * 120.13914 * 0.02562 * 24 9 8 37 37 H 1.09000 * 109.46950 * 304.97853 * 27 26 25 38 38 H 1.08997 * 109.46892 * 64.97518 * 27 26 25 39 39 H 1.08994 * 109.47453 * 184.97715 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 2.3620 1.8312 1.2017 5 9 2.0548 1.2274 2.3707 6 6 2.9905 3.0659 1.2066 7 6 3.3081 3.6890 0.0172 8 6 2.9974 3.0766 -1.1960 9 6 3.3373 3.7447 -2.4747 10 6 4.6579 4.1349 -2.7191 11 6 5.0107 4.7583 -3.8949 12 6 4.0452 5.0175 -4.8693 13 6 4.4047 5.6709 -6.0917 14 7 4.6898 6.1889 -7.0616 15 6 2.6594 4.6071 -4.6261 16 6 1.6616 4.8483 -5.5905 17 1 1.9214 4.8880 -6.6381 18 6 0.3308 5.0368 -5.1906 19 7 0.0449 5.1933 -3.9253 20 14 -1.0330 5.0640 -6.4668 21 1 -0.4505 4.8652 -7.8182 22 1 -2.0009 3.9747 -6.1803 23 1 -1.7321 6.3733 -6.4163 24 6 2.3415 3.9736 -3.4122 25 6 2.3579 1.8335 -1.2026 26 8 2.0470 1.2325 -2.3814 27 6 2.9851 0.2838 -2.8933 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.2328 3.5424 2.1449 32 1 3.7977 4.6516 0.0262 33 1 5.4142 3.9446 -1.9719 34 1 6.0367 5.0514 -4.0622 35 1 -0.8644 5.3960 -3.6551 36 1 1.3258 3.6670 -3.2103 37 1 3.9664 0.7512 -2.9754 38 1 3.0443 -0.5694 -2.2176 39 1 2.6600 -0.0539 -3.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245045624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:18 Heat of formation + Delta-G solvation = -49.174293 kcal Electronic energy + Delta-G solvation = -27217.233774 eV Core-core repulsion = 23197.973635 eV Total energy + Delta-G solvation = -4019.260139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.79587 -40.20044 -38.07508 -37.32909 -36.69942 -35.11483 -34.09246 -31.54552 -30.09134 -29.85612 -28.31577 -26.99904 -26.34615 -25.78701 -23.29743 -22.40068 -21.19685 -20.86344 -18.22901 -17.77887 -17.45958 -17.19294 -16.78733 -16.09800 -15.72841 -15.46938 -15.03981 -14.83688 -14.70581 -14.36364 -14.23672 -13.99146 -13.41204 -13.16147 -12.92918 -12.82965 -12.68833 -12.29528 -11.92924 -11.86892 -11.74748 -11.59789 -11.52657 -11.34204 -11.28208 -11.17314 -10.83211 -10.59875 -10.33126 -10.08057 -9.86093 -9.58744 -9.43632 -8.58104 -8.51861 -7.74127 -7.42367 -7.09201 -4.75076 1.04488 1.08272 2.06475 2.63842 2.92905 2.99025 3.00787 3.29556 3.69250 3.70337 3.89052 4.02255 4.14596 4.43809 4.45066 4.95672 5.02101 5.26159 5.31441 5.32788 5.39953 5.43287 5.46292 5.59851 5.64529 5.66242 5.84053 5.93981 5.98672 6.09931 6.24870 6.29053 6.48922 6.63458 6.70477 6.80471 6.97655 7.15421 7.29806 7.42833 7.66147 7.68997 7.80095 7.85789 8.18893 8.43104 8.51384 8.79323 9.79071 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.004507 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.689363 B = 6211.620457 C = 7369.838585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.326 6.326 3 C 0.037 3.963 4 C 0.076 3.924 5 F -0.137 7.137 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.029 4.029 9 C -0.030 4.030 10 C -0.230 4.230 11 C -0.033 4.033 12 C -0.182 4.182 13 C 0.300 3.700 14 N -0.509 5.509 15 C 0.146 3.854 16 C -0.428 4.428 17 H 0.086 0.914 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.916 3.084 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.269 1.269 24 C -0.110 4.110 25 C 0.117 3.883 26 O -0.315 6.315 27 C 0.042 3.958 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.289 0.711 36 H 0.135 0.865 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -7.818 10.222 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.242 6.242 3 C -0.008 4.008 4 C 0.056 3.944 5 F -0.115 7.115 6 C -0.167 4.167 7 C -0.092 4.092 8 C -0.030 4.030 9 C -0.031 4.031 10 C -0.250 4.250 11 C -0.054 4.054 12 C -0.188 4.188 13 C -0.010 4.010 14 N -0.189 5.189 15 C 0.140 3.860 16 C -0.456 4.456 17 H 0.104 0.896 18 C -0.148 4.148 19 N -0.393 5.393 20 Si 0.739 3.261 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.129 4.129 25 C 0.072 3.928 26 O -0.231 6.231 27 C -0.052 4.052 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.406 -7.217 8.811 11.396 hybrid contribution -0.864 -0.116 0.320 0.929 sum -1.270 -7.334 9.131 11.780 Atomic orbital electron populations 1.23029 0.78644 1.03077 1.01064 1.86021 1.20253 1.23708 1.94260 1.18955 1.02627 0.88290 0.90946 1.17899 1.03110 0.92905 0.80442 1.91465 1.91326 1.83153 1.45593 1.21000 1.01881 0.93852 1.00000 1.21101 0.98396 0.99875 0.89848 1.19438 0.95500 0.93343 0.94677 1.18289 0.94079 0.99039 0.91676 1.20065 0.94538 1.11550 0.98810 1.20340 0.96406 0.96110 0.92514 1.17052 0.95657 1.14519 0.91565 1.25806 0.91158 0.91604 0.92415 1.81018 1.10905 1.14529 1.12408 1.18394 0.88811 0.86759 0.91990 1.19793 0.91188 1.39188 0.95441 0.89595 1.26074 1.00238 0.92139 0.96308 1.69658 1.22717 1.30154 1.16726 0.86093 0.79684 0.79044 0.81238 1.18002 1.19166 1.19424 1.21468 0.98622 0.99748 0.93053 1.18834 0.97689 0.91595 0.84712 1.86036 1.45395 1.57566 1.34072 1.22958 0.92783 0.90484 0.98961 0.88894 0.93801 0.92649 0.84278 0.83920 0.88361 0.88178 0.89948 0.84721 0.93126 0.93702 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.13 1.57 16 2 O -0.33 -5.03 10.06 -34.57 -0.35 -5.38 16 3 C 0.04 0.59 5.74 -39.13 -0.22 0.37 16 4 C 0.08 1.13 7.30 -39.26 -0.29 0.85 16 5 F -0.14 -2.01 17.10 2.25 0.04 -1.97 16 6 C -0.15 -1.95 10.00 -39.56 -0.40 -2.35 16 7 C -0.07 -1.07 9.58 -39.24 -0.38 -1.45 16 8 C -0.03 -0.50 5.39 -104.78 -0.56 -1.06 16 9 C -0.03 -0.58 5.16 -105.03 -0.54 -1.12 16 10 C -0.23 -4.24 9.50 -39.18 -0.37 -4.61 16 11 C -0.03 -0.64 9.74 -39.28 -0.38 -1.02 16 12 C -0.18 -4.04 5.95 -104.11 -0.62 -4.66 16 13 C 0.30 6.90 14.34 -22.48 -0.32 6.58 16 14 N -0.51 -12.11 18.54 41.83 0.78 -11.33 16 15 C 0.15 3.44 5.71 -104.68 -0.60 2.84 16 16 C -0.43 -10.32 8.53 -37.85 -0.32 -10.64 16 17 H 0.09 2.11 7.44 -52.48 -0.39 1.71 16 18 C 0.07 1.68 5.27 -17.30 -0.09 1.59 16 19 N -0.77 -17.57 10.83 55.56 0.60 -16.97 16 20 Si 0.92 17.35 29.58 -169.99 -5.03 12.32 16 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.11 -2.44 7.47 -38.55 -0.29 -2.73 16 25 C 0.12 2.01 5.66 -38.76 -0.22 1.79 16 26 O -0.31 -5.57 8.91 -34.13 -0.30 -5.87 16 27 C 0.04 0.61 11.13 101.05 1.12 1.73 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 36 H 0.14 3.20 6.15 -52.49 -0.32 2.88 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -26.39 356.89 -6.32 -32.71 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.08 Total: 3.45 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -3.35 Total: -12.33 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 1.38 Total: -28.30 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.65 Total: -11.26 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.39 -6.32 -32.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245045624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.466 kcal (2) G-P(sol) polarization free energy of solvation -26.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds