Wall clock time and date at job start Tue Mar 31 2020 15:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36055 * 117.00055 * 2 1 4 4 C 1.38800 * 120.02692 * 89.99526 * 3 2 1 5 5 F 1.35107 * 119.88456 * 0.02562 * 4 3 2 6 6 C 1.38551 * 120.22948 * 180.02562 * 4 3 2 7 7 C 1.37976 * 120.25375 * 359.97438 * 6 4 3 8 8 C 1.39416 * 120.03254 * 359.97438 * 7 6 4 9 9 C 1.48220 * 120.10812 * 179.97438 * 8 7 6 10 10 C 1.39859 * 119.54086 * 55.31438 * 9 8 7 11 11 C 1.37679 * 121.16640 * 180.02562 * 10 9 8 12 12 C 1.39606 * 120.19317 * 0.23134 * 11 10 9 13 13 C 1.43195 * 120.45872 * 179.71924 * 12 11 10 14 14 N 9.93991 * 109.15040 * 311.23194 * 2 1 3 15 15 C 1.46562 * 119.08837 * 359.49026 * 12 11 10 16 16 C 1.40849 * 120.54808 * 180.26677 * 15 12 11 17 17 H 1.08005 * 120.00189 * 28.91503 * 16 15 12 18 18 C 1.40227 * 120.00141 * 208.90876 * 16 15 12 19 19 N 1.30666 * 119.99786 * 10.47988 * 18 16 15 20 20 Si 1.86797 * 120.00144 * 190.47842 * 18 16 15 21 21 H 1.48497 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47258 * 120.00085 * 20 18 16 23 23 H 1.48506 * 109.47145 * 240.00169 * 20 18 16 24 24 C 1.38664 * 119.53633 * 235.28884 * 9 8 7 25 25 C 1.38889 * 120.01590 * 270.22885 * 3 2 1 26 26 O 1.35916 * 120.12900 * 359.97438 * 25 3 2 27 27 C 1.42903 * 117.00487 * 275.03430 * 26 25 3 28 28 H 1.08994 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47242 * 300.00871 * 1 2 3 30 30 H 1.09001 * 109.46755 * 60.00671 * 1 2 3 31 31 H 1.07993 * 119.87421 * 179.97438 * 6 4 3 32 32 H 1.07999 * 119.97956 * 179.97438 * 7 6 4 33 33 H 1.08001 * 119.41818 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.90526 * 179.97438 * 11 10 9 35 35 H 0.96998 * 120.00082 * 174.98550 * 19 18 16 36 36 H 1.08000 * 120.13914 * 0.02562 * 24 9 8 37 37 H 1.09000 * 109.46950 * 304.97853 * 27 26 25 38 38 H 1.08997 * 109.46892 * 64.97518 * 27 26 25 39 39 H 1.08994 * 109.47453 * 184.97715 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 2.3620 1.8312 1.2017 5 9 2.0548 1.2274 2.3707 6 6 2.9905 3.0659 1.2066 7 6 3.3081 3.6890 0.0172 8 6 2.9974 3.0766 -1.1960 9 6 3.3373 3.7447 -2.4747 10 6 4.6579 4.1349 -2.7191 11 6 5.0107 4.7583 -3.8949 12 6 4.0452 5.0175 -4.8693 13 6 4.4047 5.6709 -6.0917 14 7 4.6898 6.1889 -7.0616 15 6 2.6594 4.6071 -4.6261 16 6 1.6616 4.8483 -5.5905 17 1 1.9214 4.8880 -6.6381 18 6 0.3308 5.0368 -5.1906 19 7 0.0449 5.1933 -3.9253 20 14 -1.0330 5.0640 -6.4668 21 1 -0.4505 4.8652 -7.8182 22 1 -2.0009 3.9747 -6.1803 23 1 -1.7321 6.3733 -6.4163 24 6 2.3415 3.9736 -3.4122 25 6 2.3579 1.8335 -1.2026 26 8 2.0470 1.2325 -2.3814 27 6 2.9851 0.2838 -2.8933 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.2328 3.5424 2.1449 32 1 3.7977 4.6516 0.0262 33 1 5.4142 3.9446 -1.9719 34 1 6.0367 5.0514 -4.0622 35 1 -0.8644 5.3960 -3.6551 36 1 1.3258 3.6670 -3.2103 37 1 3.9664 0.7512 -2.9754 38 1 3.0443 -0.5694 -2.2176 39 1 2.6600 -0.0539 -3.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245045624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:18 Heat of formation + Delta-G solvation = -60.322280 kcal Electronic energy + Delta-G solvation = -27217.717187 eV Core-core repulsion = 23197.973635 eV Total energy + Delta-G solvation = -4019.743552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94636 -41.42221 -39.51543 -38.65421 -37.95883 -36.89463 -35.73719 -33.00250 -31.64600 -31.09633 -29.70423 -28.11925 -27.49140 -27.45138 -24.71602 -23.61184 -22.73276 -22.31772 -19.57092 -19.29546 -18.91213 -18.41774 -18.19438 -17.27760 -17.14046 -16.76665 -16.22497 -16.20181 -15.88644 -15.60683 -15.46700 -15.38662 -14.99100 -14.65546 -14.53989 -14.31417 -14.06403 -13.49915 -13.44305 -13.35416 -13.27746 -13.07961 -12.87447 -12.79592 -12.70789 -12.53519 -12.25599 -12.11551 -11.69576 -11.50317 -11.46071 -11.21654 -10.66332 -9.84733 -9.73184 -9.39574 -8.96811 -8.74791 -6.51301 -0.22078 -0.07196 0.47819 1.04962 1.35721 1.47833 1.48520 2.05986 2.09871 2.13852 2.41664 2.58208 2.71070 2.88080 3.27572 3.60121 3.65741 3.77183 3.92093 4.16781 4.28573 4.36709 4.41933 4.46016 4.48347 4.51164 4.62378 4.71660 4.80687 4.81873 4.94815 5.00697 5.06203 5.15707 5.30010 5.32523 5.49987 5.56419 5.81277 5.98744 6.09077 6.14984 6.19602 6.47999 6.60414 6.71090 6.82163 6.99127 8.14850 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.004507 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.689363 B = 6211.620457 C = 7369.838585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.339 6.339 3 C 0.027 3.973 4 C 0.075 3.925 5 F -0.135 7.135 6 C -0.131 4.131 7 C -0.066 4.066 8 C -0.056 4.056 9 C -0.015 4.015 10 C -0.215 4.215 11 C -0.030 4.030 12 C -0.201 4.201 13 C 0.305 3.695 14 N -0.531 5.531 15 C 0.127 3.873 16 C -0.466 4.466 17 H 0.068 0.932 18 C 0.044 3.956 19 N -0.793 5.793 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.261 1.261 24 C -0.130 4.130 25 C 0.104 3.896 26 O -0.338 6.338 27 C 0.041 3.959 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.296 0.704 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -8.146 12.546 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.256 6.256 3 C -0.019 4.019 4 C 0.055 3.945 5 F -0.114 7.114 6 C -0.150 4.150 7 C -0.084 4.084 8 C -0.056 4.056 9 C -0.016 4.016 10 C -0.234 4.234 11 C -0.050 4.050 12 C -0.207 4.207 13 C -0.003 4.003 14 N -0.211 5.211 15 C 0.122 3.878 16 C -0.495 4.495 17 H 0.086 0.914 18 C -0.175 4.175 19 N -0.417 5.417 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.181 1.181 23 H -0.186 1.186 24 C -0.149 4.149 25 C 0.060 3.940 26 O -0.255 6.255 27 C -0.053 4.053 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.194 0.806 32 H 0.182 0.818 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.306 -7.550 11.150 13.469 hybrid contribution -0.990 -0.116 -0.231 1.023 sum -0.685 -7.666 10.918 13.359 Atomic orbital electron populations 1.23200 0.77257 1.04865 1.00730 1.85991 1.21632 1.23662 1.94295 1.19044 1.03047 0.88649 0.91113 1.18067 1.02958 0.93406 0.80034 1.91472 1.91307 1.83254 1.45333 1.21318 0.99880 0.92734 1.01038 1.21319 0.97629 1.00403 0.89034 1.19451 0.97627 0.93884 0.94670 1.18515 0.93925 0.97257 0.91929 1.20481 0.94735 1.09303 0.98897 1.20676 0.97171 0.95285 0.91876 1.17298 0.95988 1.15355 0.92049 1.26040 0.90600 0.91230 0.92461 1.80996 1.11732 1.15484 1.12886 1.18644 0.89420 0.87110 0.92661 1.19822 0.92717 1.42133 0.94780 0.91423 1.26654 1.01412 0.91519 0.97929 1.69683 1.23483 1.30793 1.17717 0.85264 0.77322 0.79523 0.78477 1.19087 1.18081 1.18557 1.21246 0.98519 1.01325 0.93819 1.18974 0.98143 0.92000 0.84908 1.85999 1.46551 1.58267 1.34703 1.23073 0.92187 0.90311 0.99719 0.86140 0.93107 0.93959 0.80556 0.81757 0.84762 0.85316 0.89257 0.86834 0.93425 0.92568 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.13 113.37 1.26 2.05 16 2 O -0.34 -10.10 10.06 -80.16 -0.81 -10.90 16 3 C 0.03 0.82 5.74 22.56 0.13 0.95 16 4 C 0.08 2.03 7.30 22.48 0.16 2.20 16 5 F -0.14 -3.60 17.10 44.97 0.77 -2.83 16 6 C -0.13 -2.94 10.00 22.28 0.22 -2.72 16 7 C -0.07 -1.69 9.58 22.49 0.22 -1.47 16 8 C -0.06 -1.83 5.39 -19.96 -0.11 -1.94 16 9 C -0.02 -0.58 5.16 -20.13 -0.10 -0.68 16 10 C -0.21 -7.35 9.50 22.53 0.21 -7.14 16 11 C -0.03 -1.09 9.74 22.47 0.22 -0.88 16 12 C -0.20 -8.98 5.95 -19.53 -0.12 -9.09 16 13 C 0.31 14.27 14.34 88.33 1.27 15.53 16 14 N -0.53 -25.61 18.54 19.00 0.35 -25.25 16 15 C 0.13 6.16 5.71 -19.90 -0.11 6.05 16 16 C -0.47 -23.55 8.53 23.39 0.20 -23.35 16 17 H 0.07 3.53 7.44 -2.91 -0.02 3.50 16 18 C 0.04 2.06 5.27 85.35 0.45 2.51 16 19 N -0.79 -37.29 10.83 21.87 0.24 -37.06 16 20 Si 0.97 36.52 29.58 68.60 2.03 38.55 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 24 C -0.13 -5.90 7.47 22.94 0.17 -5.72 16 25 C 0.10 3.52 5.66 22.80 0.13 3.65 16 26 O -0.34 -12.10 8.91 -78.60 -0.70 -12.80 16 27 C 0.04 1.17 11.13 113.37 1.26 2.43 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.30 12.52 8.30 -92.71 -0.77 11.75 16 36 H 0.11 5.63 6.15 -2.91 -0.02 5.61 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -58.80 356.89 8.45 -50.36 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.10 Total: 17.55 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.46 Total: -17.61 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.59 Total: -62.31 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.51 Total: -23.71 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -58.80 8.45 -50.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245045624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.964 kcal (2) G-P(sol) polarization free energy of solvation -58.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds