Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35993 * 117.00465 * 2 1 4 4 C 1.39281 * 119.86054 * 0.02562 * 3 2 1 5 5 C 1.37739 * 120.63721 * 180.02562 * 4 3 2 6 6 C 1.39053 * 120.03536 * 359.97438 * 5 4 3 7 7 N 1.38016 * 133.11092 * 179.97438 * 6 5 4 8 8 H 0.96995 * 125.11751 * 0.03048 * 7 6 5 9 9 C 1.37566 * 109.76307 * 179.79580 * 7 6 5 10 10 C 1.47727 * 125.22517 * 180.27289 * 9 7 6 11 11 C 1.39534 * 120.16017 * 139.85255 * 10 9 7 12 12 C 1.37891 * 119.94908 * 179.69552 * 11 10 9 13 13 C 1.38732 * 120.27024 * 0.60686 * 12 11 10 14 14 F 1.35097 * 119.83509 * 179.69501 * 13 12 11 15 15 C 1.38334 * 120.32266 * 359.67213 * 13 12 11 16 16 C 1.38687 * 120.04505 * 0.02562 * 15 13 12 17 17 O 1.35630 * 120.13503 * 179.97438 * 16 15 13 18 18 C 1.34815 * 117.00001 * 354.39193 * 17 16 15 19 19 H 1.08001 * 119.99773 * 5.06833 * 18 17 16 20 20 C 1.38625 * 120.00109 * 185.06060 * 18 17 16 21 21 N 1.31575 * 119.99697 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00128 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46782 * 90.00356 * 22 20 18 24 24 H 1.48494 * 109.47222 * 210.00174 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00714 * 22 20 18 26 26 C 1.35738 * 109.54964 * 0.38527 * 9 7 6 27 27 C 1.40752 * 119.49656 * 0.02562 * 6 5 4 28 28 C 1.38007 * 119.86953 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46755 * 300.00082 * 1 2 3 31 31 H 1.08995 * 109.47250 * 59.99540 * 1 2 3 32 32 H 1.07999 * 119.67811 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.97826 * 180.02562 * 5 4 3 34 34 H 1.08006 * 120.02563 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.86449 * 180.27443 * 12 11 10 36 36 H 1.07995 * 119.97677 * 180.02562 * 15 13 12 37 37 H 0.97002 * 119.99640 * 179.97438 * 21 20 18 38 38 H 1.07994 * 126.51581 * 179.89131 * 26 9 7 39 39 H 1.08007 * 120.19449 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2851 2.3780 0.0005 5 6 1.8938 3.6136 0.0000 6 6 3.2813 3.7059 -0.0005 7 7 4.1555 4.7739 -0.0016 8 1 3.8950 5.7082 -0.0017 9 6 5.4519 4.3138 0.0029 10 6 6.6586 5.1660 0.0091 11 6 7.7601 4.8160 0.7908 12 6 8.8865 5.6114 0.7885 13 6 8.9254 6.7665 0.0210 14 9 10.0312 7.5425 0.0301 15 6 7.8375 7.1272 -0.7537 16 6 6.7002 6.3337 -0.7660 17 8 5.6324 6.6859 -1.5245 18 6 5.6940 7.8772 -2.1525 19 1 6.5983 8.4660 -2.1061 20 6 4.5969 8.3465 -2.8581 21 7 3.4952 7.6293 -2.9143 22 14 4.6826 9.9968 -3.7288 23 1 5.1771 9.7999 -5.1152 24 1 3.3292 10.6067 -3.7680 25 1 5.6097 10.8958 -2.9956 26 6 5.4522 2.9564 -0.0017 27 6 4.0541 2.5295 -0.0011 28 6 3.4248 1.2806 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2071 2.3129 0.0005 33 1 1.2931 4.5111 0.0009 34 1 7.7321 3.9204 1.3939 35 1 9.7400 5.3368 1.3906 36 1 7.8740 8.0273 -1.3492 37 1 2.7274 7.9578 -3.4077 38 1 6.3202 2.3139 -0.0014 39 1 4.0139 0.3754 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245593239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = -31.162016 kcal Electronic energy + Delta-G solvation = -26421.564010 eV Core-core repulsion = 22403.084942 eV Total energy + Delta-G solvation = -4018.479068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.45648 -40.80414 -39.36489 -38.72887 -36.59943 -35.26812 -32.58511 -31.63747 -30.71273 -29.47178 -28.89862 -27.27047 -26.67053 -25.62138 -23.15361 -22.09384 -21.57596 -20.75671 -19.82460 -18.48926 -17.85829 -17.42297 -17.16900 -16.07294 -15.57764 -15.52214 -15.41922 -15.27929 -15.16501 -14.41875 -14.05128 -14.00392 -13.67269 -13.55853 -13.38634 -13.24497 -12.95544 -12.74198 -12.54271 -12.32988 -11.92942 -11.86054 -11.73329 -11.43622 -11.31116 -10.98656 -10.87292 -10.62149 -10.39229 -10.23773 -9.83677 -9.29153 -9.10776 -8.46126 -7.85508 -7.18123 -7.00603 -6.73858 -4.33436 1.19887 1.76383 1.96886 2.03960 2.98114 2.99501 3.04323 3.24957 3.47166 3.70080 3.75475 4.20272 4.25755 4.66790 4.81769 4.93186 4.99009 5.11385 5.18557 5.20392 5.29135 5.39060 5.46519 5.55724 5.58059 5.73915 5.87569 5.88583 6.00051 6.26332 6.30688 6.38085 6.47325 6.60442 6.67077 6.67562 6.75012 6.81543 6.95894 7.04913 7.28649 7.42622 7.53648 7.68715 7.75275 8.16309 8.70651 9.30027 10.41608 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.003959 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.713796 B = 7070.867062 C = 9485.163668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.088 3.912 4 C -0.189 4.189 5 C -0.083 4.083 6 C 0.075 3.925 7 N -0.568 5.568 8 H 0.424 0.576 9 C 0.183 3.817 10 C -0.137 4.137 11 C -0.016 4.016 12 C -0.247 4.247 13 C 0.151 3.849 14 F -0.148 7.148 15 C -0.269 4.269 16 C 0.184 3.816 17 O -0.159 6.159 18 C -0.399 4.399 19 H 0.096 0.904 20 C 0.046 3.954 21 N -0.850 5.850 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.226 4.226 27 C -0.064 4.064 28 C -0.117 4.117 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.274 0.726 38 H 0.143 0.857 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -7.566 6.140 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.043 3.957 4 C -0.209 4.209 5 C -0.103 4.103 6 C -0.032 4.032 7 N -0.169 5.169 8 H 0.263 0.737 9 C 0.072 3.928 10 C -0.140 4.140 11 C -0.035 4.035 12 C -0.266 4.266 13 C 0.132 3.868 14 F -0.127 7.127 15 C -0.289 4.289 16 C 0.128 3.872 17 O -0.060 6.060 18 C -0.474 4.474 19 H 0.114 0.886 20 C -0.160 4.160 21 N -0.483 5.483 22 Si 0.767 3.233 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.190 1.190 26 C -0.251 4.251 27 C -0.070 4.070 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.161 0.839 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.273 -7.659 5.955 9.964 hybrid contribution -0.115 1.726 -0.663 1.852 sum -2.388 -5.933 5.292 8.301 Atomic orbital electron populations 1.22929 0.79313 1.03139 1.01059 1.86023 1.20571 1.27226 1.89972 1.18501 0.91828 0.83652 1.01698 1.20755 0.99195 0.91438 1.09527 1.19819 0.90855 0.97500 1.02147 1.18158 0.91323 0.87345 1.06418 1.42011 1.03888 1.08415 1.62614 0.73671 1.18470 0.82959 0.91979 0.99387 1.17271 0.94293 0.96883 1.05541 1.20534 0.90323 0.97672 0.94975 1.20489 1.00911 0.97579 1.07650 1.17576 0.82481 0.89629 0.97118 1.91432 1.51622 1.74345 1.95309 1.20978 0.94084 1.05590 1.08225 1.19045 0.87678 0.91569 0.88930 1.83915 1.33993 1.36239 1.51841 1.21412 1.01444 0.93744 1.30824 0.88628 1.25322 0.94152 0.99755 0.96786 1.70018 1.02871 1.37168 1.38226 0.85662 0.78371 0.79666 0.79568 1.19608 1.20040 1.18972 1.21424 0.94378 0.92196 1.17093 1.18782 0.93238 0.91255 1.03679 1.19501 0.90768 0.96443 1.06881 0.88896 0.93090 0.92999 0.85750 0.86055 0.85032 0.85675 0.83960 0.91568 0.83879 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.53 10.49 -19.72 -0.21 -4.74 16 3 C 0.09 1.38 6.68 -39.28 -0.26 1.12 16 4 C -0.19 -2.83 9.01 -39.38 -0.35 -3.18 16 5 C -0.08 -1.38 10.06 -39.46 -0.40 -1.78 16 6 C 0.08 1.42 7.26 -83.83 -0.61 0.81 16 7 N -0.57 -11.33 5.70 -7.27 -0.04 -11.37 16 8 H 0.42 8.77 8.29 -40.82 -0.34 8.43 16 9 C 0.18 3.56 6.31 -82.31 -0.52 3.04 16 10 C -0.14 -2.67 5.82 -104.80 -0.61 -3.28 16 11 C -0.02 -0.26 9.57 -39.23 -0.38 -0.64 16 12 C -0.25 -3.98 10.01 -39.53 -0.40 -4.38 16 13 C 0.15 2.77 7.30 -39.36 -0.29 2.48 16 14 F -0.15 -2.62 17.26 2.25 0.04 -2.58 16 15 C -0.27 -5.51 9.13 -39.38 -0.36 -5.87 16 16 C 0.18 4.05 6.65 -38.68 -0.26 3.79 16 17 O -0.16 -4.00 8.22 0.46 0.00 -3.99 16 18 C -0.40 -10.11 9.48 30.88 0.29 -9.82 16 19 H 0.10 2.27 5.21 -52.49 -0.27 2.00 16 20 C 0.05 1.16 5.49 -17.52 -0.10 1.07 16 21 N -0.85 -22.55 13.67 55.48 0.76 -21.79 16 22 Si 0.94 19.11 29.55 -169.99 -5.02 14.09 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.23 -4.06 10.68 -37.29 -0.40 -4.45 16 27 C -0.06 -1.18 6.35 -105.16 -0.67 -1.85 16 28 C -0.12 -1.93 10.04 -39.06 -0.39 -2.32 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 31 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 32 H 0.12 1.49 6.26 -52.49 -0.33 1.16 16 33 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.13 1.74 7.98 -52.48 -0.42 1.32 16 35 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.14 2.94 5.64 -52.49 -0.30 2.64 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 38 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -28.21 343.24 -7.69 -35.91 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -3.70 Total: 13.26 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -4.70 Total: -23.95 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.72 Total: -33.16 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.20 Total: -8.73 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.21 -7.69 -35.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245593239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.746 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds