Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35993 * 117.00465 * 2 1 4 4 C 1.39281 * 119.86054 * 0.02562 * 3 2 1 5 5 C 1.37739 * 120.63721 * 180.02562 * 4 3 2 6 6 C 1.39053 * 120.03536 * 359.97438 * 5 4 3 7 7 N 1.38016 * 133.11092 * 179.97438 * 6 5 4 8 8 H 0.96995 * 125.11751 * 0.03048 * 7 6 5 9 9 C 1.37566 * 109.76307 * 179.79580 * 7 6 5 10 10 C 1.47727 * 125.22517 * 180.27289 * 9 7 6 11 11 C 1.39534 * 120.16017 * 139.85255 * 10 9 7 12 12 C 1.37891 * 119.94908 * 179.69552 * 11 10 9 13 13 C 1.38732 * 120.27024 * 0.60686 * 12 11 10 14 14 F 1.35097 * 119.83509 * 179.69501 * 13 12 11 15 15 C 1.38334 * 120.32266 * 359.67213 * 13 12 11 16 16 C 1.38687 * 120.04505 * 0.02562 * 15 13 12 17 17 O 1.35630 * 120.13503 * 179.97438 * 16 15 13 18 18 C 1.34815 * 117.00001 * 354.39193 * 17 16 15 19 19 H 1.08001 * 119.99773 * 5.06833 * 18 17 16 20 20 C 1.38625 * 120.00109 * 185.06060 * 18 17 16 21 21 N 1.31575 * 119.99697 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00128 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46782 * 90.00356 * 22 20 18 24 24 H 1.48494 * 109.47222 * 210.00174 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00714 * 22 20 18 26 26 C 1.35738 * 109.54964 * 0.38527 * 9 7 6 27 27 C 1.40752 * 119.49656 * 0.02562 * 6 5 4 28 28 C 1.38007 * 119.86953 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46755 * 300.00082 * 1 2 3 31 31 H 1.08995 * 109.47250 * 59.99540 * 1 2 3 32 32 H 1.07999 * 119.67811 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.97826 * 180.02562 * 5 4 3 34 34 H 1.08006 * 120.02563 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.86449 * 180.27443 * 12 11 10 36 36 H 1.07995 * 119.97677 * 180.02562 * 15 13 12 37 37 H 0.97002 * 119.99640 * 179.97438 * 21 20 18 38 38 H 1.07994 * 126.51581 * 179.89131 * 26 9 7 39 39 H 1.08007 * 120.19449 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2851 2.3780 0.0005 5 6 1.8938 3.6136 0.0000 6 6 3.2813 3.7059 -0.0005 7 7 4.1555 4.7739 -0.0016 8 1 3.8950 5.7082 -0.0017 9 6 5.4519 4.3138 0.0029 10 6 6.6586 5.1660 0.0091 11 6 7.7601 4.8160 0.7908 12 6 8.8865 5.6114 0.7885 13 6 8.9254 6.7665 0.0210 14 9 10.0312 7.5425 0.0301 15 6 7.8375 7.1272 -0.7537 16 6 6.7002 6.3337 -0.7660 17 8 5.6324 6.6859 -1.5245 18 6 5.6940 7.8772 -2.1525 19 1 6.5983 8.4660 -2.1061 20 6 4.5969 8.3465 -2.8581 21 7 3.4952 7.6293 -2.9143 22 14 4.6826 9.9968 -3.7288 23 1 5.1771 9.7999 -5.1152 24 1 3.3292 10.6067 -3.7680 25 1 5.6097 10.8958 -2.9956 26 6 5.4522 2.9564 -0.0017 27 6 4.0541 2.5295 -0.0011 28 6 3.4248 1.2806 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2071 2.3129 0.0005 33 1 1.2931 4.5111 0.0009 34 1 7.7321 3.9204 1.3939 35 1 9.7400 5.3368 1.3906 36 1 7.8740 8.0273 -1.3492 37 1 2.7274 7.9578 -3.4077 38 1 6.3202 2.3139 -0.0014 39 1 4.0139 0.3754 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245593239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = -45.853638 kcal Electronic energy + Delta-G solvation = -26422.201087 eV Core-core repulsion = 22403.084942 eV Total energy + Delta-G solvation = -4019.116145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90485 -42.16467 -40.82600 -39.98188 -38.15588 -36.52018 -34.39142 -32.98429 -32.13548 -30.98033 -30.10172 -28.66852 -27.65867 -27.36309 -24.54889 -23.62459 -22.92864 -22.03877 -21.24727 -20.15811 -19.38039 -18.77138 -18.43202 -17.39252 -17.16220 -16.94480 -16.64227 -16.50907 -16.45029 -16.01898 -15.59438 -15.46984 -15.16675 -15.07367 -14.77713 -14.53812 -14.16420 -14.05609 -13.95127 -13.64112 -13.53348 -13.07533 -12.93636 -12.84353 -12.60949 -12.45196 -12.32713 -12.17879 -11.62233 -11.55315 -11.41953 -10.88647 -10.62870 -9.91515 -9.38183 -8.57524 -8.54318 -8.36779 -6.24046 -0.20569 0.36945 0.48546 0.74635 1.32515 1.39056 1.47549 1.82852 2.08732 2.26509 2.51620 2.67678 2.93966 3.02438 3.14926 3.38409 3.70848 3.82663 3.93835 4.06193 4.17097 4.23652 4.38347 4.46332 4.47440 4.48933 4.57053 4.67388 4.79890 4.85326 4.97448 5.03041 5.09605 5.11549 5.21099 5.26172 5.34614 5.41377 5.43684 5.70695 5.85764 5.95831 5.97067 6.19967 6.59572 6.66695 6.87649 7.57055 8.62847 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.003959 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.713796 B = 7070.867062 C = 9485.163668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.090 3.910 4 C -0.177 4.177 5 C -0.099 4.099 6 C 0.049 3.951 7 N -0.580 5.580 8 H 0.413 0.587 9 C 0.152 3.848 10 C -0.138 4.138 11 C -0.006 4.006 12 C -0.216 4.216 13 C 0.145 3.855 14 F -0.144 7.144 15 C -0.283 4.283 16 C 0.157 3.843 17 O -0.198 6.198 18 C -0.420 4.420 19 H 0.100 0.900 20 C -0.005 4.005 21 N -0.899 5.899 22 Si 1.010 2.990 23 H -0.267 1.267 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.215 4.215 27 C -0.083 4.083 28 C -0.125 4.125 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.130 0.870 37 H 0.274 0.726 38 H 0.171 0.829 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 -9.438 7.469 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.044 3.956 4 C -0.197 4.197 5 C -0.120 4.120 6 C -0.058 4.058 7 N -0.181 5.181 8 H 0.250 0.750 9 C 0.042 3.958 10 C -0.140 4.140 11 C -0.025 4.025 12 C -0.235 4.235 13 C 0.125 3.875 14 F -0.122 7.122 15 C -0.303 4.303 16 C 0.104 3.896 17 O -0.102 6.102 18 C -0.496 4.496 19 H 0.117 0.883 20 C -0.206 4.206 21 N -0.535 5.535 22 Si 0.830 3.170 23 H -0.192 1.192 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.240 4.240 27 C -0.088 4.088 28 C -0.144 4.144 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.146 0.854 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.189 0.811 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.507 -9.563 7.317 12.135 hybrid contribution -0.266 2.034 -0.875 2.230 sum -1.773 -7.529 6.442 10.066 Atomic orbital electron populations 1.23294 0.76885 1.05377 1.01978 1.86023 1.23054 1.26152 1.89598 1.18631 0.91865 0.84551 1.00542 1.21098 1.00820 0.90444 1.07327 1.20082 0.90351 0.98737 1.02782 1.18598 0.92350 0.87431 1.07469 1.42089 1.04570 1.08087 1.63340 0.74984 1.18717 0.82884 0.92745 1.01483 1.17664 0.95440 0.95870 1.05029 1.21016 0.88872 0.98717 0.93883 1.20992 1.01730 0.95380 1.05446 1.17687 0.81999 0.90546 0.97257 1.91446 1.51087 1.74421 1.95265 1.21006 0.94864 1.05382 1.09073 1.19528 0.87562 0.92877 0.89634 1.83915 1.35622 1.36606 1.54054 1.21760 1.01909 0.94492 1.31417 0.88317 1.26358 0.93620 1.03191 0.97395 1.70144 1.03740 1.39260 1.40354 0.84692 0.78584 0.75394 0.78311 1.19210 1.19469 1.18006 1.21778 0.95249 0.91725 1.15264 1.19018 0.93482 0.91703 1.04599 1.19726 0.91628 0.96343 1.06744 0.86199 0.91835 0.92318 0.82593 0.85412 0.80969 0.81471 0.85217 0.91687 0.81138 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.50 10.49 -93.47 -0.98 -9.49 16 3 C 0.09 2.66 6.68 22.47 0.15 2.81 16 4 C -0.18 -5.04 9.01 22.40 0.20 -4.84 16 5 C -0.10 -3.33 10.06 22.35 0.22 -3.11 16 6 C 0.05 1.88 7.26 38.98 0.28 2.17 16 7 N -0.58 -24.33 5.70 -176.91 -1.01 -25.34 16 8 H 0.41 18.58 8.29 -92.71 -0.77 17.81 16 9 C 0.15 5.99 6.31 40.17 0.25 6.24 16 10 C -0.14 -5.33 5.82 -19.98 -0.12 -5.45 16 11 C -0.01 -0.19 9.57 22.50 0.22 0.03 16 12 C -0.22 -6.17 10.01 22.31 0.22 -5.95 16 13 C 0.14 5.06 7.30 22.41 0.16 5.23 16 14 F -0.14 -4.81 17.26 44.97 0.78 -4.04 16 15 C -0.28 -11.87 9.13 22.40 0.20 -11.66 16 16 C 0.16 7.17 6.65 22.86 0.15 7.33 16 17 O -0.20 -10.63 8.22 -21.26 -0.17 -10.81 16 18 C -0.42 -22.63 9.48 67.91 0.64 -21.98 16 19 H 0.10 4.99 5.21 -2.91 -0.02 4.98 16 20 C -0.01 -0.27 5.49 84.82 0.47 0.20 16 21 N -0.90 -50.63 13.67 21.61 0.30 -50.33 16 22 Si 1.01 40.72 29.55 68.60 2.03 42.75 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 26 C -0.22 -7.54 10.68 23.75 0.25 -7.29 16 27 C -0.08 -3.01 6.35 -20.21 -0.13 -3.14 16 28 C -0.13 -3.99 10.04 22.61 0.23 -3.76 16 29 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 0.87 7.65 -2.39 -0.02 0.86 16 31 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 32 H 0.16 3.32 6.26 -2.91 -0.02 3.30 16 33 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.17 3.71 7.98 -2.91 -0.02 3.69 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.13 5.65 5.64 -2.91 -0.02 5.63 16 37 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 38 H 0.17 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -65.44 343.24 5.82 -59.61 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.36 Total: 39.41 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.53 Total: -41.78 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -0.71 Total: -75.67 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.16 Total: -20.29 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.04 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -65.44 5.82 -59.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245593239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.759 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds