Wall clock time and date at job start Tue Mar 31 2020 15:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 102.99858 * 2 1 4 4 C 1.38998 * 120.08212 * 359.97438 * 3 2 1 5 5 C 1.38062 * 119.91762 * 180.02562 * 4 3 2 6 6 C 1.38319 * 120.08234 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16169 * 359.97438 * 6 5 4 8 8 C 1.38101 * 120.07807 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.03887 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47293 * 265.00147 * 9 8 7 11 11 O 1.21286 * 120.00155 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00237 * 179.97438 * 10 9 8 13 13 C 1.39930 * 120.00210 * 174.86788 * 12 10 9 14 14 C 1.39295 * 119.94821 * 146.37518 * 13 12 10 15 15 C 1.38485 * 120.43057 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.32195 * 0.02657 * 15 14 13 17 17 C 1.40740 * 119.88452 * 0.02562 * 16 15 14 18 18 C 1.41408 * 120.21030 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99909 * 151.73862 * 18 17 16 20 20 C 1.39936 * 120.00094 * 331.73751 * 18 17 16 21 21 N 1.30830 * 119.99439 * 349.00676 * 20 18 17 22 22 Si 1.86794 * 120.00243 * 169.00871 * 20 18 17 23 23 H 1.48499 * 109.46921 * 89.99961 * 22 20 18 24 24 H 1.48495 * 109.47028 * 209.99823 * 22 20 18 25 25 H 1.48503 * 109.47155 * 330.00035 * 22 20 18 26 26 C 1.38243 * 119.94801 * 326.10527 * 13 12 10 27 27 H 1.08999 * 109.47486 * 60.00109 * 1 2 3 28 28 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47229 * 299.99697 * 1 2 3 30 30 H 1.08000 * 120.03541 * 0.04740 * 4 3 2 31 31 H 1.08003 * 119.95649 * 180.29919 * 5 4 3 32 32 H 1.08003 * 119.92052 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.95910 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47126 * 24.99923 * 9 8 7 35 35 H 1.08995 * 109.47283 * 145.00038 * 9 8 7 36 36 H 0.97003 * 119.99634 * 354.86768 * 12 10 9 37 37 H 1.07998 * 119.78320 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.83850 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.05940 * 179.97438 * 16 15 14 40 40 H 0.97002 * 119.99865 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.15960 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5095 4.0105 -0.0011 6 6 2.8328 4.4131 -0.0016 7 6 3.8455 3.4714 -0.0011 8 6 3.5386 2.1249 0.0005 9 6 4.6429 1.0995 0.0017 10 6 4.9267 0.6652 -1.4132 11 8 4.2942 1.1412 -2.3321 12 7 5.8834 -0.2521 -1.6575 13 6 6.0745 -0.7347 -2.9570 14 6 7.3535 -1.0746 -3.3916 15 6 7.5539 -1.5537 -4.6753 16 6 6.4900 -1.6989 -5.5371 17 6 5.1921 -1.3585 -5.1124 18 6 4.0943 -1.5053 -5.9916 19 1 3.1074 -1.6949 -5.5961 20 6 4.2867 -1.4050 -7.3740 21 7 5.4253 -0.9660 -7.8457 22 14 2.9180 -1.8978 -8.5458 23 1 2.0613 -0.7186 -8.8300 24 1 3.5079 -2.3981 -9.8134 25 1 2.0968 -2.9683 -7.9254 26 6 4.9927 -0.8787 -3.8057 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1616 2.3525 -0.0002 31 1 0.7211 4.7488 0.0034 32 1 3.0758 5.4654 -0.0024 33 1 4.8776 3.7894 -0.0011 34 1 5.5429 1.5353 0.4354 35 1 4.3364 0.2361 0.5921 36 1 6.4396 -0.5777 -0.9325 37 1 8.1942 -0.9645 -2.7226 38 1 8.5496 -1.8147 -5.0021 39 1 6.6512 -2.0725 -6.5375 40 1 5.5589 -0.8968 -8.8040 41 1 4.0001 -0.6200 -3.4682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272973271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:18 Heat of formation + Delta-G solvation = 8.773095 kcal Electronic energy + Delta-G solvation = -24343.766019 eV Core-core repulsion = 20893.231843 eV Total energy + Delta-G solvation = -3450.534176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94649 -38.80471 -37.03521 -34.34380 -33.06687 -32.79616 -31.32183 -29.74019 -28.92117 -28.75330 -26.90416 -25.21688 -22.89090 -22.35972 -21.12365 -20.68481 -19.45975 -17.79056 -17.46170 -16.59036 -16.14183 -15.76054 -15.44319 -14.96962 -14.59122 -14.56164 -14.27630 -14.09226 -13.97104 -13.60799 -13.19758 -12.98930 -12.82515 -12.59879 -12.51589 -12.16441 -11.95606 -11.60946 -11.54114 -11.24091 -11.14989 -11.04135 -10.58066 -10.44334 -10.15973 -10.05647 -9.74023 -9.65354 -9.40111 -9.11286 -8.88802 -8.70477 -7.36537 -7.34198 -6.80853 -6.59791 -4.27604 1.19946 1.30541 1.51943 2.39409 2.69918 2.90777 3.13381 3.18362 3.25259 3.45793 3.53363 3.92394 4.03702 4.60803 4.72750 4.75401 4.91681 4.93550 4.97104 5.17486 5.24648 5.36204 5.38387 5.47648 5.56592 5.75339 5.79479 5.94648 6.19337 6.30207 6.38892 6.45165 6.46805 6.85884 6.86730 7.09508 7.12992 7.16527 7.34540 7.64365 7.81260 8.04702 8.17154 8.26657 8.35903 8.72275 8.84294 9.02519 9.06297 10.33479 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.003653 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.187405 B = 7662.703299 C = 8679.127767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.104 6.104 3 C -0.067 4.067 4 C -0.135 4.135 5 C -0.103 4.103 6 C -0.125 4.125 7 C -0.089 4.089 8 C -0.043 4.043 9 C -0.106 4.106 10 C 0.507 3.493 11 O -0.500 6.500 12 N -0.671 5.671 13 C 0.151 3.849 14 C -0.259 4.259 15 C -0.095 4.095 16 C -0.168 4.168 17 C 0.118 3.882 18 C -0.457 4.457 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.802 5.802 22 Si 0.909 3.091 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.205 4.205 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.397 0.603 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.278 0.722 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 5.218 17.019 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.139 5.861 3 C -0.180 4.180 4 C -0.159 4.159 5 C -0.123 4.123 6 C -0.146 4.146 7 C -0.109 4.109 8 C -0.049 4.049 9 C -0.147 4.147 10 C 0.293 3.707 11 O -0.373 6.373 12 N -0.315 5.315 13 C 0.060 3.940 14 C -0.281 4.281 15 C -0.114 4.114 16 C -0.188 4.188 17 C 0.115 3.885 18 C -0.487 4.487 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.429 5.429 22 Si 0.734 3.266 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.226 4.226 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.230 0.770 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.167 4.544 16.149 17.554 hybrid contribution -1.065 0.915 -0.312 1.438 sum -6.232 5.459 15.838 17.874 Atomic orbital electron populations 1.23702 0.95586 1.07057 1.05422 1.85616 1.05745 1.02894 1.91814 1.21572 0.95930 0.96699 1.03805 1.21075 0.97933 0.93245 1.03618 1.20984 0.96611 0.95154 0.99514 1.21088 0.92742 0.99419 1.01363 1.20942 0.99563 0.91718 0.98668 1.18869 0.91464 0.93909 1.00705 1.20698 0.98550 0.99247 0.96175 1.20278 0.80548 0.79439 0.90465 1.90793 1.47698 1.53436 1.45374 1.43445 1.36346 1.42052 1.09696 1.17425 0.94096 0.98995 0.83507 1.20056 0.93451 1.16908 0.97669 1.20471 0.97403 1.00225 0.93323 1.21396 0.92544 1.05056 0.99832 1.17509 0.93133 0.87263 0.90556 1.19531 0.95517 1.43185 0.90480 0.90640 1.25866 0.96512 0.92620 0.99254 1.69809 1.24357 1.33746 1.14966 0.86295 0.81285 0.79761 0.79239 1.19590 1.20202 1.18578 1.21012 0.96704 1.08793 0.96123 0.89644 0.87438 0.90039 0.86020 0.85955 0.85871 0.85639 0.87910 0.87810 0.76967 0.89375 0.89123 0.86143 0.91120 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.15 101.05 0.92 -0.53 16 2 S -0.10 -1.42 20.86 -107.50 -2.24 -3.66 16 3 C -0.07 -0.96 6.11 -39.03 -0.24 -1.20 16 4 C -0.13 -1.69 9.36 -39.36 -0.37 -2.05 16 5 C -0.10 -1.17 10.04 -39.62 -0.40 -1.57 16 6 C -0.13 -1.44 10.04 -39.53 -0.40 -1.84 16 7 C -0.09 -1.14 9.67 -39.61 -0.38 -1.52 16 8 C -0.04 -0.62 4.39 -104.41 -0.46 -1.07 16 9 C -0.11 -1.41 5.30 -29.04 -0.15 -1.56 16 10 C 0.51 9.33 7.54 -10.99 -0.08 9.25 16 11 O -0.50 -11.70 13.75 5.55 0.08 -11.62 16 12 N -0.67 -12.23 5.34 -9.91 -0.05 -12.28 16 13 C 0.15 3.51 6.26 -83.77 -0.52 2.98 16 14 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 15 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 16 C -0.17 -4.53 8.66 -38.84 -0.34 -4.86 16 17 C 0.12 3.33 5.55 -106.85 -0.59 2.74 16 18 C -0.46 -12.87 9.06 -37.74 -0.34 -13.21 16 19 H 0.08 2.07 7.87 -52.49 -0.41 1.66 16 20 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 21 N -0.80 -21.73 10.82 55.55 0.60 -21.12 16 22 Si 0.91 19.68 29.57 -169.99 -5.03 14.65 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 26 C -0.20 -5.45 8.39 -38.68 -0.32 -5.78 16 27 H 0.08 0.84 7.75 -51.92 -0.40 0.44 16 28 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.08 0.64 7.75 -51.92 -0.40 0.24 16 30 H 0.12 1.26 5.88 -52.49 -0.31 0.95 16 31 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.10 1.24 7.02 -51.93 -0.36 0.87 16 36 H 0.40 5.50 8.82 -40.82 -0.36 5.14 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.32 6.18 -52.49 -0.32 3.00 16 40 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 41 H 0.11 2.99 6.44 -52.49 -0.34 2.65 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -33.54 358.92 -10.79 -44.34 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.00 Total: 11.55 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -4.56 Total: -27.26 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.55 Total: -33.40 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.24 Total: -3.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.54 -10.79 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.109 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds