Wall clock time and date at job start Tue Mar 31 2020 15:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 102.99858 * 2 1 4 4 C 1.38998 * 120.08212 * 359.97438 * 3 2 1 5 5 C 1.38062 * 119.91762 * 180.02562 * 4 3 2 6 6 C 1.38319 * 120.08234 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16169 * 359.97438 * 6 5 4 8 8 C 1.38101 * 120.07807 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.03887 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47293 * 265.00147 * 9 8 7 11 11 O 1.21286 * 120.00155 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00237 * 179.97438 * 10 9 8 13 13 C 1.39930 * 120.00210 * 174.86788 * 12 10 9 14 14 C 1.39295 * 119.94821 * 146.37518 * 13 12 10 15 15 C 1.38485 * 120.43057 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.32195 * 0.02657 * 15 14 13 17 17 C 1.40740 * 119.88452 * 0.02562 * 16 15 14 18 18 C 1.41408 * 120.21030 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99909 * 151.73862 * 18 17 16 20 20 C 1.39936 * 120.00094 * 331.73751 * 18 17 16 21 21 N 1.30830 * 119.99439 * 349.00676 * 20 18 17 22 22 Si 1.86794 * 120.00243 * 169.00871 * 20 18 17 23 23 H 1.48499 * 109.46921 * 89.99961 * 22 20 18 24 24 H 1.48495 * 109.47028 * 209.99823 * 22 20 18 25 25 H 1.48503 * 109.47155 * 330.00035 * 22 20 18 26 26 C 1.38243 * 119.94801 * 326.10527 * 13 12 10 27 27 H 1.08999 * 109.47486 * 60.00109 * 1 2 3 28 28 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47229 * 299.99697 * 1 2 3 30 30 H 1.08000 * 120.03541 * 0.04740 * 4 3 2 31 31 H 1.08003 * 119.95649 * 180.29919 * 5 4 3 32 32 H 1.08003 * 119.92052 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.95910 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47126 * 24.99923 * 9 8 7 35 35 H 1.08995 * 109.47283 * 145.00038 * 9 8 7 36 36 H 0.97003 * 119.99634 * 354.86768 * 12 10 9 37 37 H 1.07998 * 119.78320 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.83850 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.05940 * 179.97438 * 16 15 14 40 40 H 0.97002 * 119.99865 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.15960 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5095 4.0105 -0.0011 6 6 2.8328 4.4131 -0.0016 7 6 3.8455 3.4714 -0.0011 8 6 3.5386 2.1249 0.0005 9 6 4.6429 1.0995 0.0017 10 6 4.9267 0.6652 -1.4132 11 8 4.2942 1.1412 -2.3321 12 7 5.8834 -0.2521 -1.6575 13 6 6.0745 -0.7347 -2.9570 14 6 7.3535 -1.0746 -3.3916 15 6 7.5539 -1.5537 -4.6753 16 6 6.4900 -1.6989 -5.5371 17 6 5.1921 -1.3585 -5.1124 18 6 4.0943 -1.5053 -5.9916 19 1 3.1074 -1.6949 -5.5961 20 6 4.2867 -1.4050 -7.3740 21 7 5.4253 -0.9660 -7.8457 22 14 2.9180 -1.8978 -8.5458 23 1 2.0613 -0.7186 -8.8300 24 1 3.5079 -2.3981 -9.8134 25 1 2.0968 -2.9683 -7.9254 26 6 4.9927 -0.8787 -3.8057 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1616 2.3525 -0.0002 31 1 0.7211 4.7488 0.0034 32 1 3.0758 5.4654 -0.0024 33 1 4.8776 3.7894 -0.0011 34 1 5.5429 1.5353 0.4354 35 1 4.3364 0.2361 0.5921 36 1 6.4396 -0.5777 -0.9325 37 1 8.1942 -0.9645 -2.7226 38 1 8.5496 -1.8147 -5.0021 39 1 6.6512 -2.0725 -6.5375 40 1 5.5589 -0.8968 -8.8040 41 1 4.0001 -0.6200 -3.4682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272973271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:17 Heat of formation + Delta-G solvation = -10.079234 kcal Electronic energy + Delta-G solvation = -24344.583517 eV Core-core repulsion = 20893.231843 eV Total energy + Delta-G solvation = -3451.351674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35450 -39.98021 -38.81974 -36.15057 -34.79434 -33.98316 -32.22107 -31.72844 -30.34867 -29.72571 -28.23712 -27.22466 -23.87359 -23.70114 -22.81264 -22.29617 -21.04662 -19.52234 -18.57407 -18.06122 -17.45508 -17.04222 -16.94530 -16.55604 -16.39479 -15.76087 -15.54137 -15.23824 -14.98949 -14.81722 -14.75029 -14.53170 -14.11599 -13.90833 -13.64726 -13.49255 -13.40384 -13.11043 -12.98155 -12.82246 -12.56108 -12.50540 -12.21477 -12.04572 -11.94672 -11.55806 -11.22030 -11.12129 -10.89954 -10.68107 -10.56828 -9.78471 -9.34308 -8.68839 -8.56335 -8.37944 -6.37467 0.24629 0.36727 0.59079 0.90259 1.01607 1.34580 1.46389 1.48187 1.50269 1.86552 2.20569 2.28060 2.76704 2.81334 3.59537 3.75073 3.83907 4.02396 4.10422 4.19111 4.21667 4.29745 4.44059 4.48306 4.49411 4.59489 4.64810 4.77130 4.84092 5.03328 5.08393 5.13178 5.15209 5.26592 5.30034 5.35472 5.47272 5.54537 5.78934 5.88751 5.98824 6.09106 6.13960 6.37708 6.69287 6.71884 6.95819 7.02852 7.40546 8.38111 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.003653 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.187405 B = 7662.703299 C = 8679.127767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.163 6.163 3 C -0.084 4.084 4 C -0.148 4.148 5 C -0.106 4.106 6 C -0.130 4.130 7 C -0.102 4.102 8 C -0.071 4.071 9 C -0.092 4.092 10 C 0.507 3.493 11 O -0.554 6.554 12 N -0.660 5.660 13 C 0.158 3.842 14 C -0.247 4.247 15 C -0.094 4.094 16 C -0.194 4.194 17 C 0.087 3.913 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.033 3.967 21 N -0.833 5.833 22 Si 0.983 3.017 23 H -0.267 1.267 24 H -0.259 1.259 25 H -0.259 1.259 26 C -0.230 4.230 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.421 0.579 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.287 0.713 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 6.145 18.500 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.080 5.920 3 C -0.197 4.197 4 C -0.171 4.171 5 C -0.125 4.125 6 C -0.151 4.151 7 C -0.121 4.121 8 C -0.077 4.077 9 C -0.132 4.132 10 C 0.295 3.705 11 O -0.431 6.431 12 N -0.307 5.307 13 C 0.065 3.935 14 C -0.268 4.268 15 C -0.113 4.113 16 C -0.214 4.214 17 C 0.084 3.916 18 C -0.532 4.532 19 H 0.081 0.919 20 C -0.180 4.180 21 N -0.460 5.460 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.183 1.183 25 H -0.183 1.183 26 C -0.252 4.252 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.259 0.741 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.724 5.466 17.692 19.110 hybrid contribution -1.158 0.708 -0.629 1.496 sum -5.882 6.174 17.064 19.076 Atomic orbital electron populations 1.23753 0.91974 1.08272 1.06317 1.85664 1.09956 1.04193 1.92161 1.21754 0.96690 0.96562 1.04678 1.21408 0.98527 0.93711 1.03503 1.21401 0.97585 0.95285 0.98239 1.21496 0.92619 1.00697 1.00263 1.21281 1.00954 0.91464 0.98426 1.19131 0.91747 0.94796 1.02000 1.20683 1.00177 0.99914 0.92401 1.21209 0.78988 0.78219 0.92083 1.90774 1.49333 1.55315 1.47661 1.43374 1.36950 1.41806 1.08568 1.17515 0.93513 0.97416 0.85066 1.20506 0.94254 1.14429 0.97643 1.20854 0.97991 0.98986 0.93469 1.21353 0.93107 1.06923 1.00022 1.17848 0.94034 0.88201 0.91483 1.19729 0.95278 1.46008 0.92141 0.91912 1.26713 0.99264 0.91852 1.00210 1.69860 1.26126 1.34134 1.15833 0.85200 0.77913 0.79372 0.77144 1.19189 1.18277 1.18321 1.20935 0.96874 1.10588 0.96794 0.89952 0.86070 0.87821 0.84450 0.83100 0.83171 0.83947 0.84032 0.86507 0.74085 0.84910 0.85917 0.87673 0.90274 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.15 113.37 1.04 -1.51 16 2 S -0.16 -4.52 20.86 -56.49 -1.18 -5.70 16 3 C -0.08 -2.38 6.11 22.62 0.14 -2.25 16 4 C -0.15 -3.56 9.36 22.41 0.21 -3.35 16 5 C -0.11 -2.20 10.04 22.25 0.22 -1.97 16 6 C -0.13 -2.74 10.04 22.30 0.22 -2.51 16 7 C -0.10 -2.44 9.67 22.25 0.22 -2.23 16 8 C -0.07 -1.96 4.39 -19.73 -0.09 -2.04 16 9 C -0.09 -2.31 5.30 29.10 0.15 -2.16 16 10 C 0.51 18.50 7.54 87.66 0.66 19.16 16 11 O -0.55 -26.77 13.75 -3.05 -0.04 -26.81 16 12 N -0.66 -23.25 5.34 -303.65 -1.62 -24.87 16 13 C 0.16 7.29 6.26 38.10 0.24 7.53 16 14 C -0.25 -10.58 9.97 22.58 0.23 -10.35 16 15 C -0.09 -4.41 10.02 22.20 0.22 -4.18 16 16 C -0.19 -10.74 8.66 22.75 0.20 -10.54 16 17 C 0.09 5.15 5.55 -21.31 -0.12 5.04 16 18 C -0.50 -29.95 9.06 23.46 0.21 -29.74 16 19 H 0.06 3.72 7.87 -2.91 -0.02 3.70 16 20 C 0.03 1.79 5.25 85.25 0.45 2.24 16 21 N -0.83 -46.51 10.82 21.82 0.24 -46.28 16 22 Si 0.98 41.47 29.57 68.60 2.03 43.50 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.23 -12.82 8.39 22.85 0.19 -12.62 16 27 H 0.08 1.60 7.75 -2.39 -0.02 1.59 16 28 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 1.47 7.75 -2.39 -0.02 1.45 16 30 H 0.14 2.69 5.88 -2.91 -0.02 2.67 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.14 2.38 8.05 -2.39 -0.02 2.36 16 35 H 0.12 2.65 7.02 -2.39 -0.02 2.63 16 36 H 0.42 10.50 8.82 -92.71 -0.82 9.68 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.11 6.04 6.18 -2.91 -0.02 6.02 16 40 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 41 H 0.08 4.96 6.44 -2.91 -0.02 4.94 16 Total: -1.00 -78.37 358.92 4.06 -74.31 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.25 Total: 37.34 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 4.39 Total: -51.50 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.38 Total: -71.15 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -1.18 Total: -5.70 kcal Total: -78.37 4.06 -74.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.231 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds