Wall clock time and date at job start Tue Mar 31 2020 15:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46495 * 109.47063 * 120.00529 * 2 1 3 5 5 S 1.65601 * 120.00247 * 264.99765 * 4 2 1 6 6 O 1.42102 * 104.27176 * 308.92718 * 5 4 2 7 7 O 1.42096 * 104.27737 * 181.07292 * 5 4 2 8 8 C 1.81397 * 104.44810 * 64.99874 * 5 4 2 9 9 C 1.53003 * 109.47007 * 174.34873 * 8 5 4 10 10 C 1.50698 * 115.54935 * 295.21555 * 9 8 5 11 11 H 1.08001 * 119.99726 * 95.16712 * 10 9 8 12 12 C 1.37871 * 120.00139 * 274.88884 * 10 9 8 13 13 N 1.31511 * 120.00160 * 6.45471 * 12 10 9 14 14 Si 1.86801 * 120.00201 * 186.45126 * 12 10 9 15 15 H 1.48502 * 109.47104 * 59.99786 * 14 12 10 16 16 H 1.48496 * 109.47408 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47157 * 300.00310 * 14 12 10 18 18 C 1.52999 * 117.49873 * 80.88680 * 9 8 5 19 19 C 1.53005 * 117.49892 * 149.54709 * 9 8 5 20 20 C 1.50700 * 109.46698 * 240.00124 * 2 1 3 21 21 C 1.38241 * 119.97618 * 279.72937 * 20 2 1 22 22 C 1.38199 * 120.02324 * 179.72769 * 21 20 2 23 23 C 1.38461 * 119.97515 * 0.52541 * 22 21 20 24 24 F 1.35102 * 120.02514 * 179.73157 * 23 22 21 25 25 C 1.38457 * 119.95039 * 359.74608 * 23 22 21 26 26 C 1.38200 * 119.97002 * 0.02562 * 25 23 22 27 27 H 1.09010 * 109.46780 * 299.99930 * 1 2 3 28 28 H 1.09004 * 109.47358 * 59.98932 * 1 2 3 29 29 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99752 * 84.99616 * 4 2 1 31 31 H 1.08992 * 109.47409 * 54.35140 * 8 5 4 32 32 H 1.09005 * 109.47230 * 294.34546 * 8 5 4 33 33 H 0.96998 * 120.00500 * 185.03880 * 13 12 10 34 34 H 1.09003 * 117.49965 * 215.00577 * 18 9 8 35 35 H 1.09003 * 117.49841 * 0.02562 * 18 9 8 36 36 H 1.08993 * 117.49683 * 359.97426 * 19 9 8 37 37 H 1.08994 * 117.49517 * 144.97407 * 19 9 8 38 38 H 1.07995 * 119.98517 * 359.97438 * 21 20 2 39 39 H 1.08007 * 120.01526 * 180.25716 * 22 21 20 40 40 H 1.08000 * 120.01412 * 179.97438 * 25 23 22 41 41 H 1.08001 * 119.98345 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1769 2.5505 6 8 3.2876 1.1903 2.0751 7 8 2.8606 -0.8033 3.4764 8 6 0.8408 0.8987 3.0985 9 6 1.0476 1.6166 4.4338 10 6 1.4272 0.7337 5.5945 11 1 2.4668 0.6042 5.8571 12 6 0.4471 0.0957 6.3248 13 7 -0.8072 0.1540 5.9338 14 14 0.9008 -0.8517 7.8695 15 1 1.5342 0.0695 8.8470 16 1 -0.3244 -1.4414 8.4663 17 1 1.8536 -1.9368 7.5228 18 6 1.6428 3.0255 4.3936 19 6 0.1621 2.8291 4.7285 20 6 2.0322 -0.7104 -1.2305 21 6 2.0716 -2.0919 -1.2628 22 6 2.5267 -2.7444 -2.3928 23 6 2.9535 -2.0139 -3.4888 24 9 3.4037 -2.6507 -4.5920 25 6 2.9189 -0.6302 -3.4533 26 6 2.4590 0.0201 -2.3239 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1109 -1.6563 1.1947 31 1 0.1012 0.1077 3.2221 32 1 0.4890 1.6120 2.3531 33 1 -1.5056 -0.2320 6.4853 34 1 2.3091 3.3138 5.2067 35 1 1.8867 3.4411 3.4159 36 1 -0.5674 3.1155 3.9710 37 1 -0.1461 2.9878 5.7618 38 1 1.7429 -2.6614 -0.4061 39 1 2.5535 -3.8239 -2.4194 40 1 3.2520 -0.0594 -4.3074 41 1 2.4315 1.0994 -2.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364986483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:47 Heat of formation + Delta-G solvation = -73.092839 kcal Electronic energy + Delta-G solvation = -25873.175514 eV Core-core repulsion = 21988.322140 eV Total energy + Delta-G solvation = -3884.853374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.09335 -39.67380 -36.79245 -36.40533 -35.90004 -35.11765 -32.04087 -31.46712 -30.70281 -29.04013 -28.07415 -25.46384 -23.87661 -23.28239 -21.27473 -21.10392 -19.78464 -18.76232 -17.99273 -17.22362 -16.78697 -16.41776 -16.05318 -15.79025 -15.17833 -15.08334 -14.70972 -14.49405 -14.12532 -13.90456 -13.84285 -13.69086 -13.30855 -13.24455 -12.78816 -12.49671 -11.99021 -11.91866 -11.83139 -11.49098 -11.34685 -11.24685 -11.19151 -11.07403 -10.93030 -10.88260 -10.59947 -10.49855 -10.13966 -9.80576 -9.39767 -9.33225 -8.97798 -8.78083 -8.54907 -8.13469 -6.14762 -4.23785 0.84564 0.98953 1.07959 3.25375 3.32757 3.34915 3.42241 3.45028 4.02908 4.35840 4.38346 4.46312 4.54432 4.64977 4.94232 4.98040 5.02112 5.10996 5.14801 5.14899 5.23849 5.37039 5.60201 5.64814 5.69389 5.79193 5.85974 5.88158 5.97822 6.01935 6.14336 6.22635 6.31947 6.39502 6.57462 6.64306 6.66826 6.95167 7.17748 7.22298 7.36017 7.81282 8.18845 8.82496 9.47176 10.93585 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.003277 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745384 B = 8543.237644 C = 8966.732075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 H 0.101 0.899 4 N -1.126 6.126 5 S 2.602 3.398 6 O -0.977 6.977 7 O -0.942 6.942 8 C -0.553 4.553 9 C 0.043 3.957 10 C -0.507 4.507 11 H 0.070 0.930 12 C 0.080 3.920 13 N -0.877 5.877 14 Si 0.889 3.111 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.269 1.269 18 C -0.214 4.214 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.081 4.081 22 C -0.151 4.151 23 C 0.092 3.908 24 F -0.143 7.143 25 C -0.151 4.151 26 C -0.081 4.081 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.411 0.589 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 -1.652 -17.068 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.079 3.921 3 H 0.119 0.881 4 N -0.882 5.882 5 S 2.700 3.300 6 O -0.967 6.967 7 O -0.933 6.933 8 C -0.687 4.687 9 C 0.040 3.960 10 C -0.544 4.544 11 H 0.088 0.912 12 C -0.125 4.125 13 N -0.512 5.512 14 Si 0.716 3.284 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.194 1.194 18 C -0.252 4.252 19 C -0.177 4.177 20 C -0.090 4.090 21 C -0.099 4.099 22 C -0.170 4.170 23 C 0.073 3.927 24 F -0.121 7.121 25 C -0.170 4.170 26 C -0.100 4.100 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.245 0.755 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.683 -1.554 -16.743 16.899 hybrid contribution -0.582 -1.010 0.466 1.255 sum 1.102 -2.564 -16.278 16.515 Atomic orbital electron populations 1.22481 0.94116 1.03573 1.03322 1.19640 0.94090 0.96150 0.82261 0.88089 1.56185 1.84481 1.19688 1.27875 1.05283 0.77843 0.74655 0.72246 1.93500 1.62520 1.60754 1.79969 1.93575 1.79836 1.58727 1.61115 1.30078 1.20045 1.11662 1.06877 1.18306 1.01033 0.86113 0.90522 1.20514 0.93800 1.27358 1.12776 0.91240 1.24920 0.94918 0.95011 0.97601 1.69994 0.99662 1.44743 1.36851 0.86679 0.78035 0.80681 0.82990 1.20012 1.21235 1.19432 1.23256 0.97679 1.03023 1.01215 1.22529 0.90738 1.03606 1.00862 1.20045 0.99367 0.93966 0.95606 1.20847 0.97764 0.93893 0.97431 1.21135 1.02069 1.00829 0.92920 1.17746 1.00213 0.90809 0.83981 1.91494 1.86891 1.82297 1.51445 1.21124 1.03179 0.92517 1.00170 1.20942 0.96717 1.00546 0.91799 0.90764 0.91220 0.91458 0.75530 0.84562 0.88275 0.92791 0.89473 0.90657 0.91506 0.89529 0.84763 0.84642 0.84623 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.46 37.16 0.35 -1.44 16 2 C 0.19 2.18 3.01 -69.09 -0.21 1.97 16 3 H 0.10 1.18 7.34 -51.93 -0.38 0.80 16 4 N -1.13 -15.93 5.31 -5.89 -0.03 -15.96 16 5 S 2.60 50.27 5.33 -107.50 -0.57 49.70 16 6 O -0.98 -20.48 17.39 -57.54 -1.00 -21.48 16 7 O -0.94 -21.99 17.10 -57.54 -0.98 -22.97 16 8 C -0.55 -10.92 4.88 37.16 0.18 -10.74 16 9 C 0.04 1.00 1.34 -155.66 -0.21 0.79 16 10 C -0.51 -13.59 7.66 -34.44 -0.26 -13.85 16 11 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 12 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 13 N -0.88 -23.54 12.93 55.43 0.72 -22.82 16 14 Si 0.89 21.10 29.55 -169.99 -5.02 16.08 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 19 C -0.14 -3.04 9.44 -26.69 -0.25 -3.29 16 20 C -0.09 -0.94 4.96 -104.62 -0.52 -1.46 16 21 C -0.08 -0.81 9.16 -39.59 -0.36 -1.18 16 22 C -0.15 -1.47 10.03 -39.51 -0.40 -1.86 16 23 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 24 F -0.14 -1.56 17.27 2.25 0.04 -1.53 16 25 C -0.15 -1.42 10.03 -39.51 -0.40 -1.81 16 26 C -0.08 -0.78 9.67 -39.59 -0.38 -1.16 16 27 H 0.07 0.82 5.97 -51.92 -0.31 0.51 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.41 5.10 7.03 -34.47 -0.24 4.86 16 31 H 0.14 2.77 8.14 -51.93 -0.42 2.35 16 32 H 0.10 1.61 7.11 -51.92 -0.37 1.25 16 33 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.13 1.16 6.80 -52.49 -0.36 0.80 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -32.44 359.98 -9.97 -42.41 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.43 Total: 7.30 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: -3.11 Total: -36.14 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.69 Total: -38.78 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.98 Total: -44.46 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.57 Total: 49.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.44 -9.97 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364986483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.687 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds