Wall clock time and date at job start Tue Mar 31 2020 15:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46495 * 109.47063 * 120.00529 * 2 1 3 5 5 S 1.65601 * 120.00247 * 264.99765 * 4 2 1 6 6 O 1.42102 * 104.27176 * 308.92718 * 5 4 2 7 7 O 1.42096 * 104.27737 * 181.07292 * 5 4 2 8 8 C 1.81397 * 104.44810 * 64.99874 * 5 4 2 9 9 C 1.53003 * 109.47007 * 174.34873 * 8 5 4 10 10 C 1.50698 * 115.54935 * 295.21555 * 9 8 5 11 11 H 1.08001 * 119.99726 * 95.16712 * 10 9 8 12 12 C 1.37871 * 120.00139 * 274.88884 * 10 9 8 13 13 N 1.31511 * 120.00160 * 6.45471 * 12 10 9 14 14 Si 1.86801 * 120.00201 * 186.45126 * 12 10 9 15 15 H 1.48502 * 109.47104 * 59.99786 * 14 12 10 16 16 H 1.48496 * 109.47408 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47157 * 300.00310 * 14 12 10 18 18 C 1.52999 * 117.49873 * 80.88680 * 9 8 5 19 19 C 1.53005 * 117.49892 * 149.54709 * 9 8 5 20 20 C 1.50700 * 109.46698 * 240.00124 * 2 1 3 21 21 C 1.38241 * 119.97618 * 279.72937 * 20 2 1 22 22 C 1.38199 * 120.02324 * 179.72769 * 21 20 2 23 23 C 1.38461 * 119.97515 * 0.52541 * 22 21 20 24 24 F 1.35102 * 120.02514 * 179.73157 * 23 22 21 25 25 C 1.38457 * 119.95039 * 359.74608 * 23 22 21 26 26 C 1.38200 * 119.97002 * 0.02562 * 25 23 22 27 27 H 1.09010 * 109.46780 * 299.99930 * 1 2 3 28 28 H 1.09004 * 109.47358 * 59.98932 * 1 2 3 29 29 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99752 * 84.99616 * 4 2 1 31 31 H 1.08992 * 109.47409 * 54.35140 * 8 5 4 32 32 H 1.09005 * 109.47230 * 294.34546 * 8 5 4 33 33 H 0.96998 * 120.00500 * 185.03880 * 13 12 10 34 34 H 1.09003 * 117.49965 * 215.00577 * 18 9 8 35 35 H 1.09003 * 117.49841 * 0.02562 * 18 9 8 36 36 H 1.08993 * 117.49683 * 359.97426 * 19 9 8 37 37 H 1.08994 * 117.49517 * 144.97407 * 19 9 8 38 38 H 1.07995 * 119.98517 * 359.97438 * 21 20 2 39 39 H 1.08007 * 120.01526 * 180.25716 * 22 21 20 40 40 H 1.08000 * 120.01412 * 179.97438 * 25 23 22 41 41 H 1.08001 * 119.98345 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1769 2.5505 6 8 3.2876 1.1903 2.0751 7 8 2.8606 -0.8033 3.4764 8 6 0.8408 0.8987 3.0985 9 6 1.0476 1.6166 4.4338 10 6 1.4272 0.7337 5.5945 11 1 2.4668 0.6042 5.8571 12 6 0.4471 0.0957 6.3248 13 7 -0.8072 0.1540 5.9338 14 14 0.9008 -0.8517 7.8695 15 1 1.5342 0.0695 8.8470 16 1 -0.3244 -1.4414 8.4663 17 1 1.8536 -1.9368 7.5228 18 6 1.6428 3.0255 4.3936 19 6 0.1621 2.8291 4.7285 20 6 2.0322 -0.7104 -1.2305 21 6 2.0716 -2.0919 -1.2628 22 6 2.5267 -2.7444 -2.3928 23 6 2.9535 -2.0139 -3.4888 24 9 3.4037 -2.6507 -4.5920 25 6 2.9189 -0.6302 -3.4533 26 6 2.4590 0.0201 -2.3239 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1109 -1.6563 1.1947 31 1 0.1012 0.1077 3.2221 32 1 0.4890 1.6120 2.3531 33 1 -1.5056 -0.2320 6.4853 34 1 2.3091 3.3138 5.2067 35 1 1.8867 3.4411 3.4159 36 1 -0.5674 3.1155 3.9710 37 1 -0.1461 2.9878 5.7618 38 1 1.7429 -2.6614 -0.4061 39 1 2.5535 -3.8239 -2.4194 40 1 3.2520 -0.0594 -4.3074 41 1 2.4315 1.0994 -2.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364986483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:46 Heat of formation + Delta-G solvation = -93.351872 kcal Electronic energy + Delta-G solvation = -25874.054012 eV Core-core repulsion = 21988.322140 eV Total energy + Delta-G solvation = -3885.731871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.89208 -40.45578 -38.53977 -37.95468 -36.96658 -36.74296 -34.03955 -32.21931 -31.63927 -30.13824 -29.40825 -27.44299 -24.69782 -24.03860 -22.96939 -21.98131 -21.47880 -20.23935 -18.90240 -18.45830 -18.33710 -17.69041 -17.03028 -16.82726 -16.59826 -16.53691 -16.22344 -15.72459 -15.59602 -14.96345 -14.94665 -14.70711 -14.44866 -14.05039 -13.86444 -13.62297 -13.50636 -13.46812 -13.15226 -12.93263 -12.87714 -12.82551 -12.81058 -12.50024 -12.40335 -12.18996 -12.02794 -11.87011 -11.84855 -11.53546 -10.83924 -10.60715 -10.48757 -10.06306 -9.86059 -9.56508 -8.16452 -6.28581 -0.49751 0.12475 0.27906 1.40782 1.43347 1.50323 2.01081 2.43127 2.60626 2.98781 3.11875 3.27749 3.38158 3.46698 3.59115 3.76439 3.97171 4.03958 4.14570 4.21909 4.28504 4.37055 4.44115 4.52302 4.53984 4.64467 4.83178 4.89769 4.96359 4.99604 5.02038 5.12716 5.16120 5.24720 5.26009 5.36642 5.51540 5.57722 5.62162 5.76425 5.90985 6.12198 6.26550 6.77094 7.42930 8.90873 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.003277 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.745384 B = 8543.237644 C = 8966.732075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.181 3.819 3 H 0.104 0.896 4 N -1.113 6.113 5 S 2.620 3.380 6 O -0.995 6.995 7 O -0.991 6.991 8 C -0.548 4.548 9 C 0.010 3.990 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.043 3.957 13 N -0.891 5.891 14 Si 0.930 3.070 15 H -0.271 1.271 16 H -0.275 1.275 17 H -0.279 1.279 18 C -0.203 4.203 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.089 4.089 22 C -0.155 4.155 23 C 0.076 3.924 24 F -0.149 7.149 25 C -0.151 4.151 26 C -0.084 4.084 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.419 0.581 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -1.164 -18.707 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.074 3.926 3 H 0.122 0.878 4 N -0.874 5.874 5 S 2.717 3.283 6 O -0.985 6.985 7 O -0.981 6.981 8 C -0.681 4.681 9 C 0.008 3.992 10 C -0.562 4.562 11 H 0.065 0.935 12 C -0.160 4.160 13 N -0.528 5.528 14 Si 0.756 3.244 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.204 1.204 18 C -0.241 4.241 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.108 4.108 22 C -0.173 4.173 23 C 0.057 3.943 24 F -0.128 7.128 25 C -0.169 4.169 26 C -0.102 4.102 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.137 -1.062 -18.375 18.441 hybrid contribution -0.384 -1.157 0.888 1.508 sum 0.753 -2.219 -17.487 17.643 Atomic orbital electron populations 1.22494 0.92784 1.04174 1.04035 1.19890 0.95176 0.96134 0.81388 0.87762 1.55731 1.84399 1.19983 1.27250 1.04460 0.77481 0.74007 0.72332 1.93469 1.63263 1.61502 1.80295 1.93508 1.80911 1.60117 1.63568 1.29947 1.20059 1.12089 1.06029 1.18430 1.02835 0.86713 0.91255 1.20680 0.92835 1.28217 1.14479 0.93460 1.25433 0.95129 0.95820 0.99608 1.70029 0.99879 1.45427 1.37435 0.86043 0.77956 0.79525 0.80882 1.19596 1.20023 1.20408 1.23312 0.97078 1.01322 1.02351 1.22491 0.91678 1.02822 1.00420 1.20041 1.00220 0.94249 0.95502 1.21011 0.97895 0.93978 0.97894 1.21317 1.01674 1.01690 0.92651 1.18004 1.00770 0.91474 0.84050 1.91477 1.87054 1.82487 1.51769 1.21365 1.02519 0.92278 1.00785 1.21194 0.96035 1.01643 0.91346 0.91549 0.88933 0.91031 0.74444 0.85354 0.84615 0.92695 0.90037 0.88059 0.89123 0.91661 0.83849 0.83296 0.82709 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.46 71.98 0.68 -2.44 16 2 C 0.18 3.81 3.01 44.25 0.13 3.94 16 3 H 0.10 2.14 7.34 -2.39 -0.02 2.13 16 4 N -1.11 -29.96 5.31 -172.53 -0.92 -30.88 16 5 S 2.62 99.43 5.33 -56.49 -0.30 99.13 16 6 O -1.00 -40.56 17.39 -127.65 -2.22 -42.78 16 7 O -0.99 -46.94 17.10 -127.65 -2.18 -49.12 16 8 C -0.55 -20.92 4.88 71.98 0.35 -20.57 16 9 C 0.01 0.46 1.34 -52.93 -0.07 0.39 16 10 C -0.52 -28.46 7.66 25.60 0.20 -28.27 16 11 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 12 C 0.04 2.29 5.39 84.65 0.46 2.75 16 13 N -0.89 -47.77 12.93 21.44 0.28 -47.49 16 14 Si 0.93 43.51 29.55 68.60 2.03 45.53 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C -0.20 -8.35 9.96 30.62 0.30 -8.04 16 19 C -0.13 -5.77 9.44 30.62 0.29 -5.48 16 20 C -0.10 -1.88 4.96 -19.86 -0.10 -1.98 16 21 C -0.09 -1.64 9.16 22.26 0.20 -1.43 16 22 C -0.15 -2.77 10.03 22.31 0.22 -2.55 16 23 C 0.08 1.46 7.30 22.38 0.16 1.62 16 24 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 25 C -0.15 -2.49 10.03 22.31 0.22 -2.26 16 26 C -0.08 -1.38 9.67 22.26 0.22 -1.17 16 27 H 0.07 1.29 5.97 -2.38 -0.01 1.27 16 28 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.42 9.97 7.03 -96.74 -0.68 9.29 16 31 H 0.13 5.13 8.14 -2.39 -0.02 5.11 16 32 H 0.14 4.05 7.11 -2.39 -0.02 4.03 16 33 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.14 2.25 6.80 -2.91 -0.02 2.23 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.16 1.87 8.04 -2.91 -0.02 1.85 16 Total: -1.00 -69.32 359.98 1.10 -68.21 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.37 Total: 25.19 kcal Atomic # 6 Polarization: -68.77 SS G_CDS: 3.27 Total: -65.49 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -0.64 Total: -78.37 kcal Atomic # 8 Polarization: -87.50 SS G_CDS: -4.40 Total: -91.90 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 99.43 SS G_CDS: -0.30 Total: 99.13 kcal Total: -69.32 1.10 -68.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364986483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.138 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds