Wall clock time and date at job start Tue Mar 31 2020 15:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00065 * 2 1 4 4 C 1.38779 * 120.10649 * 359.72956 * 3 2 1 5 5 C 1.38210 * 119.99327 * 179.72016 * 4 3 2 6 6 C 1.38304 * 120.19822 * 0.57383 * 5 4 3 7 7 C 1.38243 * 120.21537 * 359.67893 * 6 5 4 8 8 C 1.38666 * 120.00498 * 0.04462 * 7 6 5 9 9 N 1.40066 * 120.10264 * 180.02562 * 8 7 6 10 10 C 1.46501 * 120.00164 * 106.36660 * 9 8 7 11 11 C 1.34780 * 119.99693 * 286.36863 * 9 8 7 12 12 O 1.21571 * 120.00006 * 188.44842 * 11 9 8 13 13 C 1.47855 * 120.00102 * 8.43996 * 11 9 8 14 14 C 1.39937 * 120.02798 * 321.18785 * 13 11 9 15 15 C 1.38328 * 120.35643 * 179.68986 * 14 13 11 16 16 C 1.37756 * 120.41213 * 0.60311 * 15 14 13 17 17 C 1.40755 * 120.04041 * 359.67303 * 16 15 14 18 18 C 1.41443 * 120.17561 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99968 * 26.41978 * 18 17 16 20 20 C 1.39940 * 120.00102 * 206.41397 * 18 17 16 21 21 N 1.30825 * 119.99862 * 11.87882 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 191.87376 * 20 18 17 23 23 H 1.48500 * 109.47066 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46950 * 119.99997 * 22 20 18 25 25 H 1.48493 * 109.47193 * 240.00271 * 22 20 18 26 26 C 1.39009 * 120.02514 * 141.45194 * 13 11 9 27 27 H 1.09000 * 109.47122 * 299.99696 * 1 2 3 28 28 H 1.08996 * 109.47480 * 59.99734 * 1 2 3 29 29 H 1.09006 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00308 * 359.97037 * 4 3 2 31 31 H 1.08000 * 119.89634 * 180.27203 * 5 4 3 32 32 H 1.08004 * 119.88936 * 179.69821 * 6 5 4 33 33 H 1.07995 * 119.99699 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47255 * 95.82756 * 10 9 8 35 35 H 1.09004 * 109.46831 * 215.82563 * 10 9 8 36 36 H 1.08993 * 109.46987 * 335.82004 * 10 9 8 37 37 H 1.07996 * 119.81788 * 359.97438 * 14 13 11 38 38 H 1.07994 * 119.79327 * 180.29777 * 15 14 13 39 39 H 1.07998 * 119.98150 * 179.69608 * 16 15 14 40 40 H 0.96995 * 120.00145 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.20144 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6652 -0.0057 5 6 1.5107 4.0112 0.0002 6 6 2.8327 4.4176 -0.0003 7 6 3.8487 3.4801 0.0001 8 6 3.5440 2.1273 0.0000 9 7 4.5718 1.1757 0.0009 10 6 4.8655 0.4158 1.2185 11 6 5.2906 0.9592 -1.1184 12 8 6.0757 0.0323 -1.1669 13 6 5.1242 1.8488 -2.2876 14 6 3.8531 2.3216 -2.6325 15 6 3.6904 3.1594 -3.7212 16 6 4.7755 3.5281 -4.4855 17 6 6.0610 3.0580 -4.1574 18 6 7.1772 3.4352 -4.9400 19 1 7.1618 4.3646 -5.4899 20 6 8.3016 2.6043 -5.0015 21 7 8.2395 1.3841 -4.5340 22 14 9.8909 3.2376 -5.7513 23 1 9.7011 4.6395 -6.2028 24 1 10.9722 3.1875 -4.7347 25 1 10.2631 2.3894 -6.9120 26 6 6.2296 2.2119 -3.0483 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.1637 2.3514 -0.0106 31 1 0.7210 4.7479 0.0002 32 1 3.0721 5.4707 -0.0006 33 1 4.8798 3.8013 0.0002 34 1 4.3485 -0.5430 1.1820 35 1 5.9399 0.2468 1.2910 36 1 4.5268 0.9784 2.0884 37 1 2.9951 2.0344 -2.0429 38 1 2.7060 3.5227 -3.9763 39 1 4.6399 4.1786 -5.3369 40 1 9.0186 0.8080 -4.5770 41 1 7.2119 1.8464 -2.7881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514527824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:58 Heat of formation + Delta-G solvation = 26.940695 kcal Electronic energy + Delta-G solvation = -25458.841966 eV Core-core repulsion = 22009.095597 eV Total energy + Delta-G solvation = -3449.746369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32161 -38.28634 -37.03546 -35.00628 -33.62944 -31.30180 -30.44467 -29.64833 -29.38835 -28.90274 -26.62568 -25.19083 -23.11235 -22.74297 -21.52474 -20.90356 -19.29810 -17.92119 -17.27020 -16.40426 -15.92125 -15.66024 -15.35281 -14.97720 -14.80372 -14.26667 -14.09413 -13.97064 -13.86647 -13.57158 -13.19602 -12.84133 -12.61483 -12.54238 -12.48814 -12.34229 -12.15136 -11.69428 -11.60648 -11.23826 -11.11688 -11.00502 -10.67257 -10.41860 -10.18943 -10.06141 -9.78853 -9.52875 -9.28884 -9.21380 -8.74326 -8.35542 -7.54454 -7.40241 -7.28958 -6.68291 -4.37398 1.24372 1.39324 1.51856 2.33328 2.43373 2.85676 3.10057 3.14800 3.18657 3.34062 3.65272 3.74451 3.95805 4.65721 4.86081 4.91363 4.93334 5.03633 5.12527 5.34843 5.47222 5.53400 5.59130 5.61921 5.73316 5.76315 5.95656 6.02569 6.20757 6.23349 6.43070 6.45491 6.54555 6.72253 6.78204 6.97862 7.04424 7.10445 7.28320 7.44468 7.71290 7.83162 7.93416 8.03382 8.22266 8.55967 8.77939 8.87918 8.89818 10.24208 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.004062 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.779691 B = 6891.719992 C = 7483.973207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.098 6.098 3 C -0.097 4.097 4 C -0.129 4.129 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.082 4.082 8 C 0.179 3.821 9 N -0.583 5.583 10 C 0.093 3.907 11 C 0.574 3.426 12 O -0.525 6.525 13 C -0.126 4.126 14 C -0.204 4.204 15 C -0.100 4.100 16 C -0.206 4.206 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.791 5.791 22 Si 0.910 3.090 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.096 4.096 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.282 0.718 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 2.463 11.331 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.145 5.855 3 C -0.211 4.211 4 C -0.153 4.153 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.103 4.103 8 C 0.082 3.918 9 N -0.314 5.314 10 C -0.049 4.049 11 C 0.367 3.633 12 O -0.401 6.401 13 C -0.130 4.130 14 C -0.224 4.224 15 C -0.119 4.119 16 C -0.226 4.226 17 C 0.096 3.904 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.147 4.147 21 N -0.416 5.416 22 Si 0.735 3.265 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.117 4.117 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.410 0.597 11.325 16.088 hybrid contribution -0.252 1.272 -0.473 1.381 sum -11.663 1.870 10.852 16.040 Atomic orbital electron populations 1.23708 0.96261 1.06809 1.05377 1.85858 1.04570 1.02843 1.92247 1.21976 0.95594 0.97012 1.06520 1.20949 0.97573 0.93038 1.03743 1.20991 0.96614 0.95002 0.99875 1.21026 0.92283 0.99506 1.00080 1.21273 1.00319 0.91224 0.97517 1.16869 0.85379 0.88704 1.00819 1.45380 1.34089 1.39593 1.12324 1.21606 1.02065 0.95922 0.85323 1.19071 0.78199 0.83957 0.82121 1.90729 1.36638 1.30615 1.82088 1.19386 0.95793 1.01405 0.96382 1.20755 0.95161 1.04758 1.01684 1.20389 0.96837 0.98760 0.95892 1.21125 0.92682 1.07460 1.01330 1.17543 0.91916 0.90465 0.90447 1.19585 0.98307 1.05756 1.25551 0.90295 1.25942 1.00395 0.94112 0.94243 1.69789 1.30959 1.05570 1.35318 0.86230 0.81058 0.80059 0.79196 1.18477 1.19756 1.19951 1.21587 0.97240 0.99460 0.93377 0.90029 0.89814 0.87661 0.85909 0.85820 0.85500 0.85193 0.92360 0.90746 0.91430 0.88085 0.89257 0.88798 0.90673 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.15 101.05 0.92 -0.45 16 2 S -0.10 -1.35 20.94 -107.50 -2.25 -3.60 16 3 C -0.10 -1.41 4.52 -38.90 -0.18 -1.58 16 4 C -0.13 -1.56 9.36 -39.39 -0.37 -1.93 16 5 C -0.10 -1.19 10.04 -39.57 -0.40 -1.59 16 6 C -0.11 -1.36 10.04 -39.56 -0.40 -1.76 16 7 C -0.08 -1.26 8.03 -39.42 -0.32 -1.58 16 8 C 0.18 2.93 2.85 -83.45 -0.24 2.69 16 9 N -0.58 -10.68 2.36 -121.69 -0.29 -10.97 16 10 C 0.09 1.40 9.70 59.85 0.58 1.98 16 11 C 0.57 13.19 7.29 -12.32 -0.09 13.10 16 12 O -0.53 -13.66 16.68 5.30 0.09 -13.57 16 13 C -0.13 -3.07 5.14 -105.04 -0.54 -3.61 16 14 C -0.20 -4.51 7.44 -38.91 -0.29 -4.80 16 15 C -0.10 -2.21 10.01 -39.72 -0.40 -2.61 16 16 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 17 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 18 C -0.46 -12.25 9.07 -37.73 -0.34 -12.60 16 19 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 20 C 0.07 1.81 5.25 -17.34 -0.09 1.72 16 21 N -0.79 -21.42 10.74 55.55 0.60 -20.82 16 22 Si 0.91 19.01 29.58 -169.99 -5.03 13.98 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.10 -2.59 8.25 -38.44 -0.32 -2.91 16 27 H 0.08 0.61 7.76 -51.92 -0.40 0.21 16 28 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 29 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.12 1.19 5.88 -52.48 -0.31 0.88 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.06 0.86 7.62 -51.93 -0.40 0.47 16 35 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 36 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 37 H 0.10 2.08 4.57 -52.49 -0.24 1.84 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.28 7.03 8.30 -40.82 -0.34 6.70 16 41 H 0.13 3.80 6.06 -52.49 -0.32 3.48 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -31.17 353.06 -9.96 -41.13 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.97 Total: 7.75 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.43 Total: -19.22 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.31 Total: -31.79 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.25 Total: -3.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.17 -9.96 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514527824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.068 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds