Wall clock time and date at job start Tue Mar 31 2020 15:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00065 * 2 1 4 4 C 1.38779 * 120.10649 * 359.72956 * 3 2 1 5 5 C 1.38210 * 119.99327 * 179.72016 * 4 3 2 6 6 C 1.38304 * 120.19822 * 0.57383 * 5 4 3 7 7 C 1.38243 * 120.21537 * 359.67893 * 6 5 4 8 8 C 1.38666 * 120.00498 * 0.04462 * 7 6 5 9 9 N 1.40066 * 120.10264 * 180.02562 * 8 7 6 10 10 C 1.46501 * 120.00164 * 106.36660 * 9 8 7 11 11 C 1.34780 * 119.99693 * 286.36863 * 9 8 7 12 12 O 1.21571 * 120.00006 * 188.44842 * 11 9 8 13 13 C 1.47855 * 120.00102 * 8.43996 * 11 9 8 14 14 C 1.39937 * 120.02798 * 321.18785 * 13 11 9 15 15 C 1.38328 * 120.35643 * 179.68986 * 14 13 11 16 16 C 1.37756 * 120.41213 * 0.60311 * 15 14 13 17 17 C 1.40755 * 120.04041 * 359.67303 * 16 15 14 18 18 C 1.41443 * 120.17561 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99968 * 26.41978 * 18 17 16 20 20 C 1.39940 * 120.00102 * 206.41397 * 18 17 16 21 21 N 1.30825 * 119.99862 * 11.87882 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 191.87376 * 20 18 17 23 23 H 1.48500 * 109.47066 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46950 * 119.99997 * 22 20 18 25 25 H 1.48493 * 109.47193 * 240.00271 * 22 20 18 26 26 C 1.39009 * 120.02514 * 141.45194 * 13 11 9 27 27 H 1.09000 * 109.47122 * 299.99696 * 1 2 3 28 28 H 1.08996 * 109.47480 * 59.99734 * 1 2 3 29 29 H 1.09006 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00308 * 359.97037 * 4 3 2 31 31 H 1.08000 * 119.89634 * 180.27203 * 5 4 3 32 32 H 1.08004 * 119.88936 * 179.69821 * 6 5 4 33 33 H 1.07995 * 119.99699 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47255 * 95.82756 * 10 9 8 35 35 H 1.09004 * 109.46831 * 215.82563 * 10 9 8 36 36 H 1.08993 * 109.46987 * 335.82004 * 10 9 8 37 37 H 1.07996 * 119.81788 * 359.97438 * 14 13 11 38 38 H 1.07994 * 119.79327 * 180.29777 * 15 14 13 39 39 H 1.07998 * 119.98150 * 179.69608 * 16 15 14 40 40 H 0.96995 * 120.00145 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.20144 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6652 -0.0057 5 6 1.5107 4.0112 0.0002 6 6 2.8327 4.4176 -0.0003 7 6 3.8487 3.4801 0.0001 8 6 3.5440 2.1273 0.0000 9 7 4.5718 1.1757 0.0009 10 6 4.8655 0.4158 1.2185 11 6 5.2906 0.9592 -1.1184 12 8 6.0757 0.0323 -1.1669 13 6 5.1242 1.8488 -2.2876 14 6 3.8531 2.3216 -2.6325 15 6 3.6904 3.1594 -3.7212 16 6 4.7755 3.5281 -4.4855 17 6 6.0610 3.0580 -4.1574 18 6 7.1772 3.4352 -4.9400 19 1 7.1618 4.3646 -5.4899 20 6 8.3016 2.6043 -5.0015 21 7 8.2395 1.3841 -4.5340 22 14 9.8909 3.2376 -5.7513 23 1 9.7011 4.6395 -6.2028 24 1 10.9722 3.1875 -4.7347 25 1 10.2631 2.3894 -6.9120 26 6 6.2296 2.2119 -3.0483 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.1637 2.3514 -0.0106 31 1 0.7210 4.7479 0.0002 32 1 3.0721 5.4707 -0.0006 33 1 4.8798 3.8013 0.0002 34 1 4.3485 -0.5430 1.1820 35 1 5.9399 0.2468 1.2910 36 1 4.5268 0.9784 2.0884 37 1 2.9951 2.0344 -2.0429 38 1 2.7060 3.5227 -3.9763 39 1 4.6399 4.1786 -5.3369 40 1 9.0186 0.8080 -4.5770 41 1 7.2119 1.8464 -2.7881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514527824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:57 Heat of formation + Delta-G solvation = 11.121583 kcal Electronic energy + Delta-G solvation = -25459.527935 eV Core-core repulsion = 22009.095597 eV Total energy + Delta-G solvation = -3450.432338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77843 -39.66343 -38.89234 -36.46982 -35.53692 -32.36848 -32.13216 -31.29860 -30.87679 -29.64622 -28.11461 -27.08972 -24.50278 -23.76954 -23.09995 -22.80087 -20.78961 -19.58455 -18.51334 -17.93570 -17.49850 -17.03307 -16.91492 -16.57745 -16.26783 -15.67222 -15.44477 -15.03560 -14.94094 -14.83340 -14.66379 -14.45134 -14.23682 -14.01474 -13.70848 -13.47409 -13.37738 -13.28901 -12.87556 -12.78333 -12.70769 -12.53011 -12.25534 -12.11298 -11.97837 -11.51329 -11.13714 -11.10479 -10.99311 -10.64300 -10.18414 -9.72680 -9.37249 -9.26249 -8.59079 -8.36140 -6.38516 0.18326 0.34378 0.46894 0.57030 1.02223 1.36675 1.46469 1.52982 1.55341 1.81370 1.96900 2.20056 2.70808 2.76231 3.62146 3.67177 3.88776 4.17694 4.29723 4.30643 4.31344 4.41646 4.43216 4.45108 4.55544 4.58002 4.63937 4.74581 4.85499 4.89453 4.94310 5.09425 5.20410 5.23800 5.27604 5.34656 5.51055 5.53325 5.58060 5.83811 5.90786 5.97351 6.06400 6.27487 6.37050 6.61605 6.90065 6.96022 7.07938 8.35436 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.004062 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.779691 B = 6891.719992 C = 7483.973207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.163 6.163 3 C -0.098 4.098 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.108 4.108 7 C -0.101 4.101 8 C 0.141 3.859 9 N -0.568 5.568 10 C 0.092 3.908 11 C 0.567 3.433 12 O -0.574 6.574 13 C -0.132 4.132 14 C -0.184 4.184 15 C -0.096 4.096 16 C -0.209 4.209 17 C 0.070 3.930 18 C -0.495 4.495 19 H 0.084 0.916 20 C 0.026 3.974 21 N -0.835 5.835 22 Si 0.986 3.014 23 H -0.250 1.250 24 H -0.270 1.270 25 H -0.267 1.267 26 C -0.130 4.130 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.284 0.716 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 4.422 11.739 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.079 5.921 3 C -0.212 4.212 4 C -0.148 4.148 5 C -0.109 4.109 6 C -0.129 4.129 7 C -0.122 4.122 8 C 0.046 3.954 9 N -0.297 5.297 10 C -0.049 4.049 11 C 0.359 3.641 12 O -0.454 6.454 13 C -0.135 4.135 14 C -0.203 4.203 15 C -0.114 4.114 16 C -0.228 4.228 17 C 0.068 3.932 18 C -0.525 4.525 19 H 0.103 0.897 20 C -0.188 4.188 21 N -0.462 5.462 22 Si 0.806 3.194 23 H -0.173 1.173 24 H -0.195 1.195 25 H -0.192 1.192 26 C -0.150 4.150 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.173 0.827 31 H 0.182 0.818 32 H 0.167 0.833 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.192 2.588 11.770 19.392 hybrid contribution 0.612 0.691 -0.449 1.026 sum -14.581 3.280 11.321 18.749 Atomic orbital electron populations 1.23795 0.91306 1.08350 1.06838 1.86127 1.10095 1.03522 1.92325 1.22005 0.95138 0.97493 1.06539 1.21394 0.98428 0.92880 1.02076 1.21464 0.96827 0.95540 0.97065 1.21333 0.92362 1.00077 0.99084 1.21274 1.00359 0.91566 0.99019 1.17108 0.85647 0.88519 1.04174 1.45219 1.33449 1.39505 1.11487 1.21758 1.01538 0.96451 0.85184 1.19015 0.78411 0.83352 0.83275 1.90686 1.38959 1.32529 1.83179 1.19607 0.96103 1.01205 0.96617 1.21019 0.94721 1.03325 1.01281 1.20788 0.98038 0.97739 0.94810 1.21388 0.92273 1.07182 1.01995 1.17875 0.93458 0.91205 0.90665 1.19883 0.99548 1.06428 1.26642 0.89747 1.26876 1.03746 0.93842 0.94301 1.69922 1.31997 1.07078 1.37166 0.85104 0.76171 0.79831 0.78269 1.17259 1.19500 1.19217 1.21375 0.96781 1.01724 0.95130 0.87882 0.88837 0.86165 0.82746 0.81782 0.83276 0.87261 0.91983 0.91924 0.88344 0.85877 0.85140 0.87217 0.90567 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.15 113.37 1.04 -0.84 16 2 S -0.16 -4.21 20.94 -56.49 -1.18 -5.39 16 3 C -0.10 -2.59 4.52 22.71 0.10 -2.49 16 4 C -0.12 -2.40 9.36 22.39 0.21 -2.19 16 5 C -0.09 -1.55 10.04 22.28 0.22 -1.33 16 6 C -0.11 -2.36 10.04 22.29 0.22 -2.14 16 7 C -0.10 -3.01 8.03 22.37 0.18 -2.83 16 8 C 0.14 4.51 2.85 38.24 0.11 4.62 16 9 N -0.57 -21.43 2.36 -657.17 -1.55 -22.99 16 10 C 0.09 2.87 9.70 127.77 1.24 4.11 16 11 C 0.57 27.55 7.29 86.79 0.63 28.18 16 12 O -0.57 -32.13 16.68 -3.94 -0.07 -32.19 16 13 C -0.13 -6.68 5.14 -20.14 -0.10 -6.79 16 14 C -0.18 -8.01 7.44 22.70 0.17 -7.84 16 15 C -0.10 -4.02 10.01 22.18 0.22 -3.80 16 16 C -0.21 -9.97 9.78 22.77 0.22 -9.74 16 17 C 0.07 3.88 5.57 -21.32 -0.12 3.76 16 18 C -0.50 -27.28 9.07 23.47 0.21 -27.07 16 19 H 0.08 4.36 7.87 -2.91 -0.02 4.34 16 20 C 0.03 1.36 5.25 85.26 0.45 1.81 16 21 N -0.84 -48.14 10.74 21.83 0.23 -47.90 16 22 Si 0.99 40.27 29.58 68.60 2.03 42.30 16 23 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 26 C -0.13 -7.41 8.25 23.01 0.19 -7.22 16 27 H 0.10 1.02 7.76 -2.39 -0.02 1.01 16 28 H 0.09 1.16 7.74 -2.39 -0.02 1.15 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.16 2.01 5.88 -2.91 -0.02 1.99 16 31 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.11 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.06 1.90 7.62 -2.39 -0.02 1.88 16 35 H 0.06 2.08 7.74 -2.38 -0.02 2.06 16 36 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 37 H 0.12 4.82 4.57 -2.91 -0.01 4.80 16 38 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 40 H 0.28 15.12 8.30 -92.71 -0.77 14.35 16 41 H 0.10 6.18 6.06 -2.91 -0.02 6.16 16 Total: -1.00 -74.13 353.06 5.71 -68.42 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 1.05 Total: 29.54 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 5.20 Total: -31.79 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.32 Total: -70.89 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.07 Total: -32.19 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -1.18 Total: -5.39 kcal Total: -74.13 5.71 -68.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514527824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.543 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds