Wall clock time and date at job start Tue Mar 31 2020 15:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81395 * 109.47420 * 2 1 4 4 C 1.76203 * 102.99757 * 179.97438 * 3 2 1 5 5 C 1.39038 * 120.18471 * 359.97438 * 4 3 2 6 6 C 1.37914 * 120.05488 * 179.97438 * 5 4 3 7 7 C 1.38648 * 120.44097 * 359.97438 * 6 5 4 8 8 C 1.37733 * 120.37245 * 359.97438 * 7 6 5 9 9 C 1.39760 * 119.92956 * 0.25806 * 8 7 6 10 10 C 1.47350 * 120.21473 * 179.74560 * 9 8 7 11 11 O 1.21623 * 119.99886 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00220 * 359.97438 * 10 9 8 13 13 C 1.39861 * 120.00031 * 174.89065 * 12 10 9 14 14 C 1.39306 * 119.95112 * 325.54227 * 13 12 10 15 15 C 1.38488 * 120.43003 * 179.76215 * 14 13 12 16 16 C 1.37688 * 120.31966 * 0.51770 * 15 14 13 17 17 C 1.40746 * 119.89185 * 359.73810 * 16 15 14 18 18 C 1.41404 * 120.20867 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00391 * 25.13788 * 18 17 16 20 20 C 1.39933 * 119.99822 * 205.13221 * 18 17 16 21 21 N 1.30837 * 120.00043 * 16.80088 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 196.79992 * 20 18 17 23 23 H 1.48499 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46825 * 119.99952 * 22 20 18 25 25 H 1.48497 * 109.47202 * 240.00112 * 22 20 18 26 26 C 1.38269 * 119.94979 * 145.81867 * 13 12 10 27 27 H 1.09000 * 109.47461 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46918 * 300.00250 * 1 2 3 29 29 H 1.08998 * 109.46756 * 59.99685 * 1 2 3 30 30 H 1.08998 * 109.46894 * 239.99331 * 2 1 3 31 31 H 1.09006 * 109.46459 * 120.00232 * 2 1 3 32 32 H 1.07994 * 119.97347 * 359.96149 * 5 4 3 33 33 H 1.08004 * 119.77649 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.81193 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.03504 * 179.97438 * 8 7 6 36 36 H 0.96995 * 120.00036 * 354.89107 * 12 10 9 37 37 H 1.08000 * 119.78472 * 0.02562 * 14 13 12 38 38 H 1.07998 * 119.83887 * 180.25512 * 15 14 13 39 39 H 1.08001 * 120.05108 * 179.76260 * 16 15 14 40 40 H 0.97004 * 119.99605 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.15905 * 359.95785 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5114 0.0008 5 6 4.4446 0.2384 0.0017 6 6 5.8153 0.0859 0.0018 7 6 6.6456 1.1963 0.0004 8 6 6.1110 2.4656 -0.0017 9 6 4.7241 2.6381 0.0032 10 6 4.1454 3.9933 0.0067 11 8 2.9379 4.1388 0.0113 12 7 4.9541 5.0714 0.0058 13 6 4.4083 6.3548 -0.0988 14 6 3.2697 6.5655 -0.8733 15 6 2.7182 7.8313 -0.9798 16 6 3.2960 8.8983 -0.3291 17 6 4.4497 8.7018 0.4528 18 6 5.0483 9.7927 1.1244 19 1 4.4551 10.6556 1.3886 20 6 6.4095 9.7542 1.4468 21 7 7.1968 8.8905 0.8587 22 14 7.1023 10.9360 2.7167 23 1 6.0131 11.8046 3.2308 24 1 7.6920 10.1649 3.8406 25 1 8.1525 11.7775 2.0889 26 6 5.0029 7.4138 0.5622 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8050 -0.6318 0.0026 33 1 6.2447 -0.9051 0.0021 34 1 7.7175 1.0651 0.0000 35 1 6.7628 3.3267 -0.0023 36 1 5.9146 4.9572 0.0776 37 1 2.8118 5.7355 -1.3907 38 1 1.8330 7.9830 -1.5796 39 1 2.8645 9.8843 -0.4183 40 1 8.1405 8.8641 1.0819 41 1 5.8878 7.2523 1.1599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533223919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:38 Heat of formation + Delta-G solvation = 10.350855 kcal Electronic energy + Delta-G solvation = -24073.593484 eV Core-core repulsion = 20623.127725 eV Total energy + Delta-G solvation = -3450.465759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15495 -38.48906 -37.04957 -34.35071 -33.34449 -33.05075 -31.38203 -31.16484 -29.51578 -28.25334 -25.24744 -24.54391 -23.40476 -22.85572 -21.30249 -20.94418 -19.59852 -18.23410 -17.40404 -16.88902 -15.94331 -15.59114 -15.31405 -15.04859 -14.78173 -14.74095 -14.60033 -14.42402 -14.36434 -13.65670 -13.19458 -12.82766 -12.68495 -12.45070 -12.42103 -12.29893 -11.78018 -11.65844 -11.62895 -11.25248 -11.12238 -11.11415 -10.76235 -10.69961 -10.38758 -9.87644 -9.84028 -9.71255 -9.32288 -9.15884 -9.09751 -8.80929 -7.37954 -7.36494 -6.98245 -6.68088 -4.36005 0.73782 1.08667 1.53628 2.51744 2.65648 2.85676 3.07824 3.13484 3.17646 3.27424 3.64038 3.86306 3.94243 4.59535 4.64870 4.72246 4.72611 4.78410 4.88862 5.11463 5.23056 5.25515 5.44914 5.52160 5.60379 5.65235 5.71147 5.89025 5.98100 6.07526 6.24803 6.30093 6.62199 6.66123 6.70017 6.90377 7.06242 7.08044 7.26350 7.61789 7.69301 7.94488 8.04263 8.15565 8.32755 8.54894 8.73858 8.90000 8.96685 10.19659 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.003126 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.117090 B = 8956.098325 C =10179.548978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.171 4.171 3 S 0.008 5.992 4 C -0.046 4.046 5 C -0.147 4.147 6 C -0.078 4.078 7 C -0.138 4.138 8 C -0.065 4.065 9 C -0.121 4.121 10 C 0.543 3.457 11 O -0.495 6.495 12 N -0.656 5.656 13 C 0.145 3.855 14 C -0.224 4.224 15 C -0.086 4.086 16 C -0.227 4.227 17 C 0.120 3.880 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.800 5.800 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.180 4.180 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.278 0.722 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -18.341 -0.997 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.319 4.319 3 S 0.255 5.745 4 C -0.162 4.162 5 C -0.172 4.172 6 C -0.098 4.098 7 C -0.160 4.160 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.330 3.670 11 O -0.373 6.373 12 N -0.300 5.300 13 C 0.054 3.946 14 C -0.245 4.245 15 C -0.104 4.104 16 C -0.247 4.247 17 C 0.117 3.883 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.140 4.140 21 N -0.426 5.426 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.201 1.201 26 C -0.202 4.202 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.384 -17.362 -1.022 17.555 hybrid contribution 1.976 -0.795 0.566 2.204 sum -0.407 -18.158 -0.456 18.168 Atomic orbital electron populations 1.21407 0.92065 1.02294 1.03298 1.24057 1.01017 1.02148 1.04690 1.87343 0.94557 1.03643 1.88957 1.22207 0.98911 0.95070 0.99964 1.21098 0.95963 0.95159 1.04973 1.21185 0.92991 0.99001 0.96632 1.21065 1.00178 0.92080 1.02631 1.21346 0.93272 0.98167 0.95769 1.19687 0.93436 0.92374 1.07635 1.18109 0.86932 0.84092 0.77854 1.90714 1.13559 1.84671 1.48325 1.43321 1.09874 1.05059 1.71735 1.17583 0.96211 0.82180 0.98670 1.20309 1.00260 0.96810 1.07112 1.20416 0.98074 0.92809 0.99141 1.21050 1.01869 0.96979 1.04776 1.17360 0.90222 0.91877 0.88859 1.19561 0.93801 1.02885 1.32986 0.90331 1.25874 0.97191 0.95843 0.95123 1.69827 1.05714 1.32475 1.34602 0.86290 0.79291 0.80551 0.80751 1.18426 1.19811 1.20065 1.21071 1.03866 0.91301 1.03917 0.91439 0.91636 0.91656 0.90104 0.90094 0.85449 0.85507 0.85229 0.84953 0.76351 0.87984 0.88997 0.88850 0.91140 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.92 37.16 0.37 -0.79 16 2 C -0.17 -1.70 5.06 37.16 0.19 -1.52 16 3 S 0.01 0.12 18.83 -107.50 -2.02 -1.91 16 4 C -0.05 -0.67 6.16 -38.45 -0.24 -0.90 16 5 C -0.15 -1.65 9.36 -39.40 -0.37 -2.01 16 6 C -0.08 -0.75 10.02 -39.55 -0.40 -1.14 16 7 C -0.14 -1.39 10.02 -39.61 -0.40 -1.79 16 8 C -0.07 -0.81 9.53 -39.20 -0.37 -1.19 16 9 C -0.12 -1.88 5.89 -104.79 -0.62 -2.50 16 10 C 0.54 10.45 7.47 -12.56 -0.09 10.35 16 11 O -0.50 -10.87 11.51 5.26 0.06 -10.81 16 12 N -0.66 -12.92 5.28 -10.90 -0.06 -12.98 16 13 C 0.15 3.45 6.25 -83.79 -0.52 2.93 16 14 C -0.22 -5.41 8.66 -39.09 -0.34 -5.75 16 15 C -0.09 -2.03 10.02 -39.69 -0.40 -2.42 16 16 C -0.23 -5.69 9.79 -38.84 -0.38 -6.07 16 17 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 18 C -0.46 -12.22 9.05 -37.74 -0.34 -12.56 16 19 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 20 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 21 N -0.80 -20.07 10.94 55.55 0.61 -19.46 16 22 Si 0.91 18.54 29.59 -169.99 -5.03 13.50 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.18 -4.62 8.60 -38.68 -0.33 -4.95 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.72 7.76 -51.93 -0.40 0.31 16 31 H 0.08 0.72 7.75 -51.92 -0.40 0.32 16 32 H 0.13 1.14 5.90 -52.49 -0.31 0.83 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.44 6.42 -52.49 -0.34 1.10 16 36 H 0.40 6.70 6.86 -40.82 -0.28 6.42 16 37 H 0.10 2.44 6.47 -52.49 -0.34 2.10 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 41 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -30.35 354.16 -10.94 -41.28 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.90 Total: 10.93 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -4.93 Total: -25.90 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.55 Total: -32.44 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.06 Total: -10.81 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.02 Total: -1.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.35 -10.94 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.636 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds