Wall clock time and date at job start Tue Mar 31 2020 15:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81395 * 109.47420 * 2 1 4 4 C 1.76203 * 102.99757 * 179.97438 * 3 2 1 5 5 C 1.39038 * 120.18471 * 359.97438 * 4 3 2 6 6 C 1.37914 * 120.05488 * 179.97438 * 5 4 3 7 7 C 1.38648 * 120.44097 * 359.97438 * 6 5 4 8 8 C 1.37733 * 120.37245 * 359.97438 * 7 6 5 9 9 C 1.39760 * 119.92956 * 0.25806 * 8 7 6 10 10 C 1.47350 * 120.21473 * 179.74560 * 9 8 7 11 11 O 1.21623 * 119.99886 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00220 * 359.97438 * 10 9 8 13 13 C 1.39861 * 120.00031 * 174.89065 * 12 10 9 14 14 C 1.39306 * 119.95112 * 325.54227 * 13 12 10 15 15 C 1.38488 * 120.43003 * 179.76215 * 14 13 12 16 16 C 1.37688 * 120.31966 * 0.51770 * 15 14 13 17 17 C 1.40746 * 119.89185 * 359.73810 * 16 15 14 18 18 C 1.41404 * 120.20867 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00391 * 25.13788 * 18 17 16 20 20 C 1.39933 * 119.99822 * 205.13221 * 18 17 16 21 21 N 1.30837 * 120.00043 * 16.80088 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 196.79992 * 20 18 17 23 23 H 1.48499 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46825 * 119.99952 * 22 20 18 25 25 H 1.48497 * 109.47202 * 240.00112 * 22 20 18 26 26 C 1.38269 * 119.94979 * 145.81867 * 13 12 10 27 27 H 1.09000 * 109.47461 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46918 * 300.00250 * 1 2 3 29 29 H 1.08998 * 109.46756 * 59.99685 * 1 2 3 30 30 H 1.08998 * 109.46894 * 239.99331 * 2 1 3 31 31 H 1.09006 * 109.46459 * 120.00232 * 2 1 3 32 32 H 1.07994 * 119.97347 * 359.96149 * 5 4 3 33 33 H 1.08004 * 119.77649 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.81193 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.03504 * 179.97438 * 8 7 6 36 36 H 0.96995 * 120.00036 * 354.89107 * 12 10 9 37 37 H 1.08000 * 119.78472 * 0.02562 * 14 13 12 38 38 H 1.07998 * 119.83887 * 180.25512 * 15 14 13 39 39 H 1.08001 * 120.05108 * 179.76260 * 16 15 14 40 40 H 0.97004 * 119.99605 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.15905 * 359.95785 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5114 0.0008 5 6 4.4446 0.2384 0.0017 6 6 5.8153 0.0859 0.0018 7 6 6.6456 1.1963 0.0004 8 6 6.1110 2.4656 -0.0017 9 6 4.7241 2.6381 0.0032 10 6 4.1454 3.9933 0.0067 11 8 2.9379 4.1388 0.0113 12 7 4.9541 5.0714 0.0058 13 6 4.4083 6.3548 -0.0988 14 6 3.2697 6.5655 -0.8733 15 6 2.7182 7.8313 -0.9798 16 6 3.2960 8.8983 -0.3291 17 6 4.4497 8.7018 0.4528 18 6 5.0483 9.7927 1.1244 19 1 4.4551 10.6556 1.3886 20 6 6.4095 9.7542 1.4468 21 7 7.1968 8.8905 0.8587 22 14 7.1023 10.9360 2.7167 23 1 6.0131 11.8046 3.2308 24 1 7.6920 10.1649 3.8406 25 1 8.1525 11.7775 2.0889 26 6 5.0029 7.4138 0.5622 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8050 -0.6318 0.0026 33 1 6.2447 -0.9051 0.0021 34 1 7.7175 1.0651 0.0000 35 1 6.7628 3.3267 -0.0023 36 1 5.9146 4.9572 0.0776 37 1 2.8118 5.7355 -1.3907 38 1 1.8330 7.9830 -1.5796 39 1 2.8645 9.8843 -0.4183 40 1 8.1405 8.8641 1.0819 41 1 5.8878 7.2523 1.1599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533223919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:38 Heat of formation + Delta-G solvation = -4.896086 kcal Electronic energy + Delta-G solvation = -24074.254641 eV Core-core repulsion = 20623.127725 eV Total energy + Delta-G solvation = -3451.126916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54531 -39.74242 -38.72402 -36.06891 -35.15855 -33.83201 -32.48896 -32.07149 -31.44348 -29.96964 -27.18956 -25.58724 -24.42277 -23.76841 -23.12663 -22.45909 -21.19406 -19.47093 -19.21507 -17.96521 -17.61439 -16.86946 -16.56956 -16.54470 -16.13993 -16.07604 -15.71688 -15.66826 -15.25882 -14.97952 -14.85216 -14.46152 -14.17923 -13.84083 -13.46947 -13.26440 -13.19383 -13.07496 -12.82035 -12.61984 -12.57611 -12.40228 -12.34743 -11.98822 -11.90196 -11.58656 -11.49713 -11.12418 -10.86486 -10.73945 -10.17917 -10.10141 -9.33804 -8.89031 -8.57986 -8.38363 -6.35624 -0.29936 0.20489 0.56409 0.88793 1.04129 1.40408 1.50502 1.55072 1.59414 1.89386 2.19648 2.22775 2.69310 2.80376 3.60922 3.70412 3.75211 4.00148 4.02683 4.06587 4.28064 4.36538 4.44264 4.52292 4.54866 4.71429 4.80533 4.83770 4.84540 4.88126 5.04893 5.10696 5.14167 5.20037 5.21488 5.25749 5.36093 5.39753 5.76909 5.81154 5.84634 6.02183 6.08034 6.32258 6.54388 6.70534 6.93454 6.96747 7.20320 8.34579 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.003126 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.117090 B = 8956.098325 C =10179.548978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 S -0.084 6.084 4 C -0.054 4.054 5 C -0.147 4.147 6 C -0.062 4.062 7 C -0.131 4.131 8 C -0.071 4.071 9 C -0.153 4.153 10 C 0.538 3.462 11 O -0.530 6.530 12 N -0.656 5.656 13 C 0.152 3.848 14 C -0.239 4.239 15 C -0.083 4.083 16 C -0.248 4.248 17 C 0.093 3.907 18 C -0.497 4.497 19 H 0.076 0.924 20 C 0.038 3.962 21 N -0.821 5.821 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.264 1.264 25 H -0.264 1.264 26 C -0.201 4.201 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.413 0.587 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.289 0.711 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -21.124 -0.553 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.293 4.293 3 S 0.163 5.837 4 C -0.169 4.169 5 C -0.171 4.171 6 C -0.082 4.082 7 C -0.152 4.152 8 C -0.091 4.091 9 C -0.163 4.163 10 C 0.328 3.672 11 O -0.409 6.409 12 N -0.301 5.301 13 C 0.059 3.941 14 C -0.260 4.260 15 C -0.102 4.102 16 C -0.267 4.267 17 C 0.090 3.910 18 C -0.526 4.526 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.189 1.189 26 C -0.223 4.223 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.183 0.817 35 H 0.158 0.842 36 H 0.251 0.749 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.569 -20.175 -0.594 20.192 hybrid contribution 1.429 -0.137 0.381 1.486 sum 0.860 -20.313 -0.212 20.332 Atomic orbital electron populations 1.21462 0.91312 1.03821 1.02517 1.24020 1.01333 0.97858 1.06120 1.87533 0.97138 1.09524 1.89551 1.22268 0.97631 0.96094 1.00905 1.21466 0.97286 0.94379 1.04010 1.21728 0.92095 1.00834 0.93505 1.21511 1.02129 0.90931 1.00590 1.21546 0.91929 1.00012 0.95647 1.19488 0.94997 0.90395 1.11430 1.18789 0.86564 0.85306 0.76528 1.90706 1.15037 1.85657 1.49498 1.43294 1.10683 1.03969 1.72138 1.17650 0.95648 0.83569 0.97206 1.20450 1.00805 0.97009 1.07700 1.20714 0.98573 0.92264 0.98624 1.21219 1.02146 0.97868 1.05514 1.17764 0.91127 0.92651 0.89465 1.19801 0.95067 1.03109 1.34631 0.90589 1.26712 0.96846 0.97665 0.96532 1.69858 1.06487 1.33317 1.35043 0.85165 0.78456 0.78206 0.77908 1.18519 1.18856 1.18899 1.21009 1.04332 0.91726 1.05229 0.88462 0.92542 0.92472 0.88488 0.88555 0.83014 0.81214 0.81727 0.84213 0.74949 0.88182 0.86303 0.87951 0.90033 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.92 71.98 0.71 -1.43 16 2 C -0.15 -2.65 5.06 71.98 0.36 -2.28 16 3 S -0.08 -2.57 18.83 -56.49 -1.06 -3.63 16 4 C -0.05 -1.52 6.16 23.00 0.14 -1.38 16 5 C -0.15 -2.83 9.36 22.38 0.21 -2.62 16 6 C -0.06 -0.89 10.02 22.29 0.22 -0.67 16 7 C -0.13 -2.13 10.02 22.25 0.22 -1.91 16 8 C -0.07 -1.68 9.53 22.52 0.21 -1.46 16 9 C -0.15 -4.81 5.89 -19.97 -0.12 -4.92 16 10 C 0.54 21.70 7.47 86.64 0.65 22.35 16 11 O -0.53 -24.68 11.51 -4.11 -0.05 -24.73 16 12 N -0.66 -26.98 5.28 -306.65 -1.62 -28.60 16 13 C 0.15 7.58 6.25 38.12 0.24 7.82 16 14 C -0.24 -12.01 8.66 22.59 0.20 -11.82 16 15 C -0.08 -4.06 10.02 22.20 0.22 -3.84 16 16 C -0.25 -12.89 9.79 22.75 0.22 -12.67 16 17 C 0.09 5.18 5.57 -21.31 -0.12 5.06 16 18 C -0.50 -27.11 9.05 23.46 0.21 -26.90 16 19 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 20 C 0.04 1.88 5.16 85.25 0.44 2.32 16 21 N -0.82 -41.71 10.94 21.82 0.24 -41.48 16 22 Si 0.98 37.97 29.59 68.60 2.03 40.00 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 C -0.20 -10.80 8.60 22.86 0.20 -10.61 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.46 7.76 -2.39 -0.02 1.44 16 31 H 0.10 1.46 7.75 -2.39 -0.02 1.44 16 32 H 0.15 2.10 5.90 -2.91 -0.02 2.08 16 33 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.14 2.93 6.42 -2.91 -0.02 2.91 16 36 H 0.41 14.35 6.86 -92.71 -0.64 13.72 16 37 H 0.10 5.03 6.47 -2.91 -0.02 5.01 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 41 H 0.11 6.17 6.17 -2.91 -0.02 6.15 16 Total: -1.00 -70.43 354.16 4.20 -66.23 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.43 Total: 37.16 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 4.23 Total: -44.96 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.38 Total: -70.07 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -1.06 Total: -3.63 kcal Total: -70.43 4.20 -66.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.332 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds