Wall clock time and date at job start Tue Mar 31 2020 15:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 119.99609 * 2 1 4 4 C 1.46753 * 120.00515 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.21569 * 5.52550 * 4 2 1 6 6 C 1.37878 * 119.86405 * 179.97438 * 5 4 2 7 7 F 1.35099 * 119.83717 * 180.02562 * 6 5 4 8 8 C 1.38832 * 120.32538 * 0.02562 * 6 5 4 9 9 C 1.38003 * 120.44975 * 359.67145 * 8 6 5 10 10 C 1.38845 * 120.12224 * 0.61143 * 9 8 6 11 11 N 1.39129 * 120.16432 * 179.69347 * 10 9 8 12 12 C 1.34778 * 120.00317 * 35.54728 * 11 10 9 13 13 O 1.21558 * 119.99752 * 355.54979 * 12 11 10 14 14 C 1.47834 * 120.00645 * 175.54276 * 12 11 10 15 15 C 1.39947 * 120.02339 * 359.73011 * 14 12 11 16 16 C 1.38328 * 120.35215 * 179.69048 * 15 14 12 17 17 C 1.37756 * 120.41409 * 0.60375 * 16 15 14 18 18 C 1.40748 * 120.04426 * 359.67693 * 17 16 15 19 19 C 1.41439 * 120.17587 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00061 * 148.78077 * 19 18 17 21 21 C 1.39934 * 120.00144 * 328.77497 * 19 18 17 22 22 N 1.30827 * 120.00073 * 167.75241 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 347.75962 * 21 19 18 24 24 H 1.48500 * 109.47028 * 92.58533 * 23 21 19 25 25 H 1.48505 * 109.47140 * 212.58334 * 23 21 19 26 26 H 1.48501 * 109.47012 * 332.58307 * 23 21 19 27 27 C 1.39017 * 120.03220 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.47537 * 270.00173 * 1 2 3 29 29 H 1.08999 * 109.47193 * 30.01106 * 1 2 3 30 30 H 1.09008 * 109.46667 * 150.00853 * 1 2 3 31 31 H 1.07996 * 120.06569 * 359.95538 * 5 4 2 32 32 H 1.08003 * 119.77718 * 179.97438 * 8 6 5 33 33 H 1.07996 * 119.93885 * 180.30016 * 9 8 6 34 34 H 0.96999 * 120.00187 * 215.82300 * 11 10 9 35 35 H 1.07993 * 119.82395 * 359.97367 * 15 14 12 36 36 H 1.08001 * 119.79145 * 180.28092 * 16 15 14 37 37 H 1.07999 * 119.97729 * 179.69269 * 17 16 15 38 38 H 0.97002 * 120.00079 * 180.02562 * 22 21 19 39 39 H 1.07998 * 120.20120 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2409 -1.2709 0.0006 5 6 1.5503 -2.4834 -0.1154 6 6 2.2471 -3.6732 -0.1146 7 9 1.5803 -4.8427 -0.2270 8 6 3.6306 -3.6751 0.0012 9 6 4.3250 -2.4875 0.1100 10 6 3.6416 -1.2789 0.1171 11 7 4.3403 -0.0814 0.2332 12 6 5.5501 0.0518 -0.3458 13 8 6.0666 -0.8987 -0.9002 14 6 6.2489 1.3540 -0.3070 15 6 5.6523 2.4503 0.3260 16 6 6.3029 3.6702 0.3719 17 6 7.5395 3.8235 -0.2152 18 6 8.1528 2.7339 -0.8615 19 6 9.4227 2.8881 -1.4648 20 1 10.1064 2.0529 -1.5052 21 6 9.7933 4.1226 -2.0096 22 7 11.0378 4.3407 -2.3489 23 14 8.5111 5.4592 -2.2520 24 1 8.4805 6.3387 -1.0559 25 1 8.8568 6.2653 -3.4504 26 1 7.1766 4.8362 -2.4427 27 6 7.4965 1.4922 -0.9045 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5137 31 1 0.4741 -2.4867 -0.2050 32 1 4.1675 -4.6123 0.0013 33 1 5.4016 -2.4985 0.1948 34 1 3.9586 0.6563 0.7341 35 1 4.6807 2.3421 0.7850 36 1 5.8360 4.5090 0.8668 37 1 8.0390 4.7804 -0.1794 38 1 11.2948 5.1966 -2.7261 39 1 7.9589 0.6501 -1.3979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538267934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:48 Heat of formation + Delta-G solvation = -64.346866 kcal Electronic energy + Delta-G solvation = -26322.229896 eV Core-core repulsion = 22302.311825 eV Total energy + Delta-G solvation = -4019.918071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.07690 -41.00155 -39.37033 -38.17052 -37.32263 -34.69099 -33.70012 -32.45369 -31.02364 -30.20079 -29.69863 -28.98477 -25.32510 -24.44761 -23.93724 -22.18646 -20.81416 -20.50326 -20.11529 -18.33978 -17.75363 -17.41330 -16.75012 -16.31077 -15.90878 -15.62090 -15.56863 -15.18104 -14.98539 -14.73317 -14.70660 -14.40236 -14.07194 -13.72727 -13.25684 -13.13728 -12.87161 -12.80110 -12.69259 -12.49829 -12.33764 -12.08919 -11.80650 -11.68096 -11.14983 -10.80659 -10.60459 -10.45973 -10.03282 -9.94067 -9.76747 -9.59790 -9.39127 -9.21886 -8.25989 -7.92953 -7.81009 -7.00648 -4.60474 0.24741 0.87750 1.77148 2.07462 2.46393 3.02554 3.12941 3.15447 3.19564 3.26775 3.55706 3.65943 3.90345 4.03455 4.34883 4.43819 4.58817 4.77863 4.95143 5.00738 5.07569 5.12022 5.25387 5.34144 5.47783 5.60711 5.68903 5.79948 5.94883 5.97822 6.02704 6.27394 6.29241 6.57626 6.58573 6.72851 6.91177 7.12459 7.21558 7.30618 7.41501 7.55169 7.68410 7.87425 8.23766 8.35389 8.46126 8.67116 10.01629 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.002996 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.345983 B = 9342.946487 C =10326.161045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.396 3.604 3 O -0.451 6.451 4 C -0.188 4.188 5 C -0.089 4.089 6 C 0.059 3.941 7 F -0.140 7.140 8 C -0.097 4.097 9 C -0.112 4.112 10 C 0.215 3.785 11 N -0.663 5.663 12 C 0.567 3.433 13 O -0.527 6.527 14 C -0.113 4.113 15 C -0.206 4.206 16 C -0.083 4.083 17 C -0.217 4.217 18 C 0.080 3.920 19 C -0.441 4.441 20 H 0.094 0.906 21 C 0.081 3.919 22 N -0.808 5.808 23 Si 0.912 3.088 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.242 1.242 27 C -0.129 4.129 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.422 0.578 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.287 0.713 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 -9.619 5.856 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.275 3.725 3 O -0.326 6.326 4 C -0.192 4.192 5 C -0.108 4.108 6 C 0.039 3.961 7 F -0.119 7.119 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.116 3.884 11 N -0.311 5.311 12 C 0.360 3.640 13 O -0.404 6.404 14 C -0.116 4.116 15 C -0.226 4.226 16 C -0.101 4.101 17 C -0.236 4.236 18 C 0.077 3.923 19 C -0.469 4.469 20 H 0.112 0.888 21 C -0.137 4.137 22 N -0.432 5.432 23 Si 0.739 3.261 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.166 1.166 27 C -0.149 4.149 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.266 0.734 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.395 -9.542 5.325 21.396 hybrid contribution -0.775 0.704 0.031 1.047 sum -19.169 -8.838 5.356 21.778 Atomic orbital electron populations 1.22216 0.93270 1.05094 1.04890 1.22274 0.91882 0.87054 0.71300 1.90525 1.71612 1.34050 1.36433 1.20152 0.92654 0.95197 1.11240 1.21170 1.00650 0.89839 0.99188 1.17446 0.90328 0.81318 1.06988 1.91503 1.80602 1.45861 1.93930 1.21318 0.92139 0.99797 0.98448 1.21333 1.02276 0.89444 1.00151 1.18038 0.89685 0.87104 0.93594 1.43788 1.19516 1.14593 1.53174 1.19046 0.79301 0.89443 0.76216 1.90694 1.65474 1.40691 1.43492 1.19251 0.96749 0.91094 1.04480 1.20478 1.00137 0.93539 1.08452 1.20519 0.94865 0.96043 0.98714 1.21241 0.97927 0.99503 1.04930 1.17701 0.92706 0.90932 0.90934 1.19522 0.98257 0.97903 1.31245 0.88769 1.26155 0.95924 0.99020 0.92651 1.69642 1.17547 1.25129 1.30931 0.86313 0.82703 0.79702 0.77363 1.19558 1.21792 1.16575 1.21283 0.93211 0.98617 1.01833 0.88247 0.89107 0.89543 0.83523 0.83900 0.82399 0.73430 0.88151 0.88014 0.87714 0.90272 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 9.86 36.00 0.36 -0.89 16 2 C 0.40 4.28 7.19 -30.87 -0.22 4.06 16 3 O -0.45 -6.43 14.75 5.54 0.08 -6.35 16 4 C -0.19 -2.14 5.88 -104.91 -0.62 -2.76 16 5 C -0.09 -0.81 9.36 -39.04 -0.37 -1.18 16 6 C 0.06 0.60 7.28 -39.49 -0.29 0.32 16 7 F -0.14 -1.43 17.26 2.25 0.04 -1.39 16 8 C -0.10 -1.04 10.00 -39.45 -0.39 -1.44 16 9 C -0.11 -1.48 8.67 -39.44 -0.34 -1.82 16 10 C 0.21 3.02 6.30 -83.45 -0.53 2.49 16 11 N -0.66 -10.63 4.46 -10.50 -0.05 -10.67 16 12 C 0.57 11.00 7.61 -12.33 -0.09 10.91 16 13 O -0.53 -11.02 13.79 5.31 0.07 -10.95 16 14 C -0.11 -2.40 5.87 -105.04 -0.62 -3.01 16 15 C -0.21 -4.09 9.55 -38.91 -0.37 -4.46 16 16 C -0.08 -1.71 10.01 -39.72 -0.40 -2.11 16 17 C -0.22 -5.01 6.99 -38.81 -0.27 -5.29 16 18 C 0.08 2.00 5.13 -106.87 -0.55 1.45 16 19 C -0.44 -11.74 9.60 -37.73 -0.36 -12.10 16 20 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 21 C 0.08 2.10 5.47 -17.34 -0.09 2.00 16 22 N -0.81 -21.28 13.93 55.55 0.77 -20.51 16 23 Si 0.91 20.39 24.40 -169.99 -4.15 16.24 16 24 H -0.27 -5.76 6.67 56.52 0.38 -5.38 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.24 -5.57 6.67 56.52 0.38 -5.19 16 27 C -0.13 -3.05 9.34 -38.44 -0.36 -3.41 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.37 6.28 -51.92 -0.33 0.05 16 31 H 0.15 0.86 6.25 -52.49 -0.33 0.53 16 32 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.16 2.30 6.25 -52.49 -0.33 1.97 16 34 H 0.42 6.41 4.66 -40.82 -0.19 6.22 16 35 H 0.10 1.72 6.39 -52.49 -0.34 1.39 16 36 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 2.40 4.40 -52.49 -0.23 2.16 16 38 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.12 2.79 7.64 -52.49 -0.40 2.38 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -29.43 333.77 -7.15 -36.58 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.44 Total: 9.27 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -5.51 Total: -17.23 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.73 Total: -31.18 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.15 Total: -17.30 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.15 Total: 16.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.43 -7.15 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538267934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.771 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds