Wall clock time and date at job start Tue Mar 31 2020 15:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 119.99609 * 2 1 4 4 C 1.46753 * 120.00515 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.21569 * 5.52550 * 4 2 1 6 6 C 1.37878 * 119.86405 * 179.97438 * 5 4 2 7 7 F 1.35099 * 119.83717 * 180.02562 * 6 5 4 8 8 C 1.38832 * 120.32538 * 0.02562 * 6 5 4 9 9 C 1.38003 * 120.44975 * 359.67145 * 8 6 5 10 10 C 1.38845 * 120.12224 * 0.61143 * 9 8 6 11 11 N 1.39129 * 120.16432 * 179.69347 * 10 9 8 12 12 C 1.34778 * 120.00317 * 35.54728 * 11 10 9 13 13 O 1.21558 * 119.99752 * 355.54979 * 12 11 10 14 14 C 1.47834 * 120.00645 * 175.54276 * 12 11 10 15 15 C 1.39947 * 120.02339 * 359.73011 * 14 12 11 16 16 C 1.38328 * 120.35215 * 179.69048 * 15 14 12 17 17 C 1.37756 * 120.41409 * 0.60375 * 16 15 14 18 18 C 1.40748 * 120.04426 * 359.67693 * 17 16 15 19 19 C 1.41439 * 120.17587 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00061 * 148.78077 * 19 18 17 21 21 C 1.39934 * 120.00144 * 328.77497 * 19 18 17 22 22 N 1.30827 * 120.00073 * 167.75241 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 347.75962 * 21 19 18 24 24 H 1.48500 * 109.47028 * 92.58533 * 23 21 19 25 25 H 1.48505 * 109.47140 * 212.58334 * 23 21 19 26 26 H 1.48501 * 109.47012 * 332.58307 * 23 21 19 27 27 C 1.39017 * 120.03220 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.47537 * 270.00173 * 1 2 3 29 29 H 1.08999 * 109.47193 * 30.01106 * 1 2 3 30 30 H 1.09008 * 109.46667 * 150.00853 * 1 2 3 31 31 H 1.07996 * 120.06569 * 359.95538 * 5 4 2 32 32 H 1.08003 * 119.77718 * 179.97438 * 8 6 5 33 33 H 1.07996 * 119.93885 * 180.30016 * 9 8 6 34 34 H 0.96999 * 120.00187 * 215.82300 * 11 10 9 35 35 H 1.07993 * 119.82395 * 359.97367 * 15 14 12 36 36 H 1.08001 * 119.79145 * 180.28092 * 16 15 14 37 37 H 1.07999 * 119.97729 * 179.69269 * 17 16 15 38 38 H 0.97002 * 120.00079 * 180.02562 * 22 21 19 39 39 H 1.07998 * 120.20120 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2409 -1.2709 0.0006 5 6 1.5503 -2.4834 -0.1154 6 6 2.2471 -3.6732 -0.1146 7 9 1.5803 -4.8427 -0.2270 8 6 3.6306 -3.6751 0.0012 9 6 4.3250 -2.4875 0.1100 10 6 3.6416 -1.2789 0.1171 11 7 4.3403 -0.0814 0.2332 12 6 5.5501 0.0518 -0.3458 13 8 6.0666 -0.8987 -0.9002 14 6 6.2489 1.3540 -0.3070 15 6 5.6523 2.4503 0.3260 16 6 6.3029 3.6702 0.3719 17 6 7.5395 3.8235 -0.2152 18 6 8.1528 2.7339 -0.8615 19 6 9.4227 2.8881 -1.4648 20 1 10.1064 2.0529 -1.5052 21 6 9.7933 4.1226 -2.0096 22 7 11.0378 4.3407 -2.3489 23 14 8.5111 5.4592 -2.2520 24 1 8.4805 6.3387 -1.0559 25 1 8.8568 6.2653 -3.4504 26 1 7.1766 4.8362 -2.4427 27 6 7.4965 1.4922 -0.9045 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5137 31 1 0.4741 -2.4867 -0.2050 32 1 4.1675 -4.6123 0.0013 33 1 5.4016 -2.4985 0.1948 34 1 3.9586 0.6563 0.7341 35 1 4.6807 2.3421 0.7850 36 1 5.8360 4.5090 0.8668 37 1 8.0390 4.7804 -0.1794 38 1 11.2948 5.1966 -2.7261 39 1 7.9589 0.6501 -1.3979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538267934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:47 Heat of formation + Delta-G solvation = -81.227081 kcal Electronic energy + Delta-G solvation = -26322.961877 eV Core-core repulsion = 22302.311825 eV Total energy + Delta-G solvation = -4020.650052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90307 -42.15046 -40.60309 -39.42460 -38.75503 -36.01257 -35.54178 -33.29803 -32.72723 -31.93182 -30.42776 -30.06726 -27.17292 -25.44737 -25.24779 -23.43386 -22.54087 -21.72128 -21.27275 -19.83982 -18.82632 -18.50370 -18.19169 -17.71130 -17.21219 -16.64103 -16.53263 -16.44161 -16.15030 -15.96402 -15.84311 -15.67176 -15.50910 -15.14085 -14.63298 -14.54056 -14.23383 -14.12417 -13.88794 -13.60545 -13.36799 -13.01728 -13.00268 -12.91900 -12.68654 -12.62782 -12.36225 -11.75984 -11.64979 -11.55490 -11.31300 -11.01350 -10.68542 -10.28772 -9.74701 -9.67348 -9.22409 -8.91837 -6.60465 -0.65847 -0.14274 0.19530 0.67976 1.23237 1.24743 1.38958 1.45886 1.73507 1.89311 2.09096 2.47033 2.62166 2.87990 3.20290 3.36521 3.52562 3.64599 3.85565 4.04966 4.11702 4.18668 4.28998 4.33561 4.47194 4.52733 4.63380 4.71214 4.79048 4.83094 4.87576 4.96548 5.02547 5.09874 5.24504 5.25741 5.35837 5.54726 5.63157 5.71782 5.78277 6.00410 6.22446 6.28241 6.44177 6.58226 6.70239 6.92108 8.17003 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.002996 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.345983 B = 9342.946487 C =10326.161045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.396 3.604 3 O -0.492 6.492 4 C -0.186 4.186 5 C -0.068 4.068 6 C 0.064 3.936 7 F -0.135 7.135 8 C -0.094 4.094 9 C -0.128 4.128 10 C 0.178 3.822 11 N -0.650 5.650 12 C 0.565 3.435 13 O -0.553 6.553 14 C -0.117 4.117 15 C -0.179 4.179 16 C -0.082 4.082 17 C -0.220 4.220 18 C 0.066 3.934 19 C -0.483 4.483 20 H 0.053 0.947 21 C 0.043 3.957 22 N -0.853 5.853 23 Si 0.967 3.033 24 H -0.246 1.246 25 H -0.279 1.279 26 H -0.251 1.251 27 C -0.155 4.155 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.191 0.809 32 H 0.161 0.839 33 H 0.135 0.865 34 H 0.426 0.574 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.295 0.705 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.786 -9.372 7.168 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.277 3.723 3 O -0.370 6.370 4 C -0.190 4.190 5 C -0.087 4.087 6 C 0.044 3.956 7 F -0.114 7.114 8 C -0.113 4.113 9 C -0.149 4.149 10 C 0.080 3.920 11 N -0.298 5.298 12 C 0.357 3.643 13 O -0.432 6.432 14 C -0.120 4.120 15 C -0.199 4.199 16 C -0.100 4.100 17 C -0.239 4.239 18 C 0.063 3.937 19 C -0.513 4.513 20 H 0.072 0.928 21 C -0.170 4.170 22 N -0.479 5.479 23 Si 0.790 3.210 24 H -0.171 1.171 25 H -0.206 1.206 26 H -0.175 1.175 27 C -0.176 4.176 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.208 0.792 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.270 0.730 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.860 -9.329 6.665 26.472 hybrid contribution 0.638 0.347 -0.250 0.768 sum -23.222 -8.982 6.415 25.712 Atomic orbital electron populations 1.22275 0.89145 1.06531 1.06775 1.22946 0.93950 0.85856 0.69525 1.90500 1.72806 1.35168 1.38513 1.20405 0.91413 0.96810 1.10334 1.21554 1.02558 0.88190 0.96359 1.17515 0.90025 0.81889 1.06159 1.91527 1.80360 1.45727 1.93793 1.21466 0.92880 0.99577 0.97409 1.21180 1.01460 0.90484 1.01751 1.18342 0.91061 0.86249 0.96305 1.43476 1.18210 1.15635 1.52475 1.18767 0.80414 0.88438 0.76671 1.90685 1.66435 1.41151 1.44900 1.19520 0.95943 0.92883 1.03651 1.20964 1.00852 0.92490 1.05555 1.21004 0.93713 0.97598 0.97664 1.21441 0.98939 0.98944 1.04558 1.17774 0.92343 0.92172 0.91378 1.19466 0.99276 0.97735 1.34818 0.92826 1.26872 0.97654 1.00617 0.91901 1.69679 1.19005 1.26353 1.32889 0.85491 0.79544 0.77416 0.78547 1.17073 1.20570 1.17506 1.21216 0.94708 0.98041 1.03622 0.85835 0.88934 0.86873 0.79226 0.82121 0.84734 0.72964 0.84536 0.83506 0.87180 0.89419 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 9.86 71.24 0.70 -0.72 16 2 C 0.40 7.19 7.19 27.91 0.20 7.39 16 3 O -0.49 -12.78 14.75 -3.10 -0.05 -12.82 16 4 C -0.19 -3.67 5.88 -20.05 -0.12 -3.79 16 5 C -0.07 -0.93 9.36 22.62 0.21 -0.72 16 6 C 0.06 1.08 7.28 22.33 0.16 1.25 16 7 F -0.14 -2.25 17.26 44.97 0.78 -1.47 16 8 C -0.09 -1.86 10.00 22.36 0.22 -1.64 16 9 C -0.13 -3.40 8.67 22.36 0.19 -3.20 16 10 C 0.18 4.82 6.30 38.70 0.24 5.06 16 11 N -0.65 -20.43 4.46 -305.40 -1.36 -21.80 16 12 C 0.57 22.36 7.61 86.78 0.66 23.02 16 13 O -0.55 -24.35 13.79 -3.90 -0.05 -24.40 16 14 C -0.12 -5.01 5.87 -20.14 -0.12 -5.13 16 15 C -0.18 -6.66 9.55 22.71 0.22 -6.44 16 16 C -0.08 -3.11 10.01 22.18 0.22 -2.89 16 17 C -0.22 -9.97 6.99 22.77 0.16 -9.81 16 18 C 0.07 3.41 5.13 -21.32 -0.11 3.30 16 19 C -0.48 -27.75 9.60 23.47 0.23 -27.52 16 20 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 21 C 0.04 2.35 5.47 85.25 0.47 2.81 16 22 N -0.85 -47.34 13.93 21.82 0.30 -47.03 16 23 Si 0.97 42.12 24.40 68.60 1.67 43.80 16 24 H -0.25 -9.72 6.67 99.48 0.66 -9.05 16 25 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.25 -11.18 6.67 99.48 0.66 -10.52 16 27 C -0.16 -7.76 9.34 23.01 0.21 -7.54 16 28 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.24 6.28 -2.38 -0.01 0.23 16 31 H 0.19 0.95 6.25 -2.91 -0.02 0.94 16 32 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.13 4.17 6.25 -2.91 -0.02 4.16 16 34 H 0.43 12.23 4.66 -92.71 -0.43 11.79 16 35 H 0.14 4.14 6.39 -2.91 -0.02 4.12 16 36 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.11 4.86 4.40 -2.91 -0.01 4.85 16 38 H 0.30 14.64 8.30 -92.71 -0.77 13.87 16 39 H 0.10 5.11 7.64 -2.91 -0.02 5.09 16 Total: -1.00 -70.07 333.77 5.67 -64.40 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.62 Total: 25.90 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.76 Total: -26.58 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.06 Total: -68.83 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.10 Total: -37.23 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.67 Total: 43.80 kcal Total: -70.07 5.67 -64.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538267934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.824 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds