Wall clock time and date at job start Tue Mar 31 2020 15:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.47244 * 2 1 4 4 C 1.76194 * 102.99717 * 179.97438 * 3 2 1 5 5 C 1.39057 * 120.04861 * 0.02673 * 4 3 2 6 6 C 1.38111 * 120.06783 * 179.97438 * 5 4 3 7 7 C 1.38189 * 120.15498 * 359.74322 * 6 5 4 8 8 C 1.38960 * 120.08250 * 0.50659 * 7 6 5 9 9 N 1.39814 * 120.03199 * 179.77024 * 8 7 6 10 10 C 1.34776 * 120.00092 * 212.65661 * 9 8 7 11 11 O 1.21629 * 119.99837 * 5.17034 * 10 9 8 12 12 C 1.47382 * 120.00420 * 185.17682 * 10 9 8 13 13 C 1.39254 * 120.28041 * 355.98702 * 12 10 9 14 14 C 1.38203 * 120.08706 * 180.27752 * 13 12 10 15 15 C 1.38838 * 120.67951 * 359.69674 * 14 13 12 16 16 C 1.37580 * 120.57834 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88370 * 0.02562 * 16 15 14 18 18 C 1.40865 * 120.33259 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99961 * 216.30089 * 18 17 16 20 20 C 1.40277 * 120.00336 * 36.30058 * 18 17 16 21 21 N 1.30624 * 120.00441 * 190.00668 * 20 18 17 22 22 Si 1.86808 * 119.99817 * 10.00473 * 20 18 17 23 23 H 1.48493 * 109.47019 * 266.86850 * 22 20 18 24 24 H 1.48500 * 109.46722 * 26.86839 * 22 20 18 25 25 H 1.48495 * 109.46843 * 146.86619 * 22 20 18 26 26 C 1.38765 * 119.93606 * 359.49438 * 8 7 6 27 27 H 1.08995 * 109.47311 * 299.99973 * 1 2 3 28 28 H 1.09002 * 109.47176 * 59.99803 * 1 2 3 29 29 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46764 * 239.99880 * 2 1 3 31 31 H 1.09005 * 109.46690 * 120.00051 * 2 1 3 32 32 H 1.08003 * 119.96036 * 359.95223 * 5 4 3 33 33 H 1.08001 * 119.92262 * 179.97438 * 6 5 4 34 34 H 1.07996 * 119.96252 * 180.27640 * 7 6 5 35 35 H 0.97000 * 119.99930 * 32.65419 * 9 8 7 36 36 H 1.08001 * 119.95869 * 359.97438 * 13 12 10 37 37 H 1.08008 * 119.65715 * 179.72586 * 14 13 12 38 38 H 1.07999 * 119.70679 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.06046 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00320 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.07986 * 180.22764 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5115 0.0008 5 6 4.4415 0.2370 0.0006 6 6 5.8138 0.0808 0.0007 7 6 6.6387 1.1895 -0.0045 8 6 6.0898 2.4661 0.0009 9 7 6.9253 3.5870 0.0005 10 6 6.5427 4.7130 0.6347 11 8 5.5154 4.7251 1.2858 12 6 7.3688 5.9298 0.5391 13 6 8.5870 5.9002 -0.1349 14 6 9.3612 7.0421 -0.2172 15 6 8.9353 8.2299 0.3620 16 6 7.7339 8.2918 1.0296 17 6 6.9271 7.1433 1.1288 18 6 5.6955 7.1958 1.8106 19 1 5.3633 6.3482 2.3916 20 6 4.9005 8.3491 1.7348 21 7 3.8610 8.4782 2.5152 22 14 5.3284 9.7003 0.5179 23 1 6.1831 10.7148 1.1852 24 1 6.0616 9.1154 -0.6334 25 1 4.0808 10.3444 0.0347 26 6 4.7115 2.6272 0.0008 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7996 -0.6315 0.0008 33 1 6.2432 -0.9102 0.0010 34 1 7.7113 1.0637 -0.0089 35 1 7.7805 3.5544 -0.4561 36 1 8.9296 4.9826 -0.5897 37 1 10.3069 7.0103 -0.7378 38 1 9.5527 9.1130 0.2878 39 1 7.4107 9.2203 1.4766 40 1 3.3114 9.2759 2.4631 41 1 4.2824 3.6183 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586317934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:48 Heat of formation + Delta-G solvation = 11.000138 kcal Electronic energy + Delta-G solvation = -24259.969278 eV Core-core repulsion = 20809.531674 eV Total energy + Delta-G solvation = -3450.437604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00169 -38.35755 -36.95101 -34.38673 -33.60193 -33.04868 -30.83525 -30.66660 -30.53647 -28.81111 -25.51197 -24.18092 -23.04402 -22.53308 -21.96195 -20.89257 -19.55642 -18.13332 -17.37836 -16.73749 -16.30558 -15.76159 -15.38147 -15.03137 -14.91544 -14.63404 -14.28678 -14.18283 -13.91714 -13.70781 -13.22938 -12.87102 -12.69458 -12.65255 -12.49088 -12.24371 -12.07963 -11.70558 -11.62509 -11.56001 -11.12698 -11.00766 -10.80003 -10.50171 -10.25079 -10.21807 -9.99291 -9.85490 -9.40867 -9.32634 -8.59646 -7.96017 -7.79261 -7.65823 -7.26317 -6.97174 -4.57007 1.33850 1.54442 1.56594 2.03491 2.51062 2.54077 3.04264 3.13812 3.24282 3.62159 3.72656 3.90139 4.05513 4.52578 4.70006 4.73953 4.97289 5.11111 5.23150 5.30745 5.32035 5.48333 5.56336 5.61698 5.65368 5.74353 5.77704 5.85318 5.93740 6.05383 6.26466 6.40145 6.45117 6.51880 6.60395 6.71294 6.72783 7.01590 7.13533 7.29495 7.32268 7.51211 7.66481 7.93006 8.07973 8.38912 8.54548 8.77134 9.13323 9.98880 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003716 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.332483 B = 7533.126183 C = 9281.083327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 S -0.110 6.110 4 C -0.063 4.063 5 C -0.166 4.166 6 C -0.082 4.082 7 C -0.165 4.165 8 C 0.190 3.810 9 N -0.688 5.688 10 C 0.556 3.444 11 O -0.504 6.504 12 C -0.254 4.254 13 C -0.040 4.040 14 C -0.253 4.253 15 C -0.064 4.064 16 C -0.221 4.221 17 C 0.116 3.884 18 C -0.398 4.398 19 H 0.125 0.875 20 C 0.079 3.921 21 N -0.786 5.786 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.241 1.241 25 H -0.287 1.287 26 C -0.105 4.105 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.404 0.596 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.289 0.711 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -13.541 -6.676 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.264 4.264 3 S 0.133 5.867 4 C -0.176 4.176 5 C -0.190 4.190 6 C -0.103 4.103 7 C -0.188 4.188 8 C 0.092 3.908 9 N -0.334 5.334 10 C 0.352 3.648 11 O -0.380 6.380 12 C -0.259 4.259 13 C -0.059 4.059 14 C -0.272 4.272 15 C -0.083 4.083 16 C -0.240 4.240 17 C 0.112 3.888 18 C -0.424 4.424 19 H 0.142 0.858 20 C -0.143 4.143 21 N -0.408 5.408 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.164 1.164 25 H -0.214 1.214 26 C -0.131 4.131 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.240 0.760 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.410 -12.352 -6.058 13.829 hybrid contribution 1.495 -0.468 -0.642 1.693 sum 0.085 -12.820 -6.700 14.466 Atomic orbital electron populations 1.21505 0.91989 1.02628 1.03430 1.23589 1.00342 0.97108 1.05318 1.85822 0.98084 1.10283 1.92523 1.21520 0.96543 0.95908 1.03672 1.20965 0.95723 0.95120 1.07225 1.20698 0.92724 0.97991 0.98841 1.20880 0.99879 0.91035 1.07022 1.17645 0.89947 0.86800 0.96412 1.43804 1.21735 1.11844 1.56012 1.18553 0.85815 0.82297 0.78151 1.90767 1.25120 1.82696 1.39406 1.19237 0.98975 0.94613 1.13055 1.20770 0.93298 0.96525 0.95260 1.20287 1.01623 0.93904 1.11382 1.20757 0.95548 0.96543 0.95459 1.21151 0.96470 0.98850 1.07563 1.17514 0.93140 0.89702 0.88485 1.20241 1.00062 1.00945 1.21156 0.85768 1.26406 0.94320 0.98391 0.95158 1.69561 1.12737 1.27612 1.30914 0.86389 0.77904 0.79993 0.82488 1.19343 1.16418 1.21437 1.20880 0.91542 0.98933 1.01758 0.91450 0.91580 0.91005 0.89650 0.89558 0.86382 0.85853 0.85801 0.75963 0.88685 0.88383 0.88432 0.87690 0.90067 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.92 37.16 0.37 -0.77 16 2 C -0.12 -1.15 5.05 37.16 0.19 -0.96 16 3 S -0.11 -1.62 21.92 -107.50 -2.36 -3.98 16 4 C -0.06 -1.02 6.11 -39.06 -0.24 -1.26 16 5 C -0.17 -2.21 9.36 -39.32 -0.37 -2.58 16 6 C -0.08 -1.02 10.03 -39.65 -0.40 -1.42 16 7 C -0.16 -2.27 9.96 -39.33 -0.39 -2.67 16 8 C 0.19 3.28 6.28 -83.75 -0.53 2.75 16 9 N -0.69 -12.19 5.29 -10.87 -0.06 -12.25 16 10 C 0.56 12.50 7.46 -12.54 -0.09 12.40 16 11 O -0.50 -13.15 11.18 5.25 0.06 -13.09 16 12 C -0.25 -5.81 5.92 -104.37 -0.62 -6.43 16 13 C -0.04 -0.77 9.53 -39.22 -0.37 -1.14 16 14 C -0.25 -4.81 10.03 -39.37 -0.39 -5.20 16 15 C -0.06 -1.30 10.01 -39.60 -0.40 -1.70 16 16 C -0.22 -5.12 6.97 -38.89 -0.27 -5.39 16 17 C 0.12 2.94 5.04 -106.54 -0.54 2.40 16 18 C -0.40 -10.97 8.31 -37.82 -0.31 -11.28 16 19 H 0.12 3.80 5.97 -52.49 -0.31 3.49 16 20 C 0.08 2.07 5.48 -17.30 -0.09 1.98 16 21 N -0.79 -21.09 13.92 55.56 0.77 -20.32 16 22 Si 0.91 20.39 24.51 -169.99 -4.17 16.23 16 23 H -0.27 -5.71 6.78 56.52 0.38 -5.33 16 24 H -0.24 -5.55 6.67 56.52 0.38 -5.17 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.11 -1.98 8.40 -39.17 -0.33 -2.31 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.76 7.75 -51.92 -0.40 0.36 16 31 H 0.09 0.81 7.75 -51.92 -0.40 0.41 16 32 H 0.12 1.27 5.87 -52.48 -0.31 0.96 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.40 5.79 6.86 -40.82 -0.28 5.51 16 36 H 0.10 1.45 6.41 -52.49 -0.34 1.12 16 37 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.11 2.39 4.98 -52.49 -0.26 2.13 16 40 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 41 H 0.15 3.20 6.37 -52.49 -0.33 2.86 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -30.22 348.13 -10.06 -40.28 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.77 Total: 11.47 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -4.79 Total: -23.58 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.72 Total: -32.57 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.06 Total: -13.09 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.17 Total: 16.23 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.36 Total: -3.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.22 -10.06 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586317934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.280 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds