Wall clock time and date at job start Tue Mar 31 2020 15:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81400 * 109.47244 * 2 1 4 4 C 1.76194 * 102.99717 * 179.97438 * 3 2 1 5 5 C 1.39057 * 120.04861 * 0.02673 * 4 3 2 6 6 C 1.38111 * 120.06783 * 179.97438 * 5 4 3 7 7 C 1.38189 * 120.15498 * 359.74322 * 6 5 4 8 8 C 1.38960 * 120.08250 * 0.50659 * 7 6 5 9 9 N 1.39814 * 120.03199 * 179.77024 * 8 7 6 10 10 C 1.34776 * 120.00092 * 212.65661 * 9 8 7 11 11 O 1.21629 * 119.99837 * 5.17034 * 10 9 8 12 12 C 1.47382 * 120.00420 * 185.17682 * 10 9 8 13 13 C 1.39254 * 120.28041 * 355.98702 * 12 10 9 14 14 C 1.38203 * 120.08706 * 180.27752 * 13 12 10 15 15 C 1.38838 * 120.67951 * 359.69674 * 14 13 12 16 16 C 1.37580 * 120.57834 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88370 * 0.02562 * 16 15 14 18 18 C 1.40865 * 120.33259 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99961 * 216.30089 * 18 17 16 20 20 C 1.40277 * 120.00336 * 36.30058 * 18 17 16 21 21 N 1.30624 * 120.00441 * 190.00668 * 20 18 17 22 22 Si 1.86808 * 119.99817 * 10.00473 * 20 18 17 23 23 H 1.48493 * 109.47019 * 266.86850 * 22 20 18 24 24 H 1.48500 * 109.46722 * 26.86839 * 22 20 18 25 25 H 1.48495 * 109.46843 * 146.86619 * 22 20 18 26 26 C 1.38765 * 119.93606 * 359.49438 * 8 7 6 27 27 H 1.08995 * 109.47311 * 299.99973 * 1 2 3 28 28 H 1.09002 * 109.47176 * 59.99803 * 1 2 3 29 29 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46764 * 239.99880 * 2 1 3 31 31 H 1.09005 * 109.46690 * 120.00051 * 2 1 3 32 32 H 1.08003 * 119.96036 * 359.95223 * 5 4 3 33 33 H 1.08001 * 119.92262 * 179.97438 * 6 5 4 34 34 H 1.07996 * 119.96252 * 180.27640 * 7 6 5 35 35 H 0.97000 * 119.99930 * 32.65419 * 9 8 7 36 36 H 1.08001 * 119.95869 * 359.97438 * 13 12 10 37 37 H 1.08008 * 119.65715 * 179.72586 * 14 13 12 38 38 H 1.07999 * 119.70679 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.06046 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00320 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.07986 * 180.22764 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5115 0.0008 5 6 4.4415 0.2370 0.0006 6 6 5.8138 0.0808 0.0007 7 6 6.6387 1.1895 -0.0045 8 6 6.0898 2.4661 0.0009 9 7 6.9253 3.5870 0.0005 10 6 6.5427 4.7130 0.6347 11 8 5.5154 4.7251 1.2858 12 6 7.3688 5.9298 0.5391 13 6 8.5870 5.9002 -0.1349 14 6 9.3612 7.0421 -0.2172 15 6 8.9353 8.2299 0.3620 16 6 7.7339 8.2918 1.0296 17 6 6.9271 7.1433 1.1288 18 6 5.6955 7.1958 1.8106 19 1 5.3633 6.3482 2.3916 20 6 4.9005 8.3491 1.7348 21 7 3.8610 8.4782 2.5152 22 14 5.3284 9.7003 0.5179 23 1 6.1831 10.7148 1.1852 24 1 6.0616 9.1154 -0.6334 25 1 4.0808 10.3444 0.0347 26 6 4.7115 2.6272 0.0008 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7996 -0.6315 0.0008 33 1 6.2432 -0.9102 0.0010 34 1 7.7113 1.0637 -0.0089 35 1 7.7805 3.5544 -0.4561 36 1 8.9296 4.9826 -0.5897 37 1 10.3069 7.0103 -0.7378 38 1 9.5527 9.1130 0.2878 39 1 7.4107 9.2203 1.4766 40 1 3.3114 9.2759 2.4631 41 1 4.2824 3.6183 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586317934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:47 Heat of formation + Delta-G solvation = -7.191290 kcal Electronic energy + Delta-G solvation = -24260.758117 eV Core-core repulsion = 20809.531674 eV Total energy + Delta-G solvation = -3451.226443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52300 -39.82882 -38.58405 -36.00906 -35.37214 -33.83597 -32.36390 -32.24006 -31.97016 -30.18973 -27.30833 -25.24634 -24.48159 -23.66157 -23.46310 -22.46670 -21.15129 -19.72832 -18.99041 -18.30008 -17.41173 -17.27609 -16.91343 -16.29941 -16.07190 -15.85423 -15.78950 -15.65143 -15.39518 -15.27773 -14.58009 -14.50610 -14.26971 -14.09344 -13.80467 -13.36321 -13.29973 -13.16331 -12.83114 -12.71147 -12.57414 -12.45061 -12.19038 -12.13986 -12.06287 -11.67384 -11.50372 -11.12703 -11.08071 -10.56684 -10.37353 -9.63072 -9.47306 -9.15353 -8.86586 -8.45074 -6.54045 0.07105 0.26519 0.47543 0.50813 0.81043 1.20422 1.34679 1.43310 1.49675 2.05340 2.12603 2.22611 2.63171 2.79475 3.48828 3.90245 3.96839 3.98829 4.08044 4.14427 4.18479 4.24875 4.39743 4.45467 4.53974 4.56873 4.67755 4.77598 4.81727 4.83911 4.85927 4.97295 5.19109 5.23681 5.25280 5.32714 5.37343 5.43288 5.50552 5.64669 5.82479 5.91558 6.01962 6.22890 6.42641 6.56024 6.72772 6.80160 7.46351 8.17405 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003716 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.332483 B = 7533.126183 C = 9281.083327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 S -0.186 6.186 4 C -0.072 4.072 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.152 4.152 8 C 0.160 3.840 9 N -0.669 5.669 10 C 0.550 3.450 11 O -0.553 6.553 12 C -0.269 4.269 13 C -0.038 4.038 14 C -0.228 4.228 15 C -0.059 4.059 16 C -0.245 4.245 17 C 0.101 3.899 18 C -0.449 4.449 19 H 0.070 0.930 20 C 0.036 3.964 21 N -0.846 5.846 22 Si 0.967 3.033 23 H -0.244 1.244 24 H -0.248 1.248 25 H -0.281 1.281 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.422 0.578 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.294 0.706 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -16.517 -9.428 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.242 4.242 3 S 0.057 5.943 4 C -0.185 4.185 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.175 4.175 8 C 0.064 3.936 9 N -0.316 5.316 10 C 0.345 3.655 11 O -0.432 6.432 12 C -0.273 4.273 13 C -0.057 4.057 14 C -0.246 4.246 15 C -0.077 4.077 16 C -0.264 4.264 17 C 0.097 3.903 18 C -0.478 4.478 19 H 0.088 0.912 20 C -0.179 4.179 21 N -0.472 5.472 22 Si 0.789 3.211 23 H -0.169 1.169 24 H -0.171 1.171 25 H -0.208 1.208 26 C -0.168 4.168 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.169 0.831 33 H 0.191 0.809 34 H 0.178 0.822 35 H 0.262 0.738 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.705 -15.361 -8.832 17.924 hybrid contribution 0.460 0.110 0.074 0.478 sum 3.165 -15.250 -8.758 17.869 Atomic orbital electron populations 1.21557 0.90725 1.04351 1.02830 1.23713 1.01086 0.92626 1.06756 1.86112 0.99059 1.16519 1.92649 1.21605 0.96286 0.96468 1.04117 1.21435 0.97042 0.94543 1.05037 1.21294 0.91969 0.99677 0.96029 1.21278 1.01956 0.89374 1.04852 1.17913 0.89217 0.87974 0.98540 1.43403 1.22310 1.10874 1.55030 1.18754 0.85142 0.83619 0.77982 1.90783 1.27121 1.83747 1.41535 1.19648 1.00556 0.94028 1.13108 1.21256 0.91396 0.99100 0.93905 1.20968 1.02547 0.92595 1.08529 1.21289 0.94237 0.98790 0.93421 1.21246 0.97790 0.98072 1.09263 1.17790 0.92497 0.91865 0.88131 1.19968 1.02699 1.00397 1.24730 0.91181 1.27149 0.93907 1.00261 0.96561 1.69625 1.14786 1.29073 1.33748 0.85488 0.78033 0.77641 0.79923 1.16895 1.17127 1.20782 1.20658 0.93246 0.97709 1.05188 0.92455 0.91946 0.87772 0.87654 0.88333 0.83068 0.80923 0.82202 0.73848 0.83913 0.83436 0.84337 0.87959 0.89559 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.92 71.98 0.71 -1.36 16 2 C -0.09 -1.73 5.05 71.98 0.36 -1.37 16 3 S -0.19 -5.87 21.92 -56.49 -1.24 -7.11 16 4 C -0.07 -2.39 6.11 22.61 0.14 -2.25 16 5 C -0.16 -3.76 9.36 22.44 0.21 -3.55 16 6 C -0.07 -1.42 10.03 22.23 0.22 -1.19 16 7 C -0.15 -3.69 9.96 22.43 0.22 -3.47 16 8 C 0.16 5.57 6.28 38.17 0.24 5.81 16 9 N -0.67 -23.79 5.29 -306.54 -1.62 -25.41 16 10 C 0.55 26.20 7.46 86.65 0.65 26.84 16 11 O -0.55 -32.27 11.18 -4.12 -0.05 -32.32 16 12 C -0.27 -12.48 5.92 -19.70 -0.12 -12.60 16 13 C -0.04 -1.33 9.53 22.51 0.21 -1.12 16 14 C -0.23 -7.37 10.03 22.41 0.22 -7.15 16 15 C -0.06 -2.15 10.01 22.26 0.22 -1.93 16 16 C -0.24 -11.20 6.97 22.72 0.16 -11.04 16 17 C 0.10 5.34 5.04 -21.11 -0.11 5.24 16 18 C -0.45 -27.44 8.31 23.41 0.19 -27.25 16 19 H 0.07 4.91 5.97 -2.91 -0.02 4.90 16 20 C 0.04 2.05 5.48 85.37 0.47 2.52 16 21 N -0.85 -50.40 13.92 21.88 0.30 -50.10 16 22 Si 0.97 44.30 24.51 68.60 1.68 45.98 16 23 H -0.24 -10.11 6.78 99.48 0.67 -9.44 16 24 H -0.25 -11.37 6.67 99.48 0.66 -10.71 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 26 C -0.14 -5.79 8.40 22.54 0.19 -5.60 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.55 7.75 -2.39 -0.02 1.53 16 31 H 0.10 1.60 7.75 -2.39 -0.02 1.58 16 32 H 0.15 2.59 5.87 -2.91 -0.02 2.58 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.42 11.07 6.86 -92.71 -0.64 10.43 16 36 H 0.14 3.58 6.41 -2.91 -0.02 3.56 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.10 4.66 4.98 -2.91 -0.01 4.65 16 40 H 0.29 15.63 8.29 -92.71 -0.77 14.86 16 41 H 0.09 4.72 6.37 -2.91 -0.02 4.70 16 Total: -1.00 -80.15 348.13 3.65 -76.49 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.37 Total: 31.93 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.21 Total: -39.47 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.32 Total: -75.50 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.05 Total: -32.32 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.68 Total: 45.98 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.24 Total: -7.11 kcal Total: -80.15 3.65 -76.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586317934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.303 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds