Wall clock time and date at job start Tue Mar 31 2020 14:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46966 * 163.86386 * 3 2 1 5 5 C 1.37091 * 119.99639 * 264.13533 * 4 3 2 6 6 H 1.08006 * 120.00045 * 197.43760 * 5 4 3 7 7 C 1.38945 * 120.00686 * 17.44102 * 5 4 3 8 8 N 1.31419 * 119.99612 * 21.51939 * 7 5 4 9 9 Si 1.86801 * 120.00633 * 201.52130 * 7 5 4 10 10 H 1.48495 * 109.46925 * 89.99430 * 9 7 5 11 11 H 1.48497 * 109.47181 * 209.99845 * 9 7 5 12 12 H 1.48504 * 109.46760 * 329.99749 * 9 7 5 13 13 C 1.34772 * 119.99981 * 84.14084 * 4 3 2 14 14 O 1.21288 * 120.00012 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00087 * 359.97438 * 13 4 3 16 16 O 1.42902 * 109.47385 * 180.02562 * 15 13 4 17 17 C 1.35865 * 117.00163 * 180.02562 * 16 15 13 18 18 C 1.38828 * 119.93712 * 179.97438 * 17 16 15 19 19 C 1.37923 * 120.05831 * 179.97438 * 18 17 16 20 20 C 1.39335 * 119.94045 * 0.02562 * 19 18 17 21 21 C 1.48433 * 120.06235 * 179.97438 * 20 19 18 22 22 N 1.34054 * 126.67288 * 0.02562 * 21 20 19 23 23 N 1.28989 * 107.26750 * 179.97438 * 22 21 20 24 24 N 1.28735 * 108.94331 * 0.02562 * 23 22 21 25 25 H 0.96996 * 125.33641 * 179.97438 * 24 23 22 26 26 N 1.28866 * 109.32385 * 359.97438 * 24 23 22 27 27 C 1.39350 * 119.87722 * 0.24919 * 20 19 18 28 28 C 1.37919 * 119.93584 * 359.51674 * 27 20 19 29 29 H 4.40643 * 5.51490 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47313 * 43.86343 * 3 2 1 31 31 H 1.08998 * 109.47103 * 283.86318 * 3 2 1 32 32 H 0.97002 * 119.99912 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47346 * 60.00144 * 15 13 4 34 34 H 1.09000 * 109.47391 * 300.00112 * 15 13 4 35 35 H 1.07998 * 119.97079 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.02609 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.02826 * 179.72529 * 27 20 19 38 38 H 1.07997 * 119.96737 * 180.22901 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3277 -0.3839 5 6 3.4764 1.5815 -1.6868 6 1 4.0886 2.4383 -1.9271 7 6 3.0363 0.7367 -2.6983 8 7 1.9852 -0.0280 -2.5047 9 14 3.9384 0.6878 -4.3333 10 1 5.0071 -0.3417 -4.2783 11 1 2.9810 0.3502 -5.4170 12 1 4.5443 2.0163 -4.6041 13 6 3.2455 2.2989 0.5438 14 8 3.6498 3.3974 0.2261 15 6 2.8684 2.0200 1.9760 16 8 3.0723 3.1970 2.7603 17 6 2.7784 3.1147 4.0842 18 6 2.9544 4.2218 4.9031 19 6 2.6563 4.1412 6.2473 20 6 2.1787 2.9471 6.7833 21 6 1.8576 2.8571 8.2297 22 7 1.9752 3.8357 9.1383 23 7 1.5956 3.3528 10.2725 24 7 1.2499 2.1236 10.1087 25 1 0.9263 1.5339 10.8075 26 7 1.4012 1.7994 8.8706 27 6 2.0085 1.8357 5.9601 28 6 2.3036 1.9233 4.6157 29 1 -1.0502 -0.0003 0.0003 30 1 3.0097 -0.7401 -0.7121 31 1 3.0094 -0.2454 0.9977 32 1 1.6776 -0.6176 -3.2109 33 1 3.4886 1.2122 2.3644 34 1 1.8193 1.7283 2.0253 35 1 3.3250 5.1470 4.4872 36 1 2.7930 5.0030 6.8838 37 1 1.6427 0.9076 6.3738 38 1 2.1683 1.0634 3.9765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:32 Heat of formation + Delta-G solvation = 156.321176 kcal Electronic energy + Delta-G solvation = -25797.759121 eV Core-core repulsion = 21839.622647 eV Total energy + Delta-G solvation = -3958.136474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.63513 -40.20097 -38.71980 -37.31871 -35.21998 -34.50699 -33.51338 -32.27921 -31.37116 -31.20794 -30.03457 -28.16565 -26.48080 -24.96822 -24.64855 -24.05121 -22.52711 -21.54706 -19.61739 -19.19698 -18.24907 -17.97926 -17.33101 -16.77418 -16.56077 -16.13526 -15.83027 -15.57504 -14.72111 -14.54093 -14.19395 -14.01738 -13.98753 -13.50908 -13.16422 -13.05078 -12.80942 -12.47630 -12.35588 -12.20883 -11.94868 -11.69547 -11.57701 -11.38812 -11.32635 -11.08114 -10.85625 -10.58262 -10.47945 -10.37654 -9.48956 -9.38607 -9.13885 -9.02905 -8.54457 -8.10551 -7.99852 -6.43601 -3.96769 0.62988 1.02937 1.26463 2.02575 2.23685 3.05453 3.09655 3.22137 3.29469 3.53232 3.56667 3.72174 3.79205 3.91025 4.02137 4.12369 4.71590 4.77667 4.90185 4.95005 5.06884 5.14771 5.27009 5.29547 5.31456 5.44722 5.49040 5.55753 5.67599 5.92482 6.07589 6.12510 6.17552 6.27369 6.34287 6.58959 6.61218 6.90226 7.42394 7.47923 7.91733 7.94790 8.30555 8.67902 9.00832 9.20676 9.73654 10.57189 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029136 B = 0.002302 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.786701 B =12158.748614 C =12874.888316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.122 4.122 3 C 0.228 3.772 4 N -0.434 5.434 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.450 3.550 14 O -0.560 6.560 15 C 0.047 3.953 16 O -0.280 6.280 17 C 0.164 3.836 18 C -0.156 4.156 19 C -0.034 4.034 20 C -0.077 4.077 21 C 0.235 3.765 22 N -0.273 5.273 23 N -0.053 5.053 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.302 5.302 27 C -0.033 4.033 28 C -0.217 4.217 29 H 0.201 0.799 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -2.542 20.118 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.124 4.124 3 C 0.105 3.895 4 N -0.154 5.154 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.498 5.498 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.237 3.763 14 O -0.442 6.442 15 C -0.032 4.032 16 O -0.190 6.190 17 C 0.116 3.884 18 C -0.175 4.175 19 C -0.054 4.054 20 C -0.080 4.080 21 C -0.044 4.044 22 N -0.146 5.146 23 N -0.048 5.048 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.153 5.153 27 C -0.054 4.054 28 C -0.236 4.236 29 H 0.218 0.782 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.224 -1.722 20.316 20.510 hybrid contribution -0.420 -1.143 -0.846 1.482 sum -2.644 -2.865 19.471 19.857 Atomic orbital electron populations 1.24332 0.95413 1.01499 1.05768 1.23135 0.94324 0.98996 0.95900 1.18331 0.84408 0.87955 0.98823 1.43623 1.56085 1.07732 1.07944 1.19695 1.30284 1.13610 0.80580 0.87509 1.25323 0.95079 0.97191 0.99659 1.70086 1.19515 1.25554 1.34648 0.85940 0.79095 0.79050 0.80769 1.20220 1.21053 1.19278 1.19448 0.85796 0.85381 0.85655 1.90578 1.49847 1.22695 1.81106 1.22720 1.01995 0.86476 0.91960 1.86220 1.80138 1.36863 1.15797 1.19424 0.91332 0.93790 0.83852 1.20402 1.06386 0.98474 0.92241 1.20923 0.93873 0.96493 0.94075 1.17056 1.09563 0.96128 0.85294 1.23686 0.98770 0.85335 0.96616 1.76080 1.18238 1.25454 0.94867 1.78887 1.11879 0.94348 1.19700 1.47697 1.42323 1.09913 1.07723 0.67211 1.74943 1.21712 1.26424 0.92251 1.20893 0.94875 0.97351 0.92252 1.21271 1.07691 0.98304 0.96351 0.78241 0.86759 0.92072 0.91966 0.90242 0.89812 0.84064 0.84145 0.84836 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.87 19.25 29.55 0.57 -4.30 16 2 C -0.12 -2.55 10.87 -37.12 -0.40 -2.95 16 3 C 0.23 4.67 4.91 -6.83 -0.03 4.64 16 4 N -0.43 -10.46 2.60 -117.93 -0.31 -10.76 16 5 C -0.31 -8.34 9.33 -14.94 -0.14 -8.47 16 6 H 0.11 3.00 7.39 -52.48 -0.39 2.61 16 7 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 8 N -0.86 -21.61 9.48 55.50 0.53 -21.09 16 9 Si 0.93 19.78 29.60 -169.99 -5.03 14.75 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 13 C 0.45 10.69 7.64 -10.99 -0.08 10.60 16 14 O -0.56 -15.59 16.15 -14.36 -0.23 -15.82 16 15 C 0.05 0.85 3.82 36.01 0.14 0.98 16 16 O -0.28 -5.15 9.66 -39.22 -0.38 -5.53 16 17 C 0.16 2.43 6.69 -39.15 -0.26 2.17 16 18 C -0.16 -2.03 9.97 -39.48 -0.39 -2.42 16 19 C -0.03 -0.39 9.70 -39.29 -0.38 -0.77 16 20 C -0.08 -0.91 5.88 -104.87 -0.62 -1.52 16 21 C 0.24 2.75 7.93 -156.30 -1.24 1.51 16 22 N -0.27 -3.28 12.23 32.15 0.39 -2.89 16 23 N -0.05 -0.53 13.47 60.35 0.81 0.29 16 24 N -0.23 -1.69 7.90 60.35 0.48 -1.21 16 25 H 0.47 1.09 8.96 -340.37 -3.05 -1.96 16 26 N -0.30 -3.01 12.08 32.17 0.39 -2.63 16 27 C -0.03 -0.38 9.69 -39.28 -0.38 -0.76 16 28 C -0.22 -2.74 9.02 -39.48 -0.36 -3.09 16 29 H 0.20 3.14 7.80 -54.08 -0.42 2.72 16 30 H 0.11 2.47 6.44 -51.93 -0.33 2.14 16 31 H 0.06 0.99 6.69 -51.93 -0.35 0.64 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 33 H 0.08 1.18 6.93 -51.93 -0.36 0.82 16 34 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 35 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 1.41 7.88 -52.49 -0.41 0.99 16 37 H 0.13 1.29 7.88 -52.49 -0.41 0.88 16 38 H 0.14 1.56 6.28 -52.49 -0.33 1.23 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -33.49 343.69 -7.82 -41.31 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.98 Total: 2.07 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.67 Total: -3.68 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 2.29 Total: -38.29 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.61 Total: -21.35 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.49 -7.82 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.634 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds