Wall clock time and date at job start Tue Mar 31 2020 14:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46966 * 163.86386 * 3 2 1 5 5 C 1.37091 * 119.99639 * 264.13533 * 4 3 2 6 6 H 1.08006 * 120.00045 * 197.43760 * 5 4 3 7 7 C 1.38945 * 120.00686 * 17.44102 * 5 4 3 8 8 N 1.31419 * 119.99612 * 21.51939 * 7 5 4 9 9 Si 1.86801 * 120.00633 * 201.52130 * 7 5 4 10 10 H 1.48495 * 109.46925 * 89.99430 * 9 7 5 11 11 H 1.48497 * 109.47181 * 209.99845 * 9 7 5 12 12 H 1.48504 * 109.46760 * 329.99749 * 9 7 5 13 13 C 1.34772 * 119.99981 * 84.14084 * 4 3 2 14 14 O 1.21288 * 120.00012 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00087 * 359.97438 * 13 4 3 16 16 O 1.42902 * 109.47385 * 180.02562 * 15 13 4 17 17 C 1.35865 * 117.00163 * 180.02562 * 16 15 13 18 18 C 1.38828 * 119.93712 * 179.97438 * 17 16 15 19 19 C 1.37923 * 120.05831 * 179.97438 * 18 17 16 20 20 C 1.39335 * 119.94045 * 0.02562 * 19 18 17 21 21 C 1.48433 * 120.06235 * 179.97438 * 20 19 18 22 22 N 1.34054 * 126.67288 * 0.02562 * 21 20 19 23 23 N 1.28989 * 107.26750 * 179.97438 * 22 21 20 24 24 N 1.28735 * 108.94331 * 0.02562 * 23 22 21 25 25 H 0.96996 * 125.33641 * 179.97438 * 24 23 22 26 26 N 1.28866 * 109.32385 * 359.97438 * 24 23 22 27 27 C 1.39350 * 119.87722 * 0.24919 * 20 19 18 28 28 C 1.37919 * 119.93584 * 359.51674 * 27 20 19 29 29 H 4.40643 * 5.51490 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47313 * 43.86343 * 3 2 1 31 31 H 1.08998 * 109.47103 * 283.86318 * 3 2 1 32 32 H 0.97002 * 119.99912 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47346 * 60.00144 * 15 13 4 34 34 H 1.09000 * 109.47391 * 300.00112 * 15 13 4 35 35 H 1.07998 * 119.97079 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.02609 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.02826 * 179.72529 * 27 20 19 38 38 H 1.07997 * 119.96737 * 180.22901 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3277 -0.3839 5 6 3.4764 1.5815 -1.6868 6 1 4.0886 2.4383 -1.9271 7 6 3.0363 0.7367 -2.6983 8 7 1.9852 -0.0280 -2.5047 9 14 3.9384 0.6878 -4.3333 10 1 5.0071 -0.3417 -4.2783 11 1 2.9810 0.3502 -5.4170 12 1 4.5443 2.0163 -4.6041 13 6 3.2455 2.2989 0.5438 14 8 3.6498 3.3974 0.2261 15 6 2.8684 2.0200 1.9760 16 8 3.0723 3.1970 2.7603 17 6 2.7784 3.1147 4.0842 18 6 2.9544 4.2218 4.9031 19 6 2.6563 4.1412 6.2473 20 6 2.1787 2.9471 6.7833 21 6 1.8576 2.8571 8.2297 22 7 1.9752 3.8357 9.1383 23 7 1.5956 3.3528 10.2725 24 7 1.2499 2.1236 10.1087 25 1 0.9263 1.5339 10.8075 26 7 1.4012 1.7994 8.8706 27 6 2.0085 1.8357 5.9601 28 6 2.3036 1.9233 4.6157 29 1 -1.0502 -0.0003 0.0003 30 1 3.0097 -0.7401 -0.7121 31 1 3.0094 -0.2454 0.9977 32 1 1.6776 -0.6176 -3.2109 33 1 3.4886 1.2122 2.3644 34 1 1.8193 1.7283 2.0253 35 1 3.3250 5.1470 4.4872 36 1 2.7930 5.0030 6.8838 37 1 1.6427 0.9076 6.3738 38 1 2.1683 1.0634 3.9765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588350246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:31 Heat of formation + Delta-G solvation = 135.045743 kcal Electronic energy + Delta-G solvation = -25798.681693 eV Core-core repulsion = 21839.622647 eV Total energy + Delta-G solvation = -3959.059046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.41091 -41.41164 -40.30700 -38.52736 -37.05557 -35.30463 -34.36950 -34.07340 -33.06436 -32.18037 -31.07860 -29.60085 -28.11992 -26.32656 -25.75533 -25.06288 -23.54395 -22.50480 -21.09121 -20.12478 -19.75435 -19.36055 -18.44380 -18.09520 -17.82726 -17.39358 -17.20042 -17.00985 -16.28139 -15.84680 -15.59308 -15.52907 -14.90524 -14.67243 -14.38047 -14.36713 -14.06969 -13.74978 -13.70382 -13.54394 -13.50523 -12.92838 -12.78894 -12.61178 -12.43326 -12.30080 -12.24098 -12.15586 -11.82407 -11.47396 -11.20474 -11.09207 -10.67361 -10.37536 -10.06415 -9.88243 -9.13297 -8.34761 -5.95774 -0.24925 0.21574 0.33532 1.32519 1.36214 1.44060 1.47022 1.53590 1.72799 1.89330 2.23533 2.32743 2.39569 2.71471 2.77255 3.01430 3.18603 3.23132 3.73414 3.81437 3.92530 3.98275 4.04447 4.18941 4.21898 4.26479 4.45109 4.51135 4.61050 4.65849 4.96547 5.02885 5.16996 5.29821 5.40839 5.42402 5.46773 5.62960 5.65988 5.98269 6.29685 6.45228 7.10303 7.13980 7.16017 7.33683 7.89226 8.63463 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029136 B = 0.002302 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.786701 B =12158.748614 C =12874.888316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C 0.228 3.772 4 N -0.442 5.442 5 C -0.352 4.352 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.435 3.565 14 O -0.617 6.617 15 C 0.064 3.936 16 O -0.313 6.313 17 C 0.136 3.864 18 C -0.162 4.162 19 C -0.030 4.030 20 C -0.075 4.075 21 C 0.221 3.779 22 N -0.297 5.297 23 N -0.058 5.058 24 N -0.201 5.201 25 H 0.494 0.506 26 N -0.298 5.298 27 C -0.029 4.029 28 C -0.212 4.212 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.274 0.726 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -4.514 21.884 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.161 4.161 3 C 0.106 3.894 4 N -0.161 5.161 5 C -0.479 4.479 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.225 3.775 14 O -0.504 6.504 15 C -0.014 4.014 16 O -0.225 6.225 17 C 0.089 3.911 18 C -0.181 4.181 19 C -0.050 4.050 20 C -0.078 4.078 21 C -0.059 4.059 22 N -0.169 5.169 23 N -0.053 5.053 24 N -0.052 5.052 25 H 0.353 0.647 26 N -0.151 5.151 27 C -0.049 4.049 28 C -0.231 4.231 29 H 0.249 0.751 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.363 -3.746 22.132 22.697 hybrid contribution -0.176 -0.560 -1.230 1.363 sum -3.539 -4.306 20.902 21.632 Atomic orbital electron populations 1.25169 0.96369 0.99793 1.04299 1.23383 0.94917 1.00509 0.97306 1.18466 0.84709 0.85600 1.00656 1.43814 1.55681 1.09251 1.07356 1.19549 1.31799 1.13945 0.82632 0.90723 1.25957 0.95337 0.96325 1.02117 1.70167 1.19479 1.25168 1.35505 0.85062 0.78299 0.78616 0.77111 1.18712 1.20317 1.20493 1.20422 0.84597 0.84521 0.88003 1.90526 1.52248 1.24969 1.82629 1.22477 1.03201 0.87322 0.88419 1.86159 1.81404 1.37227 1.17681 1.19654 0.93545 0.95394 0.82537 1.20519 1.06489 0.98328 0.92737 1.21026 0.93400 0.97138 0.93471 1.17229 1.08613 0.96227 0.85753 1.23651 0.99814 0.85819 0.96607 1.76067 1.19212 1.26228 0.95396 1.78842 1.12167 0.95138 1.19114 1.47768 1.40323 1.09512 1.07582 0.64698 1.74898 1.21271 1.25929 0.92982 1.21080 0.94220 0.97992 0.91620 1.21411 1.06853 0.97813 0.97007 0.75127 0.88348 0.87674 0.91583 0.86789 0.88370 0.84071 0.82859 0.82735 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.70 19.25 74.32 1.43 -7.26 16 2 C -0.16 -6.45 10.87 31.13 0.34 -6.11 16 3 C 0.23 9.17 4.91 84.57 0.42 9.58 16 4 N -0.44 -21.73 2.60 -645.41 -1.68 -23.41 16 5 C -0.35 -19.31 9.33 84.04 0.78 -18.53 16 6 H 0.07 4.48 7.39 -2.91 -0.02 4.45 16 7 C 0.01 0.35 4.87 84.92 0.41 0.76 16 8 N -0.87 -43.17 9.48 21.66 0.21 -42.96 16 9 Si 0.99 40.82 29.60 68.60 2.03 42.85 16 10 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.44 21.24 7.64 87.66 0.67 21.91 16 14 O -0.62 -36.22 16.15 15.98 0.26 -35.97 16 15 C 0.06 2.26 3.82 71.24 0.27 2.53 16 16 O -0.31 -11.64 9.66 -72.99 -0.71 -12.35 16 17 C 0.14 3.93 6.69 22.55 0.15 4.08 16 18 C -0.16 -4.19 9.97 22.34 0.22 -3.97 16 19 C -0.03 -0.67 9.70 22.46 0.22 -0.46 16 20 C -0.07 -1.63 5.88 -20.03 -0.12 -1.75 16 21 C 0.22 4.69 7.93 137.37 1.09 5.78 16 22 N -0.30 -6.63 12.23 -52.19 -0.64 -7.27 16 23 N -0.06 -1.03 13.47 37.02 0.50 -0.53 16 24 N -0.20 -2.38 7.90 37.02 0.29 -2.09 16 25 H 0.49 0.74 8.96 -347.54 -3.12 -2.37 16 26 N -0.30 -5.13 12.08 -52.14 -0.63 -5.76 16 27 C -0.03 -0.59 9.69 22.46 0.22 -0.37 16 28 C -0.21 -4.92 9.02 22.34 0.20 -4.72 16 29 H 0.23 6.51 7.80 -4.41 -0.03 6.48 16 30 H 0.10 4.24 6.44 -2.39 -0.02 4.22 16 31 H 0.11 3.18 6.69 -2.39 -0.02 3.17 16 32 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 33 H 0.11 3.16 6.93 -2.39 -0.02 3.14 16 34 H 0.10 3.16 7.02 -2.39 -0.02 3.14 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.15 2.94 7.88 -2.91 -0.02 2.91 16 37 H 0.16 2.46 7.88 -2.91 -0.02 2.44 16 38 H 0.15 3.00 6.28 -2.91 -0.02 2.98 16 Total: -1.00 -75.06 343.69 3.97 -71.10 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -1.97 Total: 14.89 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.31 Total: 1.49 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.95 Total: -82.02 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.45 Total: -48.31 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -75.06 3.97 -71.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.143 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds