Wall clock time and date at job start Tue Mar 31 2020 15:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47026 * 202.11166 * 3 2 1 5 5 C 1.36877 * 119.99761 * 263.98036 * 4 3 2 6 6 H 1.08004 * 119.99863 * 197.58742 * 5 4 3 7 7 C 1.39029 * 120.00359 * 17.58875 * 5 4 3 8 8 N 1.31374 * 119.99863 * 13.69624 * 7 5 4 9 9 Si 1.86799 * 120.00174 * 193.68875 * 7 5 4 10 10 H 1.48493 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47146 * 120.00147 * 9 7 5 12 12 H 1.48505 * 109.47500 * 239.99859 * 9 7 5 13 13 C 1.34776 * 119.99908 * 83.97674 * 4 3 2 14 14 O 1.21635 * 120.00034 * 5.07675 * 13 4 3 15 15 C 1.47318 * 119.99824 * 185.08279 * 13 4 3 16 16 C 1.39864 * 120.08253 * 43.99369 * 15 13 4 17 17 C 1.36516 * 120.14779 * 180.02562 * 16 15 13 18 18 C 1.39631 * 120.31947 * 0.02562 * 17 16 15 19 19 C 1.48366 * 119.91956 * 179.97438 * 18 17 16 20 20 N 1.34082 * 126.67571 * 179.68632 * 19 18 17 21 21 N 1.28988 * 107.26426 * 179.89302 * 20 19 18 22 22 N 1.28733 * 108.95400 * 0.37571 * 21 20 19 23 23 H 0.96996 * 125.33890 * 179.78307 * 22 21 20 24 24 N 1.28876 * 109.32745 * 359.75732 * 22 21 20 25 25 C 1.39226 * 120.15485 * 0.02562 * 18 17 16 26 26 C 1.38447 * 119.84990 * 359.97438 * 25 18 17 27 27 O 1.35668 * 120.15757 * 180.02562 * 26 25 18 28 28 C 1.42900 * 116.99802 * 359.97247 * 27 26 25 29 29 H 4.40641 * 5.51344 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47273 * 82.11420 * 3 2 1 31 31 H 1.09004 * 109.47611 * 322.10878 * 3 2 1 32 32 H 0.97005 * 119.99970 * 180.02562 * 8 7 5 33 33 H 1.07995 * 119.92441 * 0.03042 * 16 15 13 34 34 H 1.08004 * 119.83719 * 179.74528 * 17 16 15 35 35 H 1.07999 * 120.07020 * 179.97438 * 25 18 17 36 36 H 1.09002 * 109.47547 * 180.02562 * 28 27 26 37 37 H 1.08999 * 109.47432 * 300.00097 * 28 27 26 38 38 H 1.08998 * 109.47678 * 60.00240 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2805 0.5199 5 6 3.4786 2.2838 -0.3450 6 1 4.0928 3.1039 -0.0034 7 6 3.0383 2.2472 -1.6632 8 7 2.0852 1.4141 -2.0145 9 14 3.8018 3.3828 -2.9348 10 1 4.8469 4.2172 -2.2894 11 1 4.4150 2.5722 -4.0177 12 1 2.7508 4.2611 -3.5087 13 6 3.2428 1.4701 1.8498 14 8 3.0251 0.5501 2.6151 15 6 3.6256 2.7916 2.3765 16 6 3.0466 3.9507 1.8499 17 6 3.4007 5.1760 2.3366 18 6 4.3425 5.2819 3.3620 19 6 4.7213 6.6180 3.8840 20 7 5.6003 6.8756 4.8631 21 7 5.6436 8.1562 5.0115 22 7 4.8287 8.7016 4.1774 23 1 4.6715 9.6546 4.0883 24 7 4.2549 7.7830 3.4791 25 6 4.9278 4.1365 3.8951 26 6 4.5736 2.8905 3.4065 27 8 5.1396 1.7703 3.9217 28 6 6.0960 1.9492 4.9683 29 1 -1.0502 -0.0005 0.0000 30 1 3.0094 -0.1402 -1.0180 31 1 3.0098 -0.8102 0.6312 32 1 1.7782 1.3883 -2.9343 33 1 2.3178 3.8762 1.0564 34 1 2.9536 6.0681 1.9234 35 1 5.6564 4.2200 4.6879 36 1 6.4703 0.9769 5.2887 37 1 6.9253 2.5549 4.6030 38 1 5.6224 2.4523 5.8113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:10 Heat of formation + Delta-G solvation = 160.657492 kcal Electronic energy + Delta-G solvation = -27109.916533 eV Core-core repulsion = 23151.968095 eV Total energy + Delta-G solvation = -3957.948437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.49733 -40.06797 -38.29024 -37.13406 -35.06282 -34.41639 -33.46874 -31.94915 -31.48376 -30.42482 -29.87903 -27.17600 -26.56644 -25.25858 -24.67499 -24.01630 -21.92637 -21.50412 -19.56804 -19.29727 -18.25600 -17.46498 -17.19198 -16.87543 -16.15909 -15.78036 -15.36416 -15.08635 -14.69212 -14.33795 -14.13485 -13.93839 -13.83002 -13.22146 -12.99406 -12.71411 -12.45948 -12.13406 -11.98459 -11.94191 -11.53494 -11.45493 -11.40062 -11.24526 -11.13688 -11.05840 -10.88862 -10.73721 -10.45820 -10.27010 -9.43012 -9.32536 -8.72007 -8.57378 -8.35977 -7.94160 -7.79804 -6.41295 -3.98763 0.71818 1.14414 1.80518 2.15729 2.37497 3.06792 3.18123 3.21549 3.57934 3.67420 3.71980 3.88457 4.10262 4.19193 4.26014 4.30887 4.83961 5.01056 5.13242 5.25314 5.29680 5.38469 5.39543 5.48233 5.66801 5.69027 5.70624 5.86349 6.10454 6.17083 6.28471 6.49079 6.62486 6.74637 6.82448 6.98582 7.08492 7.20235 7.33255 7.61031 7.73605 8.08346 8.30063 8.96626 8.99876 9.39017 9.80929 10.56367 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004276 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.854312 B = 6546.405084 C = 7909.713663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.095 4.095 3 C 0.238 3.762 4 N -0.429 5.429 5 C -0.336 4.336 6 H 0.105 0.895 7 C 0.037 3.963 8 N -0.855 5.855 9 Si 0.918 3.082 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.500 3.500 14 O -0.584 6.584 15 C -0.092 4.092 16 C -0.037 4.037 17 C -0.127 4.127 18 C 0.011 3.989 19 C 0.230 3.770 20 N -0.270 5.270 21 N -0.056 5.056 22 N -0.231 5.231 23 H 0.474 0.526 24 N -0.292 5.292 25 C -0.177 4.177 26 C 0.156 3.844 27 O -0.288 6.288 28 C 0.024 3.976 29 H 0.197 0.803 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.271 0.729 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 10.581 7.368 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.097 4.097 3 C 0.116 3.884 4 N -0.146 5.146 5 C -0.463 4.463 6 H 0.122 0.878 7 C -0.169 4.169 8 N -0.492 5.492 9 Si 0.744 3.256 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.289 3.711 14 O -0.469 6.469 15 C -0.097 4.097 16 C -0.056 4.056 17 C -0.147 4.147 18 C 0.007 3.993 19 C -0.049 4.049 20 N -0.144 5.144 21 N -0.051 5.051 22 N -0.077 5.077 23 H 0.328 0.672 24 N -0.143 5.143 25 C -0.198 4.198 26 C 0.108 3.892 27 O -0.200 6.200 28 C -0.071 4.071 29 H 0.215 0.785 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.065 10.266 7.879 13.897 hybrid contribution -0.129 1.350 -1.068 1.726 sum 4.936 11.616 6.811 14.342 Atomic orbital electron populations 1.24200 0.95326 1.03497 1.06625 1.23171 0.94318 0.97112 0.95088 1.18196 0.84087 0.85470 1.00620 1.43566 1.54847 1.12496 1.03739 1.19829 1.30932 1.04297 0.91286 0.87752 1.25302 0.95152 0.97918 0.98528 1.70049 1.23945 1.36211 1.19013 0.85990 0.79167 0.79858 0.80548 1.19103 1.20466 1.20638 1.17702 0.83586 0.87180 0.82602 1.90676 1.56276 1.42802 1.57174 1.19644 0.97811 0.95819 0.96392 1.21119 0.97782 0.89620 0.97059 1.20698 0.98524 0.98580 0.96928 1.16982 0.99144 0.85368 0.97788 1.23774 0.94145 0.93443 0.93573 1.76079 1.18161 1.03884 1.16238 1.78866 1.10993 1.02761 1.12469 1.47721 1.25767 1.12102 1.22094 0.67228 1.75002 1.21797 0.97586 1.19920 1.20993 1.04490 0.90469 1.03891 1.18812 0.92509 0.85111 0.92725 1.86285 1.54629 1.28487 1.50580 1.23077 0.91168 1.03519 0.89386 0.78545 0.86587 0.91602 0.91834 0.82817 0.84970 0.84314 0.88394 0.92827 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.22 19.25 29.55 0.57 -5.65 16 2 C -0.10 -2.33 11.65 -37.12 -0.43 -2.76 16 3 C 0.24 5.77 5.10 -6.83 -0.03 5.74 16 4 N -0.43 -10.63 2.60 -119.20 -0.31 -10.94 16 5 C -0.34 -8.05 7.58 -15.01 -0.11 -8.16 16 6 H 0.10 2.42 5.86 -52.48 -0.31 2.11 16 7 C 0.04 0.87 5.07 -17.45 -0.09 0.78 16 8 N -0.86 -21.09 9.06 55.50 0.50 -20.59 16 9 Si 0.92 18.62 29.57 -169.99 -5.03 13.59 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.50 12.38 6.93 -12.57 -0.09 12.29 16 14 O -0.58 -15.88 15.96 -8.42 -0.13 -16.01 16 15 C -0.09 -1.95 5.04 -104.81 -0.53 -2.48 16 16 C -0.04 -0.70 7.60 -39.59 -0.30 -1.00 16 17 C -0.13 -2.05 9.62 -39.68 -0.38 -2.43 16 18 C 0.01 0.18 5.88 -104.84 -0.62 -0.44 16 19 C 0.23 3.34 7.93 -156.28 -1.24 2.10 16 20 N -0.27 -3.85 12.22 32.15 0.39 -3.45 16 21 N -0.06 -0.66 13.47 60.35 0.81 0.16 16 22 N -0.23 -2.14 7.90 60.35 0.48 -1.66 16 23 H 0.47 1.92 8.96 -340.36 -3.05 -1.13 16 24 N -0.29 -3.64 12.06 32.16 0.39 -3.25 16 25 C -0.18 -2.86 8.68 -39.14 -0.34 -3.20 16 26 C 0.16 2.97 6.67 -38.72 -0.26 2.71 16 27 O -0.29 -5.45 9.38 -32.37 -0.30 -5.75 16 28 C 0.02 0.31 9.81 101.05 0.99 1.30 16 29 H 0.20 3.59 7.80 -54.08 -0.42 3.17 16 30 H 0.12 2.82 6.17 -51.93 -0.32 2.50 16 31 H 0.07 1.55 7.54 -51.93 -0.39 1.16 16 32 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 33 H 0.15 3.03 6.91 -52.49 -0.36 2.67 16 34 H 0.13 1.87 7.86 -52.48 -0.41 1.46 16 35 H 0.14 1.95 6.12 -52.49 -0.32 1.63 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 38 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -32.00 339.33 -6.89 -38.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.94 Total: 5.12 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.86 Total: -1.21 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 2.26 Total: -39.73 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.44 Total: -21.77 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.00 -6.89 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.543 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds