Wall clock time and date at job start Tue Mar 31 2020 15:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47026 * 202.11166 * 3 2 1 5 5 C 1.36877 * 119.99761 * 263.98036 * 4 3 2 6 6 H 1.08004 * 119.99863 * 197.58742 * 5 4 3 7 7 C 1.39029 * 120.00359 * 17.58875 * 5 4 3 8 8 N 1.31374 * 119.99863 * 13.69624 * 7 5 4 9 9 Si 1.86799 * 120.00174 * 193.68875 * 7 5 4 10 10 H 1.48493 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47146 * 120.00147 * 9 7 5 12 12 H 1.48505 * 109.47500 * 239.99859 * 9 7 5 13 13 C 1.34776 * 119.99908 * 83.97674 * 4 3 2 14 14 O 1.21635 * 120.00034 * 5.07675 * 13 4 3 15 15 C 1.47318 * 119.99824 * 185.08279 * 13 4 3 16 16 C 1.39864 * 120.08253 * 43.99369 * 15 13 4 17 17 C 1.36516 * 120.14779 * 180.02562 * 16 15 13 18 18 C 1.39631 * 120.31947 * 0.02562 * 17 16 15 19 19 C 1.48366 * 119.91956 * 179.97438 * 18 17 16 20 20 N 1.34082 * 126.67571 * 179.68632 * 19 18 17 21 21 N 1.28988 * 107.26426 * 179.89302 * 20 19 18 22 22 N 1.28733 * 108.95400 * 0.37571 * 21 20 19 23 23 H 0.96996 * 125.33890 * 179.78307 * 22 21 20 24 24 N 1.28876 * 109.32745 * 359.75732 * 22 21 20 25 25 C 1.39226 * 120.15485 * 0.02562 * 18 17 16 26 26 C 1.38447 * 119.84990 * 359.97438 * 25 18 17 27 27 O 1.35668 * 120.15757 * 180.02562 * 26 25 18 28 28 C 1.42900 * 116.99802 * 359.97247 * 27 26 25 29 29 H 4.40641 * 5.51344 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47273 * 82.11420 * 3 2 1 31 31 H 1.09004 * 109.47611 * 322.10878 * 3 2 1 32 32 H 0.97005 * 119.99970 * 180.02562 * 8 7 5 33 33 H 1.07995 * 119.92441 * 0.03042 * 16 15 13 34 34 H 1.08004 * 119.83719 * 179.74528 * 17 16 15 35 35 H 1.07999 * 120.07020 * 179.97438 * 25 18 17 36 36 H 1.09002 * 109.47547 * 180.02562 * 28 27 26 37 37 H 1.08999 * 109.47432 * 300.00097 * 28 27 26 38 38 H 1.08998 * 109.47678 * 60.00240 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2805 0.5199 5 6 3.4786 2.2838 -0.3450 6 1 4.0928 3.1039 -0.0034 7 6 3.0383 2.2472 -1.6632 8 7 2.0852 1.4141 -2.0145 9 14 3.8018 3.3828 -2.9348 10 1 4.8469 4.2172 -2.2894 11 1 4.4150 2.5722 -4.0177 12 1 2.7508 4.2611 -3.5087 13 6 3.2428 1.4701 1.8498 14 8 3.0251 0.5501 2.6151 15 6 3.6256 2.7916 2.3765 16 6 3.0466 3.9507 1.8499 17 6 3.4007 5.1760 2.3366 18 6 4.3425 5.2819 3.3620 19 6 4.7213 6.6180 3.8840 20 7 5.6003 6.8756 4.8631 21 7 5.6436 8.1562 5.0115 22 7 4.8287 8.7016 4.1774 23 1 4.6715 9.6546 4.0883 24 7 4.2549 7.7830 3.4791 25 6 4.9278 4.1365 3.8951 26 6 4.5736 2.8905 3.4065 27 8 5.1396 1.7703 3.9217 28 6 6.0960 1.9492 4.9683 29 1 -1.0502 -0.0005 0.0000 30 1 3.0094 -0.1402 -1.0180 31 1 3.0098 -0.8102 0.6312 32 1 1.7782 1.3883 -2.9343 33 1 2.3178 3.8762 1.0564 34 1 2.9536 6.0681 1.9234 35 1 5.6564 4.2200 4.6879 36 1 6.4703 0.9769 5.2887 37 1 6.9253 2.5549 4.6030 38 1 5.6224 2.4523 5.8113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588350328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:09 Heat of formation + Delta-G solvation = 140.206204 kcal Electronic energy + Delta-G solvation = -27110.803367 eV Core-core repulsion = 23151.968095 eV Total energy + Delta-G solvation = -3958.835272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.47198 -41.53258 -39.98638 -38.48001 -36.94839 -35.43308 -34.60403 -33.75462 -33.24287 -31.82448 -31.20868 -28.57426 -28.05144 -26.92314 -25.72374 -25.42218 -23.19753 -22.80835 -21.28482 -20.30007 -19.90806 -18.94645 -18.44447 -18.14907 -17.94984 -17.14205 -16.65733 -16.43129 -16.28880 -16.05960 -15.67690 -15.36747 -15.18902 -14.61301 -14.51557 -14.13028 -13.84634 -13.67667 -13.66054 -13.32772 -13.11714 -12.78891 -12.60864 -12.52066 -12.46174 -12.30714 -12.22260 -12.10434 -12.04051 -11.51570 -11.24104 -11.18780 -10.57476 -10.38269 -9.83377 -9.76631 -9.18261 -8.22184 -5.86670 -0.52019 0.14532 0.44993 1.14042 1.40991 1.46237 1.51816 1.63262 1.97919 2.13376 2.36444 2.38077 2.44338 2.60879 2.77765 3.09901 3.13972 3.25481 3.89984 3.93135 3.96860 4.14692 4.26938 4.29001 4.42434 4.44181 4.49278 4.60097 4.75150 4.78934 4.87282 5.04484 5.17141 5.31202 5.41797 5.43480 5.47800 5.62488 5.70591 5.76947 6.42401 6.48422 7.09870 7.12443 7.15805 7.53805 7.95720 8.75827 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004276 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.854312 B = 6546.405084 C = 7909.713663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.143 4.143 3 C 0.241 3.759 4 N -0.438 5.438 5 C -0.347 4.347 6 H 0.110 0.890 7 C 0.001 3.999 8 N -0.879 5.879 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.491 3.509 14 O -0.623 6.623 15 C -0.133 4.133 16 C -0.037 4.037 17 C -0.120 4.120 18 C 0.026 3.974 19 C 0.212 3.788 20 N -0.287 5.287 21 N -0.053 5.053 22 N -0.198 5.198 23 H 0.496 0.504 24 N -0.286 5.286 25 C -0.168 4.168 26 C 0.153 3.847 27 O -0.323 6.323 28 C 0.014 3.986 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.271 0.729 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 13.714 7.865 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.154 5.154 5 C -0.474 4.474 6 H 0.127 0.873 7 C -0.202 4.202 8 N -0.516 5.516 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.281 3.719 14 O -0.511 6.511 15 C -0.137 4.137 16 C -0.056 4.056 17 C -0.140 4.140 18 C 0.022 3.978 19 C -0.068 4.068 20 N -0.159 5.159 21 N -0.048 5.048 22 N -0.049 5.049 23 H 0.355 0.645 24 N -0.139 5.139 25 C -0.189 4.189 26 C 0.106 3.894 27 O -0.235 6.235 28 C -0.080 4.080 29 H 0.253 0.747 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.721 13.432 8.386 16.837 hybrid contribution -0.322 0.507 -1.109 1.261 sum 5.400 13.939 7.277 16.625 Atomic orbital electron populations 1.25127 0.96319 1.01552 1.04631 1.23485 0.95053 0.98991 0.96956 1.18074 0.84708 0.85533 0.99858 1.43762 1.54783 1.12697 1.04145 1.20043 1.31320 1.04519 0.91559 0.87286 1.26042 0.95220 0.99162 0.99752 1.70165 1.24840 1.37417 1.19211 0.85008 0.78342 0.78025 0.77919 1.18371 1.20581 1.20463 1.18300 0.82948 0.88297 0.82308 1.90610 1.58008 1.44515 1.57972 1.19529 1.00787 0.94583 0.98821 1.20935 0.97629 0.90086 0.96929 1.20806 0.98334 0.98090 0.96758 1.17096 0.97776 0.86247 0.96682 1.23477 0.95389 0.93286 0.94609 1.76071 1.18485 1.04933 1.16444 1.78832 1.11226 1.02062 1.12679 1.47789 1.23890 1.12925 1.20273 0.64496 1.74956 1.21557 0.97452 1.19908 1.21137 1.04465 0.89328 1.03947 1.18885 0.92171 0.86184 0.92201 1.86239 1.55838 1.29322 1.52141 1.23429 0.90726 1.05314 0.88532 0.74728 0.87358 0.92404 0.91891 0.84370 0.82660 0.82050 0.86679 0.91062 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.55 19.25 74.32 1.43 -10.12 16 2 C -0.14 -7.22 11.65 31.12 0.36 -6.86 16 3 C 0.24 12.29 5.10 84.57 0.43 12.72 16 4 N -0.44 -22.66 2.60 -649.27 -1.69 -24.35 16 5 C -0.35 -17.09 7.58 84.10 0.64 -16.45 16 6 H 0.11 5.15 5.86 -2.91 -0.02 5.13 16 7 C 0.00 0.07 5.07 84.95 0.43 0.50 16 8 N -0.88 -44.15 9.06 21.68 0.20 -43.95 16 9 Si 0.98 38.11 29.57 68.60 2.03 40.14 16 10 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 13 C 0.49 25.51 6.93 86.63 0.60 26.11 16 14 O -0.62 -35.76 15.96 8.93 0.14 -35.62 16 15 C -0.13 -5.80 5.04 -19.99 -0.10 -5.91 16 16 C -0.04 -1.41 7.60 22.26 0.17 -1.24 16 17 C -0.12 -3.70 9.62 22.20 0.21 -3.49 16 18 C 0.03 0.76 5.88 -20.01 -0.12 0.64 16 19 C 0.21 5.54 7.93 137.33 1.09 6.62 16 20 N -0.29 -7.29 12.22 -52.21 -0.64 -7.93 16 21 N -0.05 -1.07 13.47 37.02 0.50 -0.57 16 22 N -0.20 -2.90 7.90 37.02 0.29 -2.61 16 23 H 0.50 1.95 8.96 -347.53 -3.12 -1.17 16 24 N -0.29 -6.12 12.06 -52.16 -0.63 -6.75 16 25 C -0.17 -5.18 8.68 22.56 0.20 -4.99 16 26 C 0.15 5.86 6.67 22.83 0.15 6.02 16 27 O -0.32 -12.39 9.38 -76.78 -0.72 -13.11 16 28 C 0.01 0.34 9.81 113.37 1.11 1.46 16 29 H 0.24 8.14 7.80 -4.41 -0.03 8.11 16 30 H 0.11 5.58 6.17 -2.39 -0.01 5.56 16 31 H 0.06 2.94 7.54 -2.39 -0.02 2.93 16 32 H 0.27 12.96 8.31 -92.70 -0.77 12.19 16 33 H 0.14 5.62 6.91 -2.91 -0.02 5.60 16 34 H 0.16 4.01 7.86 -2.91 -0.02 3.99 16 35 H 0.16 4.16 6.12 -2.91 -0.02 4.15 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 38 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 Total: -1.00 -71.21 339.33 4.13 -67.09 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -1.97 Total: 22.64 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.61 Total: 5.03 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.97 Total: -86.16 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.58 Total: -48.73 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -71.21 4.13 -67.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.294 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds