Wall clock time and date at job start Tue Mar 31 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.50703 * 109.47410 * 119.99707 * 2 1 3 5 5 O 1.21297 * 119.99613 * 82.80359 * 4 2 1 6 6 N 1.34776 * 120.00546 * 262.80723 * 4 2 1 7 7 C 1.37101 * 119.99751 * 4.82469 * 6 4 2 8 8 H 1.08000 * 119.99736 * 40.91202 * 7 6 4 9 9 C 1.38942 * 120.00002 * 220.63090 * 7 6 4 10 10 N 1.31420 * 119.99779 * 210.51125 * 9 7 6 11 11 Si 1.86792 * 120.00328 * 30.51712 * 9 7 6 12 12 H 1.48503 * 109.47613 * 88.96555 * 11 9 7 13 13 H 1.48505 * 109.47391 * 208.96604 * 11 9 7 14 14 H 1.48500 * 109.47120 * 328.96722 * 11 9 7 15 15 C 1.46498 * 120.00124 * 184.83100 * 6 4 2 16 16 C 1.52999 * 109.47123 * 275.48844 * 15 6 4 17 17 C 1.50700 * 109.47117 * 180.02562 * 16 15 6 18 18 O 1.20826 * 120.00090 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99789 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.47610 * 240.00251 * 2 1 3 21 21 C 1.38257 * 119.97052 * 119.99370 * 20 2 1 22 22 C 1.38203 * 120.07418 * 180.02562 * 21 20 2 23 23 C 1.38414 * 120.00124 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.03599 * 180.02562 * 23 22 21 25 25 C 1.38645 * 119.92767 * 0.02562 * 23 22 21 26 26 F 1.35099 * 120.03552 * 179.97438 * 25 23 22 27 27 C 1.38215 * 119.96141 * 299.72950 * 20 2 1 28 28 H 1.09010 * 109.46506 * 179.64282 * 1 2 3 29 29 H 1.09003 * 109.47360 * 299.63275 * 1 2 3 30 30 H 1.08998 * 109.47441 * 59.64503 * 1 2 3 31 31 H 0.96992 * 119.99783 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.47057 * 35.49026 * 15 6 4 33 33 H 1.09000 * 109.47236 * 155.48769 * 15 6 4 34 34 H 1.09001 * 109.46859 * 299.99845 * 16 15 6 35 35 H 1.09000 * 109.47125 * 59.99857 * 16 15 6 36 36 H 0.96697 * 116.99718 * 179.97438 * 19 17 16 37 37 H 1.08004 * 119.95850 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99981 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00060 * 359.96667 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1105 -1.9207 1.2426 6 7 2.3948 -0.0008 2.3175 7 6 2.2140 1.3580 2.3408 8 1 1.3104 1.7895 1.9362 9 6 3.1907 2.1795 2.8901 10 7 2.8505 3.3127 3.4621 11 14 4.9872 1.6734 2.8155 12 1 5.5919 2.1780 1.5565 13 1 5.7120 2.2475 3.9775 14 1 5.0861 0.1921 2.8530 15 6 2.9821 -0.6815 3.4742 16 6 1.8651 -1.2234 4.3684 17 6 2.4693 -1.9231 5.5586 18 8 3.6700 -1.9827 5.6790 19 8 1.6734 -2.4810 6.4843 20 6 2.0324 -0.7103 -1.2304 21 6 2.8271 -0.0377 -2.1401 22 6 3.2887 -0.6869 -3.2695 23 6 2.9549 -2.0118 -3.4912 24 9 3.4061 -2.6472 -4.5948 25 6 2.1571 -2.6860 -2.5796 26 9 1.8295 -3.9790 -2.7941 27 6 1.7027 -2.0352 -1.4456 28 1 -0.3633 -1.0278 -0.0064 29 1 -0.3634 0.5081 0.8933 30 1 -0.3634 0.5193 -0.8867 31 1 3.5323 3.8860 3.8459 32 1 3.6061 -1.5070 3.1317 33 1 3.5909 0.0235 4.0403 34 1 1.2412 -0.3979 4.7109 35 1 1.2564 -1.9285 3.8023 36 1 2.1068 -2.9190 7.2295 37 1 3.0869 0.9965 -1.9682 38 1 3.9091 -0.1602 -3.9795 39 1 1.0858 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589342194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:04 Heat of formation + Delta-G solvation = -190.356139 kcal Electronic energy + Delta-G solvation = -28108.542430 eV Core-core repulsion = 23652.390962 eV Total energy + Delta-G solvation = -4456.151468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.29577 -48.37114 -40.11215 -39.69621 -38.26959 -35.99567 -35.22462 -33.57419 -32.39073 -30.90439 -30.54768 -28.88345 -25.23325 -25.15026 -23.81370 -22.93245 -21.60442 -20.68691 -19.11450 -17.99897 -17.77067 -17.29180 -17.06306 -16.45654 -16.29778 -16.17542 -16.08756 -15.54813 -15.01693 -14.80139 -14.56591 -14.34944 -14.04814 -13.84003 -13.69953 -13.27691 -13.21623 -12.86279 -12.76376 -12.49387 -12.33185 -12.10442 -11.81105 -11.51138 -11.40371 -11.32175 -11.08459 -10.92904 -10.88317 -10.76696 -10.36553 -10.30300 -9.96121 -9.34053 -8.85796 -8.78864 -8.36066 -7.97024 -6.72895 -4.28867 1.06176 1.20725 2.49009 3.01937 3.16078 3.20491 3.26776 3.41304 3.64416 3.95147 4.02980 4.29581 4.48570 4.68051 4.73606 4.88578 5.15219 5.33901 5.38048 5.50721 5.59972 5.66251 5.71588 5.79967 5.91142 6.05622 6.06973 6.12728 6.14902 6.18238 6.32618 6.34282 6.44737 6.54127 6.72118 6.74685 6.93626 7.14504 7.86826 8.05803 8.13311 8.77184 9.14178 9.48821 10.36249 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004246 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.597096 B = 6593.518541 C = 7697.558288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 H 0.118 0.882 4 C 0.485 3.515 5 O -0.590 6.590 6 N -0.455 5.455 7 C -0.366 4.366 8 H 0.106 0.894 9 C 0.083 3.917 10 N -0.836 5.836 11 Si 0.849 3.151 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.251 1.251 15 C 0.128 3.872 16 C -0.125 4.125 17 C 0.485 3.515 18 O -0.521 6.521 19 O -0.521 6.521 20 C -0.042 4.042 21 C -0.094 4.094 22 C -0.133 4.133 23 C 0.055 3.945 24 F -0.137 7.137 25 C 0.058 3.942 26 F -0.134 7.134 27 C -0.089 4.089 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.278 0.722 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.403 0.597 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 -4.362 -5.261 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 H 0.136 0.864 4 C 0.275 3.725 5 O -0.475 6.475 6 N -0.174 5.174 7 C -0.492 4.492 8 H 0.123 0.877 9 C -0.129 4.129 10 N -0.468 5.468 11 Si 0.673 3.327 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.175 1.175 15 C 0.005 3.995 16 C -0.164 4.164 17 C 0.327 3.673 18 O -0.409 6.409 19 O -0.332 6.332 20 C -0.043 4.043 21 C -0.112 4.112 22 C -0.151 4.151 23 C 0.035 3.965 24 F -0.115 7.115 25 C 0.038 3.962 26 F -0.113 7.113 27 C -0.108 4.108 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.261 0.739 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.872 -4.636 -5.468 7.723 hybrid contribution 1.414 -0.577 0.413 1.582 sum -1.459 -5.213 -5.055 7.406 Atomic orbital electron populations 1.21654 0.92422 1.02173 1.02649 1.20125 0.97249 1.01401 0.89701 0.86411 1.20247 0.81284 0.87062 0.83918 1.90557 1.59205 1.14295 1.83419 1.43641 1.55979 1.07443 1.10362 1.18942 1.05632 0.78866 1.45758 0.87679 1.25357 0.98827 0.94989 0.93694 1.69891 1.35116 1.12919 1.28848 0.87385 0.85605 0.81010 0.78659 1.19841 1.20639 1.17489 1.21456 0.93290 0.97391 0.87397 1.21815 1.01753 1.01150 0.91695 1.23748 0.85282 0.75119 0.83129 1.90698 1.16790 1.56863 1.76559 1.84583 1.44714 1.68169 1.35738 1.19619 0.96144 0.93019 0.95536 1.21095 0.96411 1.00914 0.92779 1.20964 1.02321 0.92123 0.99726 1.17690 1.00888 0.92287 0.85684 1.91487 1.87547 1.82012 1.50478 1.17712 1.01753 0.79849 0.96854 1.91494 1.91132 1.33844 1.94808 1.21152 1.00360 0.94854 0.94434 0.92508 0.91178 0.92078 0.91194 0.90890 0.90371 0.86896 0.87464 0.73896 0.84003 0.84011 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.00 37.16 0.33 -1.53 16 2 C -0.06 -1.06 2.26 -92.93 -0.21 -1.27 16 3 H 0.12 1.98 6.45 -51.93 -0.33 1.64 16 4 C 0.49 9.77 6.55 -10.98 -0.07 9.70 16 5 O -0.59 -12.86 14.25 5.54 0.08 -12.78 16 6 N -0.45 -9.65 2.09 -114.81 -0.24 -9.89 16 7 C -0.37 -8.25 8.26 -14.93 -0.12 -8.37 16 8 H 0.11 2.42 7.40 -52.49 -0.39 2.03 16 9 C 0.08 1.96 5.05 -17.47 -0.09 1.87 16 10 N -0.84 -20.83 13.96 55.50 0.77 -20.06 16 11 Si 0.85 18.79 26.49 -169.99 -4.50 14.29 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.25 -5.65 5.62 56.52 0.32 -5.34 16 15 C 0.13 2.68 2.73 -4.04 -0.01 2.67 16 16 C -0.13 -2.21 6.10 -27.88 -0.17 -2.38 16 17 C 0.48 8.14 8.33 36.01 0.30 8.44 16 18 O -0.52 -10.23 16.74 -18.75 -0.31 -10.55 16 19 O -0.52 -6.81 13.42 -39.26 -0.53 -7.34 16 20 C -0.04 -0.66 4.73 -104.62 -0.50 -1.15 16 21 C -0.09 -1.27 9.67 -39.59 -0.38 -1.65 16 22 C -0.13 -1.70 10.02 -39.53 -0.40 -2.10 16 23 C 0.05 0.81 7.31 -39.37 -0.29 0.52 16 24 F -0.14 -2.04 17.18 2.25 0.04 -2.00 16 25 C 0.06 0.93 7.31 -39.36 -0.29 0.64 16 26 F -0.13 -2.20 17.18 2.25 0.04 -2.16 16 27 C -0.09 -1.43 8.01 -39.52 -0.32 -1.75 16 28 H 0.06 0.79 7.39 -51.92 -0.38 0.41 16 29 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.07 1.61 7.59 -51.93 -0.39 1.21 16 33 H 0.08 1.72 4.72 -51.93 -0.25 1.48 16 34 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 35 H 0.11 1.84 8.05 -51.93 -0.42 1.42 16 36 H 0.40 3.35 9.10 45.56 0.41 3.77 16 37 H 0.14 1.65 7.94 -52.48 -0.42 1.23 16 38 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.15 2.54 6.62 -52.49 -0.35 2.19 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -28.35 342.35 -5.11 -33.47 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.41 Total: 8.24 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.21 Total: 3.62 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.53 Total: -29.95 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.76 Total: -30.67 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.50 Total: 14.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.35 -5.11 -33.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.889 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds