Wall clock time and date at job start Tue Mar 31 2020 15:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.50703 * 109.47410 * 119.99707 * 2 1 3 5 5 O 1.21297 * 119.99613 * 82.80359 * 4 2 1 6 6 N 1.34776 * 120.00546 * 262.80723 * 4 2 1 7 7 C 1.37101 * 119.99751 * 4.82469 * 6 4 2 8 8 H 1.08000 * 119.99736 * 40.91202 * 7 6 4 9 9 C 1.38942 * 120.00002 * 220.63090 * 7 6 4 10 10 N 1.31420 * 119.99779 * 210.51125 * 9 7 6 11 11 Si 1.86792 * 120.00328 * 30.51712 * 9 7 6 12 12 H 1.48503 * 109.47613 * 88.96555 * 11 9 7 13 13 H 1.48505 * 109.47391 * 208.96604 * 11 9 7 14 14 H 1.48500 * 109.47120 * 328.96722 * 11 9 7 15 15 C 1.46498 * 120.00124 * 184.83100 * 6 4 2 16 16 C 1.52999 * 109.47123 * 275.48844 * 15 6 4 17 17 C 1.50700 * 109.47117 * 180.02562 * 16 15 6 18 18 O 1.20826 * 120.00090 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99789 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.47610 * 240.00251 * 2 1 3 21 21 C 1.38257 * 119.97052 * 119.99370 * 20 2 1 22 22 C 1.38203 * 120.07418 * 180.02562 * 21 20 2 23 23 C 1.38414 * 120.00124 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.03599 * 180.02562 * 23 22 21 25 25 C 1.38645 * 119.92767 * 0.02562 * 23 22 21 26 26 F 1.35099 * 120.03552 * 179.97438 * 25 23 22 27 27 C 1.38215 * 119.96141 * 299.72950 * 20 2 1 28 28 H 1.09010 * 109.46506 * 179.64282 * 1 2 3 29 29 H 1.09003 * 109.47360 * 299.63275 * 1 2 3 30 30 H 1.08998 * 109.47441 * 59.64503 * 1 2 3 31 31 H 0.96992 * 119.99783 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.47057 * 35.49026 * 15 6 4 33 33 H 1.09000 * 109.47236 * 155.48769 * 15 6 4 34 34 H 1.09001 * 109.46859 * 299.99845 * 16 15 6 35 35 H 1.09000 * 109.47125 * 59.99857 * 16 15 6 36 36 H 0.96697 * 116.99718 * 179.97438 * 19 17 16 37 37 H 1.08004 * 119.95850 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99981 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00060 * 359.96667 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1105 -1.9207 1.2426 6 7 2.3948 -0.0008 2.3175 7 6 2.2140 1.3580 2.3408 8 1 1.3104 1.7895 1.9362 9 6 3.1907 2.1795 2.8901 10 7 2.8505 3.3127 3.4621 11 14 4.9872 1.6734 2.8155 12 1 5.5919 2.1780 1.5565 13 1 5.7120 2.2475 3.9775 14 1 5.0861 0.1921 2.8530 15 6 2.9821 -0.6815 3.4742 16 6 1.8651 -1.2234 4.3684 17 6 2.4693 -1.9231 5.5586 18 8 3.6700 -1.9827 5.6790 19 8 1.6734 -2.4810 6.4843 20 6 2.0324 -0.7103 -1.2304 21 6 2.8271 -0.0377 -2.1401 22 6 3.2887 -0.6869 -3.2695 23 6 2.9549 -2.0118 -3.4912 24 9 3.4061 -2.6472 -4.5948 25 6 2.1571 -2.6860 -2.5796 26 9 1.8295 -3.9790 -2.7941 27 6 1.7027 -2.0352 -1.4456 28 1 -0.3633 -1.0278 -0.0064 29 1 -0.3634 0.5081 0.8933 30 1 -0.3634 0.5193 -0.8867 31 1 3.5323 3.8860 3.8459 32 1 3.6061 -1.5070 3.1317 33 1 3.5909 0.0235 4.0403 34 1 1.2412 -0.3979 4.7109 35 1 1.2564 -1.9285 3.8023 36 1 2.1068 -2.9190 7.2295 37 1 3.0869 0.9965 -1.9682 38 1 3.9091 -0.1602 -3.9795 39 1 1.0858 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589342194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:03 Heat of formation + Delta-G solvation = -206.121505 kcal Electronic energy + Delta-G solvation = -28109.226068 eV Core-core repulsion = 23652.390962 eV Total energy + Delta-G solvation = -4456.835106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.49130 -49.57467 -41.52913 -41.04880 -39.62104 -37.29794 -36.84057 -34.91006 -34.14260 -32.39215 -31.73087 -30.05996 -26.91326 -26.65893 -25.10800 -24.09168 -22.89107 -22.06136 -20.74754 -19.37847 -19.00523 -18.62089 -18.37654 -17.82465 -17.76380 -17.58154 -17.31990 -16.96032 -16.55901 -16.07411 -16.01221 -15.64604 -15.51424 -15.08926 -14.99258 -14.65963 -14.62293 -14.43120 -14.14771 -13.96398 -13.64038 -13.46884 -13.10971 -12.94066 -12.73502 -12.65516 -12.59557 -12.53365 -12.20807 -12.03228 -11.94379 -11.76593 -11.67549 -11.07284 -10.39153 -9.99839 -9.70981 -9.59841 -8.56162 -6.10102 -0.11104 0.07953 1.14408 1.25207 1.38043 1.46636 1.82326 1.97776 2.23865 2.38974 2.77362 2.80269 2.97628 3.32311 3.57040 3.69738 3.87617 3.94703 4.05642 4.22083 4.22563 4.38158 4.45548 4.55969 4.61505 4.72862 4.79402 4.89028 4.92258 4.97930 4.99212 5.06922 5.12822 5.30716 5.40829 5.54545 5.55130 5.78348 6.13133 6.27288 6.95798 6.99791 7.43604 7.80062 8.56269 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004246 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.597096 B = 6593.518541 C = 7697.558288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 H 0.119 0.881 4 C 0.484 3.516 5 O -0.607 6.607 6 N -0.465 5.465 7 C -0.349 4.349 8 H 0.101 0.899 9 C 0.057 3.943 10 N -0.868 5.868 11 Si 0.883 3.117 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.127 3.873 16 C -0.119 4.119 17 C 0.495 3.505 18 O -0.553 6.553 19 O -0.506 6.506 20 C -0.055 4.055 21 C -0.088 4.088 22 C -0.117 4.117 23 C 0.050 3.950 24 F -0.138 7.138 25 C 0.042 3.958 26 F -0.143 7.143 27 C -0.097 4.097 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.280 0.720 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.428 0.572 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -4.043 -6.168 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 H 0.137 0.863 4 C 0.275 3.725 5 O -0.493 6.493 6 N -0.185 5.185 7 C -0.475 4.475 8 H 0.119 0.881 9 C -0.151 4.151 10 N -0.502 5.502 11 Si 0.708 3.292 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.004 3.996 16 C -0.157 4.157 17 C 0.339 3.661 18 O -0.445 6.445 19 O -0.320 6.320 20 C -0.056 4.056 21 C -0.106 4.106 22 C -0.135 4.135 23 C 0.030 3.970 24 F -0.117 7.117 25 C 0.022 3.978 26 F -0.122 7.122 27 C -0.116 4.116 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.289 0.711 37 H 0.184 0.816 38 H 0.195 0.805 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.037 -4.338 -6.365 8.280 hybrid contribution 1.420 -0.782 0.695 1.764 sum -1.617 -5.120 -5.670 7.809 Atomic orbital electron populations 1.21641 0.90674 1.02456 1.03596 1.20121 0.98698 1.00801 0.88318 0.86338 1.20893 0.80131 0.86980 0.84536 1.90549 1.59584 1.15279 1.83876 1.43743 1.56560 1.07098 1.11110 1.18883 1.04959 0.79268 1.44408 0.88128 1.25644 1.00315 0.95062 0.94048 1.69920 1.35682 1.13969 1.30635 0.86871 0.83921 0.79876 0.78542 1.19139 1.21264 1.18649 1.21332 0.94124 0.96436 0.87750 1.21630 1.00584 1.01588 0.91943 1.23411 0.84704 0.74712 0.83305 1.90695 1.18125 1.58268 1.77390 1.84507 1.43914 1.67584 1.35957 1.19627 0.97232 0.92931 0.95772 1.21381 0.95072 1.01914 0.92192 1.21308 1.01384 0.91117 0.99732 1.17883 1.00739 0.93008 0.85403 1.91484 1.87512 1.82215 1.50475 1.17866 1.02743 0.79738 0.97474 1.91465 1.91346 1.34456 1.94892 1.21042 1.00831 0.95250 0.94493 0.92602 0.91834 0.89461 0.91036 0.92626 0.91832 0.86246 0.86937 0.71062 0.81597 0.80545 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.00 71.98 0.65 -2.73 16 2 C -0.06 -1.86 2.26 -12.29 -0.03 -1.88 16 3 H 0.12 3.75 6.45 -2.39 -0.02 3.73 16 4 C 0.48 19.21 6.55 87.66 0.57 19.78 16 5 O -0.61 -26.44 14.25 -3.08 -0.04 -26.48 16 6 N -0.47 -19.56 2.09 -635.54 -1.33 -20.89 16 7 C -0.35 -15.50 8.26 84.04 0.69 -14.81 16 8 H 0.10 4.55 7.40 -2.91 -0.02 4.53 16 9 C 0.06 2.70 5.05 84.92 0.43 3.13 16 10 N -0.87 -43.08 13.96 21.66 0.30 -42.77 16 11 Si 0.88 38.44 26.49 68.60 1.82 40.26 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.79 5.62 99.48 0.56 -11.23 16 15 C 0.13 5.34 2.73 86.38 0.24 5.58 16 16 C -0.12 -4.13 6.10 29.85 0.18 -3.95 16 17 C 0.49 16.15 8.33 71.24 0.59 16.74 16 18 O -0.55 -21.58 16.74 21.96 0.37 -21.22 16 19 O -0.51 -12.15 13.42 -51.42 -0.69 -12.84 16 20 C -0.05 -1.61 4.73 -19.87 -0.09 -1.71 16 21 C -0.09 -2.11 9.67 22.27 0.22 -1.89 16 22 C -0.12 -2.61 10.02 22.30 0.22 -2.39 16 23 C 0.05 1.37 7.31 22.41 0.16 1.53 16 24 F -0.14 -3.87 17.18 44.97 0.77 -3.10 16 25 C 0.04 1.29 7.31 22.41 0.16 1.46 16 26 F -0.14 -4.67 17.18 44.97 0.77 -3.90 16 27 C -0.10 -3.06 8.01 22.31 0.18 -2.88 16 28 H 0.05 1.50 7.39 -2.38 -0.02 1.48 16 29 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.06 2.49 7.59 -2.39 -0.02 2.47 16 33 H 0.06 2.83 4.72 -2.39 -0.01 2.82 16 34 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.11 3.79 8.05 -2.39 -0.02 3.77 16 36 H 0.43 6.00 9.10 -74.06 -0.67 5.33 16 37 H 0.17 3.20 7.94 -2.91 -0.02 3.17 16 38 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.14 4.72 6.62 -2.91 -0.02 4.70 16 Total: -1.00 -60.37 342.35 6.45 -53.92 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.30 Total: 21.05 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 4.18 Total: 15.96 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -1.03 Total: -63.67 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.37 Total: -60.54 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 1.55 Total: -7.00 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.82 Total: 40.26 kcal Total: -60.37 6.45 -53.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.198 kcal (2) G-P(sol) polarization free energy of solvation -60.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds