Wall clock time and date at job start Tue Mar 31 2020 15:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46877 * 2 1 4 4 C 1.50691 * 109.47679 * 239.99536 * 2 1 3 5 5 O 1.21292 * 120.00504 * 263.42265 * 4 2 1 6 6 N 1.34783 * 119.99816 * 83.41739 * 4 2 1 7 7 C 1.37098 * 119.99805 * 4.60023 * 6 4 2 8 8 H 1.07998 * 119.99845 * 42.58356 * 7 6 4 9 9 C 1.38952 * 119.99922 * 222.57940 * 7 6 4 10 10 N 1.31411 * 120.00005 * 17.85220 * 9 7 6 11 11 Si 1.86795 * 119.99880 * 197.85666 * 9 7 6 12 12 H 1.48499 * 109.47398 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47313 * 120.00021 * 11 9 7 14 14 H 1.48504 * 109.47163 * 239.99977 * 11 9 7 15 15 C 1.46504 * 119.99760 * 184.60291 * 6 4 2 16 16 C 1.53006 * 109.46755 * 276.10528 * 15 6 4 17 17 C 1.50704 * 109.46854 * 180.02562 * 16 15 6 18 18 O 1.20825 * 119.99793 * 0.02562 * 17 16 15 19 19 O 1.34222 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.50704 * 109.47070 * 119.99621 * 2 1 3 21 21 C 1.38258 * 119.96624 * 59.72463 * 20 2 1 22 22 C 1.38211 * 120.06894 * 179.72310 * 21 20 2 23 23 C 1.38411 * 120.00326 * 0.55616 * 22 21 20 24 24 F 1.35097 * 120.03779 * 179.74556 * 23 22 21 25 25 C 1.38650 * 119.92533 * 359.72043 * 23 22 21 26 26 F 1.35102 * 120.03142 * 180.02562 * 25 23 22 27 27 C 1.38219 * 119.96365 * 240.00418 * 20 2 1 28 28 H 1.08998 * 109.46596 * 181.06848 * 1 2 3 29 29 H 1.09003 * 109.47082 * 301.06610 * 1 2 3 30 30 H 1.09001 * 109.46747 * 61.06834 * 1 2 3 31 31 H 0.96997 * 120.00170 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.47577 * 36.10465 * 15 6 4 33 33 H 1.09002 * 109.46628 * 156.11271 * 15 6 4 34 34 H 1.09000 * 109.47408 * 300.00386 * 16 15 6 35 35 H 1.09003 * 109.46699 * 60.00447 * 16 15 6 36 36 H 0.96706 * 116.99468 * 180.02562 * 19 17 16 37 37 H 1.08002 * 119.96172 * 0.02562 * 21 20 2 38 38 H 1.08007 * 119.99467 * 180.27955 * 22 21 20 39 39 H 1.07994 * 120.00161 * 0.02562 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 8 2.3481 -1.8800 -1.1690 6 7 2.1310 -0.0463 -2.3990 7 6 1.8646 1.2977 -2.4482 8 1 2.2325 1.9499 -1.6700 9 6 1.1213 1.8206 -3.4993 10 7 0.3851 1.0255 -4.2428 11 14 1.1688 3.6536 -3.8556 12 1 2.0662 4.3243 -2.8809 13 1 1.6775 3.8772 -5.2328 14 1 -0.2001 4.2167 -3.7361 15 6 2.5227 -0.7606 -3.6166 16 6 4.0483 -0.8563 -3.6832 17 6 4.4513 -1.5905 -4.9361 18 8 3.6052 -1.9952 -5.6977 19 8 5.7502 -1.7949 -5.2057 20 6 2.0324 -0.7103 1.2305 21 6 1.6932 -2.0323 1.4516 22 6 2.1574 -2.6875 2.5765 23 6 2.9532 -2.0170 3.4891 24 9 3.4031 -2.6552 4.5915 25 6 3.2886 -0.6895 3.2703 26 9 4.0657 -0.0331 4.1593 27 6 2.8269 -0.0378 2.1399 28 1 -0.3632 -1.0275 0.0192 29 1 -0.3633 0.5303 0.8803 30 1 -0.3633 0.4972 -0.8994 31 1 -0.1341 1.3906 -4.9763 32 1 2.0960 -1.7634 -3.6028 33 1 2.1542 -0.2207 -4.4889 34 1 4.4751 0.1466 -3.6970 35 1 4.4168 -1.3961 -2.8108 36 1 5.9597 -2.2704 -6.0213 37 1 1.0689 -2.5549 0.7420 38 1 1.8955 -3.7216 2.7457 39 1 3.0870 0.9962 1.9686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589342195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:07 Heat of formation + Delta-G solvation = -197.058641 kcal Electronic energy + Delta-G solvation = -27959.233351 eV Core-core repulsion = 23502.791241 eV Total energy + Delta-G solvation = -4456.442110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.30338 -48.38348 -39.95472 -39.58811 -38.10218 -35.86509 -35.05598 -33.45695 -32.06463 -30.71243 -30.55236 -28.63747 -25.32135 -24.81433 -23.52824 -23.04666 -21.54650 -20.35418 -19.22630 -17.90737 -17.72315 -17.30499 -16.94011 -16.29179 -16.15321 -15.98352 -15.95354 -15.50665 -14.83086 -14.81415 -14.42927 -14.34055 -14.12700 -13.86568 -13.69643 -13.16131 -12.89038 -12.70375 -12.60216 -12.40716 -11.94408 -11.75914 -11.59419 -11.34017 -11.31302 -11.21082 -11.16729 -10.95251 -10.85429 -10.50711 -10.45770 -10.19553 -10.09371 -9.25740 -8.95539 -8.54044 -8.34217 -7.68239 -6.52619 -4.31138 1.12514 1.21436 2.61610 3.01546 3.14016 3.15852 3.34455 3.58347 3.71760 3.94551 4.01355 4.43376 4.60095 4.78541 4.83303 4.98176 5.22801 5.36551 5.52339 5.69113 5.71989 5.78243 5.85054 5.92365 5.98098 6.05015 6.21183 6.26571 6.29512 6.35970 6.39603 6.70790 6.76755 6.79055 6.84692 6.96935 7.17430 7.29969 7.76272 8.16999 8.25590 8.91578 9.28707 9.72649 10.50092 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.004095 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.007893 B = 6835.742811 C = 8258.255278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 H 0.102 0.898 4 C 0.483 3.517 5 O -0.596 6.596 6 N -0.433 5.433 7 C -0.353 4.353 8 H 0.091 0.909 9 C 0.052 3.948 10 N -0.851 5.851 11 Si 0.910 3.090 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.137 3.863 16 C -0.127 4.127 17 C 0.483 3.517 18 O -0.515 6.515 19 O -0.524 6.524 20 C -0.038 4.038 21 C -0.057 4.057 22 C -0.132 4.132 23 C 0.054 3.946 24 F -0.137 7.137 25 C 0.057 3.943 26 F -0.136 7.136 27 C -0.123 4.123 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.272 0.728 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -1.121 6.563 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 H 0.120 0.880 4 C 0.272 3.728 5 O -0.481 6.481 6 N -0.151 5.151 7 C -0.481 4.481 8 H 0.108 0.892 9 C -0.157 4.157 10 N -0.485 5.485 11 Si 0.736 3.264 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.013 3.987 16 C -0.166 4.166 17 C 0.325 3.675 18 O -0.403 6.403 19 O -0.336 6.336 20 C -0.039 4.039 21 C -0.075 4.075 22 C -0.151 4.151 23 C 0.034 3.966 24 F -0.116 7.116 25 C 0.037 3.963 26 F -0.114 7.114 27 C -0.142 4.142 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.259 0.741 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.068 -1.571 6.620 7.464 hybrid contribution 0.473 0.703 -0.546 1.008 sum 3.540 -0.867 6.074 7.084 Atomic orbital electron populations 1.21597 0.91973 1.02005 1.03004 1.20056 0.97861 1.00148 0.89742 0.87982 1.20246 0.80713 0.86246 0.85595 1.90548 1.54743 1.16959 1.85893 1.43290 1.57948 1.08439 1.05419 1.19376 1.34407 0.81968 1.12319 0.89173 1.25456 0.93518 0.99580 0.97124 1.69940 1.23768 1.36137 1.18642 0.86144 0.78405 0.83007 0.78821 1.19026 1.20463 1.20523 1.21054 0.88329 0.98079 0.91215 1.21897 1.01341 1.00883 0.92499 1.23794 0.79297 0.76601 0.87788 1.90705 1.51725 1.48306 1.49542 1.84594 1.29270 1.72693 1.47037 1.19689 0.95215 0.94126 0.94866 1.21073 0.97983 0.93718 0.94775 1.21064 0.98727 1.01001 0.94290 1.17666 1.01897 0.90107 0.86921 1.91481 1.87767 1.81550 1.50781 1.17561 0.97846 0.89830 0.91026 1.91490 1.72509 1.80663 1.66777 1.20991 0.99180 1.01316 0.92728 0.92883 0.92730 0.89898 0.91764 0.91812 0.87629 0.87848 0.88113 0.74103 0.83773 0.84116 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.98 37.16 0.33 -1.73 16 2 C -0.06 -0.98 2.23 -92.92 -0.21 -1.19 16 3 H 0.10 1.70 6.26 -51.93 -0.33 1.37 16 4 C 0.48 10.18 6.68 -10.99 -0.07 10.10 16 5 O -0.60 -13.55 14.17 5.55 0.08 -13.47 16 6 N -0.43 -9.58 2.50 -114.81 -0.29 -9.87 16 7 C -0.35 -7.80 8.09 -14.93 -0.12 -7.92 16 8 H 0.09 1.89 6.75 -52.49 -0.35 1.53 16 9 C 0.05 1.17 4.94 -17.47 -0.09 1.08 16 10 N -0.85 -20.80 11.72 55.50 0.65 -20.14 16 11 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 12 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 13 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 15 C 0.14 3.04 4.11 -4.04 -0.02 3.02 16 16 C -0.13 -2.36 6.09 -27.88 -0.17 -2.53 16 17 C 0.48 8.50 8.33 36.01 0.30 8.80 16 18 O -0.52 -10.60 16.74 -18.75 -0.31 -10.91 16 19 O -0.52 -7.23 13.42 -39.24 -0.53 -7.75 16 20 C -0.04 -0.60 4.63 -104.62 -0.48 -1.09 16 21 C -0.06 -0.88 7.86 -39.58 -0.31 -1.19 16 22 C -0.13 -1.83 10.02 -39.53 -0.40 -2.22 16 23 C 0.05 0.80 7.31 -39.37 -0.29 0.51 16 24 F -0.14 -2.05 17.18 2.25 0.04 -2.01 16 25 C 0.06 0.86 7.31 -39.37 -0.29 0.57 16 26 F -0.14 -2.07 17.18 2.25 0.04 -2.03 16 27 C -0.12 -1.80 9.65 -39.53 -0.38 -2.18 16 28 H 0.05 0.84 7.33 -51.93 -0.38 0.45 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.53 7.84 -51.93 -0.41 1.12 16 31 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.06 1.52 7.64 -51.93 -0.40 1.13 16 33 H 0.11 2.56 5.84 -51.93 -0.30 2.26 16 34 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.10 1.87 7.99 -51.93 -0.42 1.45 16 36 H 0.40 3.61 9.10 45.56 0.41 4.02 16 37 H 0.14 2.27 6.92 -52.49 -0.36 1.90 16 38 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.14 1.82 7.94 -52.49 -0.42 1.40 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -27.92 346.32 -5.67 -33.59 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.35 Total: 10.60 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.19 Total: 4.04 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.36 Total: -30.01 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.76 Total: -32.13 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.92 -5.67 -33.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.469 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds