Wall clock time and date at job start Tue Mar 31 2020 15:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46877 * 2 1 4 4 C 1.50691 * 109.47679 * 239.99536 * 2 1 3 5 5 O 1.21292 * 120.00504 * 263.42265 * 4 2 1 6 6 N 1.34783 * 119.99816 * 83.41739 * 4 2 1 7 7 C 1.37098 * 119.99805 * 4.60023 * 6 4 2 8 8 H 1.07998 * 119.99845 * 42.58356 * 7 6 4 9 9 C 1.38952 * 119.99922 * 222.57940 * 7 6 4 10 10 N 1.31411 * 120.00005 * 17.85220 * 9 7 6 11 11 Si 1.86795 * 119.99880 * 197.85666 * 9 7 6 12 12 H 1.48499 * 109.47398 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47313 * 120.00021 * 11 9 7 14 14 H 1.48504 * 109.47163 * 239.99977 * 11 9 7 15 15 C 1.46504 * 119.99760 * 184.60291 * 6 4 2 16 16 C 1.53006 * 109.46755 * 276.10528 * 15 6 4 17 17 C 1.50704 * 109.46854 * 180.02562 * 16 15 6 18 18 O 1.20825 * 119.99793 * 0.02562 * 17 16 15 19 19 O 1.34222 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.50704 * 109.47070 * 119.99621 * 2 1 3 21 21 C 1.38258 * 119.96624 * 59.72463 * 20 2 1 22 22 C 1.38211 * 120.06894 * 179.72310 * 21 20 2 23 23 C 1.38411 * 120.00326 * 0.55616 * 22 21 20 24 24 F 1.35097 * 120.03779 * 179.74556 * 23 22 21 25 25 C 1.38650 * 119.92533 * 359.72043 * 23 22 21 26 26 F 1.35102 * 120.03142 * 180.02562 * 25 23 22 27 27 C 1.38219 * 119.96365 * 240.00418 * 20 2 1 28 28 H 1.08998 * 109.46596 * 181.06848 * 1 2 3 29 29 H 1.09003 * 109.47082 * 301.06610 * 1 2 3 30 30 H 1.09001 * 109.46747 * 61.06834 * 1 2 3 31 31 H 0.96997 * 120.00170 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.47577 * 36.10465 * 15 6 4 33 33 H 1.09002 * 109.46628 * 156.11271 * 15 6 4 34 34 H 1.09000 * 109.47408 * 300.00386 * 16 15 6 35 35 H 1.09003 * 109.46699 * 60.00447 * 16 15 6 36 36 H 0.96706 * 116.99468 * 180.02562 * 19 17 16 37 37 H 1.08002 * 119.96172 * 0.02562 * 21 20 2 38 38 H 1.08007 * 119.99467 * 180.27955 * 22 21 20 39 39 H 1.07994 * 120.00161 * 0.02562 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 8 2.3481 -1.8800 -1.1690 6 7 2.1310 -0.0463 -2.3990 7 6 1.8646 1.2977 -2.4482 8 1 2.2325 1.9499 -1.6700 9 6 1.1213 1.8206 -3.4993 10 7 0.3851 1.0255 -4.2428 11 14 1.1688 3.6536 -3.8556 12 1 2.0662 4.3243 -2.8809 13 1 1.6775 3.8772 -5.2328 14 1 -0.2001 4.2167 -3.7361 15 6 2.5227 -0.7606 -3.6166 16 6 4.0483 -0.8563 -3.6832 17 6 4.4513 -1.5905 -4.9361 18 8 3.6052 -1.9952 -5.6977 19 8 5.7502 -1.7949 -5.2057 20 6 2.0324 -0.7103 1.2305 21 6 1.6932 -2.0323 1.4516 22 6 2.1574 -2.6875 2.5765 23 6 2.9532 -2.0170 3.4891 24 9 3.4031 -2.6552 4.5915 25 6 3.2886 -0.6895 3.2703 26 9 4.0657 -0.0331 4.1593 27 6 2.8269 -0.0378 2.1399 28 1 -0.3632 -1.0275 0.0192 29 1 -0.3633 0.5303 0.8803 30 1 -0.3633 0.4972 -0.8994 31 1 -0.1341 1.3906 -4.9763 32 1 2.0960 -1.7634 -3.6028 33 1 2.1542 -0.2207 -4.4889 34 1 4.4751 0.1466 -3.6970 35 1 4.4168 -1.3961 -2.8108 36 1 5.9597 -2.2704 -6.0213 37 1 1.0689 -2.5549 0.7420 38 1 1.8955 -3.7216 2.7457 39 1 3.0870 0.9962 1.9686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589342195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:06 Heat of formation + Delta-G solvation = -211.891127 kcal Electronic energy + Delta-G solvation = -27959.876536 eV Core-core repulsion = 23502.791241 eV Total energy + Delta-G solvation = -4457.085295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.47093 -49.55284 -41.41259 -40.97592 -39.50886 -37.21853 -36.71808 -34.84437 -33.77085 -32.17018 -31.82869 -29.88617 -27.02520 -26.34474 -24.90592 -24.19637 -22.87900 -21.79364 -20.87385 -19.30514 -18.94336 -18.67812 -18.21322 -17.70386 -17.54146 -17.40816 -17.28574 -16.95044 -16.33636 -15.99172 -15.96008 -15.66399 -15.46762 -15.29512 -14.87968 -14.66303 -14.35080 -14.15607 -13.91526 -13.73684 -13.42310 -13.19917 -12.99930 -12.84285 -12.75542 -12.67131 -12.56012 -12.38821 -12.24780 -12.02151 -11.94349 -11.71277 -11.63820 -10.96561 -10.33891 -9.93892 -9.57847 -9.42751 -8.25549 -6.08223 -0.06448 0.07797 1.19673 1.46552 1.55276 1.65083 1.96786 2.10636 2.37230 2.43179 2.79321 3.09044 3.10115 3.34624 3.58755 3.74151 4.01591 4.07694 4.14235 4.21384 4.36046 4.38340 4.53346 4.56235 4.74265 4.79268 4.86146 4.89657 5.00677 5.07273 5.08220 5.14076 5.35597 5.43862 5.53687 5.58370 5.60234 5.79856 6.06660 6.43059 7.00466 7.18470 7.59908 8.03157 8.78117 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.004095 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.007893 B = 6835.742811 C = 8258.255278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 H 0.111 0.889 4 C 0.475 3.525 5 O -0.617 6.617 6 N -0.445 5.445 7 C -0.352 4.352 8 H 0.106 0.894 9 C 0.012 3.988 10 N -0.890 5.890 11 Si 0.972 3.028 12 H -0.250 1.250 13 H -0.287 1.287 14 H -0.283 1.283 15 C 0.144 3.856 16 C -0.118 4.118 17 C 0.494 3.506 18 O -0.551 6.551 19 O -0.508 6.508 20 C -0.049 4.049 21 C -0.065 4.065 22 C -0.123 4.123 23 C 0.050 3.950 24 F -0.138 7.138 25 C 0.051 3.949 26 F -0.137 7.137 27 C -0.116 4.116 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.426 0.574 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -0.162 7.850 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.070 4.070 3 H 0.129 0.871 4 C 0.265 3.735 5 O -0.504 6.504 6 N -0.163 5.163 7 C -0.479 4.479 8 H 0.123 0.877 9 C -0.193 4.193 10 N -0.526 5.526 11 Si 0.796 3.204 12 H -0.173 1.173 13 H -0.214 1.214 14 H -0.209 1.209 15 C 0.019 3.981 16 C -0.157 4.157 17 C 0.337 3.663 18 O -0.442 6.442 19 O -0.322 6.322 20 C -0.050 4.050 21 C -0.083 4.083 22 C -0.141 4.141 23 C 0.030 3.970 24 F -0.117 7.117 25 C 0.031 3.969 26 F -0.116 7.116 27 C -0.135 4.135 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.288 0.712 37 H 0.154 0.846 38 H 0.183 0.817 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.265 -0.612 7.920 9.017 hybrid contribution 0.165 0.303 -0.927 0.989 sum 4.430 -0.309 6.994 8.285 Atomic orbital electron populations 1.21537 0.91294 1.02005 1.03046 1.19989 0.98303 1.00200 0.88510 0.87071 1.20918 0.79952 0.86245 0.86369 1.90523 1.55455 1.18012 1.86424 1.43493 1.58450 1.08745 1.05628 1.19710 1.33664 0.82085 1.12464 0.87664 1.26181 0.93099 1.03006 0.96965 1.70062 1.25184 1.37901 1.19460 0.85193 0.78219 0.78667 0.78295 1.17315 1.21363 1.20902 1.20780 0.90649 0.95926 0.90738 1.21669 0.98752 1.01996 0.93283 1.23456 0.80052 0.75808 0.86959 1.90705 1.53025 1.49828 1.50593 1.84511 1.26589 1.72523 1.48556 1.19583 0.96266 0.94432 0.94670 1.21069 0.98245 0.93766 0.95198 1.21228 0.97695 1.01987 0.93235 1.17803 1.01962 0.90192 0.87012 1.91481 1.87786 1.81567 1.50843 1.17657 0.98010 0.89994 0.91196 1.91487 1.72575 1.80713 1.66832 1.21090 0.98225 1.02129 0.92018 0.93106 0.89677 0.92565 0.92120 0.94816 0.90001 0.86393 0.87940 0.71222 0.84643 0.81683 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 8.98 71.98 0.65 -3.16 16 2 C -0.05 -1.64 2.23 -12.29 -0.03 -1.67 16 3 H 0.11 3.48 6.26 -2.39 -0.01 3.46 16 4 C 0.48 20.01 6.68 87.65 0.59 20.60 16 5 O -0.62 -28.32 14.17 -3.07 -0.04 -28.36 16 6 N -0.45 -19.85 2.50 -635.52 -1.59 -21.44 16 7 C -0.35 -15.37 8.09 84.04 0.68 -14.69 16 8 H 0.11 4.21 6.75 -2.91 -0.02 4.19 16 9 C 0.01 0.54 4.94 84.93 0.42 0.96 16 10 N -0.89 -44.69 11.72 21.66 0.25 -44.44 16 11 Si 0.97 35.98 29.59 68.60 2.03 38.01 16 12 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 13 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 15 C 0.14 6.53 4.11 86.38 0.36 6.89 16 16 C -0.12 -4.36 6.09 29.85 0.18 -4.18 16 17 C 0.49 17.10 8.33 71.24 0.59 17.69 16 18 O -0.55 -22.93 16.74 21.97 0.37 -22.56 16 19 O -0.51 -12.91 13.42 -51.34 -0.69 -13.60 16 20 C -0.05 -1.46 4.63 -19.86 -0.09 -1.55 16 21 C -0.06 -1.89 7.86 22.27 0.18 -1.72 16 22 C -0.12 -3.16 10.02 22.30 0.22 -2.94 16 23 C 0.05 1.39 7.31 22.41 0.16 1.55 16 24 F -0.14 -3.85 17.18 44.97 0.77 -3.08 16 25 C 0.05 1.44 7.31 22.41 0.16 1.60 16 26 F -0.14 -3.90 17.18 44.97 0.77 -3.13 16 27 C -0.12 -3.11 9.65 22.31 0.22 -2.90 16 28 H 0.05 1.59 7.33 -2.39 -0.02 1.57 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 31 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 32 H 0.03 1.69 7.64 -2.39 -0.02 1.67 16 33 H 0.08 4.13 5.84 -2.39 -0.01 4.11 16 34 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 35 H 0.10 3.76 7.99 -2.39 -0.02 3.74 16 36 H 0.43 6.57 9.10 -74.05 -0.67 5.89 16 37 H 0.14 4.21 6.92 -2.91 -0.02 4.19 16 38 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.16 3.65 7.94 -2.91 -0.02 3.63 16 Total: -1.00 -60.55 346.32 6.61 -53.94 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.45 Total: 28.18 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 4.28 Total: 16.48 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.33 Total: -65.87 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -0.36 Total: -64.53 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 1.55 Total: -6.21 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -60.55 6.61 -53.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.954 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds