Wall clock time and date at job start Tue Mar 31 2020 15:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47194 * 317.61922 * 3 2 1 5 5 C 1.36841 * 120.00060 * 275.00520 * 4 3 2 6 6 H 1.07992 * 120.00275 * 188.16739 * 5 4 3 7 7 C 1.39068 * 120.00049 * 8.16845 * 5 4 3 8 8 N 1.31358 * 119.99801 * 14.70892 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 194.70369 * 7 5 4 10 10 H 1.48500 * 109.46813 * 90.00204 * 9 7 5 11 11 H 1.48498 * 109.46953 * 209.99879 * 9 7 5 12 12 H 1.48497 * 109.46973 * 330.00183 * 9 7 5 13 13 C 1.34772 * 119.99879 * 95.00502 * 4 3 2 14 14 O 1.21609 * 120.00072 * 184.97001 * 13 4 3 15 15 C 1.47626 * 120.00049 * 4.96961 * 13 4 3 16 16 C 1.39806 * 120.00793 * 310.15226 * 15 13 4 17 17 C 1.37629 * 120.08708 * 179.97438 * 16 15 13 18 18 C 1.39446 * 120.09781 * 0.02562 * 17 16 15 19 19 C 1.48286 * 119.99697 * 179.72605 * 18 17 16 20 20 N 1.34109 * 126.68630 * 179.68704 * 19 18 17 21 21 N 1.28982 * 107.26319 * 179.89451 * 20 19 18 22 22 N 1.28723 * 108.96480 * 0.37328 * 21 20 19 23 23 H 0.97001 * 125.33437 * 179.75371 * 22 21 20 24 24 N 1.28871 * 109.33378 * 359.76555 * 22 21 20 25 25 C 1.39915 * 120.00905 * 0.02562 * 18 17 16 26 26 O 1.35864 * 120.04125 * 179.97438 * 25 18 17 27 27 C 1.42900 * 116.99814 * 179.97438 * 26 25 18 28 28 C 1.38240 * 119.91706 * 359.97071 * 25 18 17 29 29 H 4.40647 * 5.51330 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46972 * 197.61778 * 3 2 1 31 31 H 1.08997 * 109.46951 * 77.62375 * 3 2 1 32 32 H 0.96995 * 119.99890 * 180.02562 * 8 7 5 33 33 H 1.08002 * 119.95334 * 359.97438 * 16 15 13 34 34 H 1.08000 * 119.95540 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.46939 * 60.00316 * 27 26 25 36 36 H 1.09002 * 109.47000 * 180.02562 * 27 26 25 37 37 H 1.08996 * 109.47057 * 299.99980 * 27 26 25 38 38 H 1.08003 * 120.04846 * 180.02562 * 28 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0194 0.9310 5 6 3.2653 -0.7256 2.2611 6 1 3.7472 -1.4282 2.9246 7 6 2.7772 0.4779 2.7585 8 7 1.9477 1.1980 2.0383 9 14 3.3012 1.0702 4.4508 10 1 4.5241 1.9035 4.3269 11 1 2.2102 1.8787 5.0519 12 1 3.5857 -0.1005 5.3189 13 6 3.4560 -2.2472 0.4775 14 8 3.7751 -3.1207 1.2612 15 6 3.4204 -2.5318 -0.9706 16 6 2.2923 -2.1908 -1.7227 17 6 2.2577 -2.4549 -3.0730 18 6 3.3473 -3.0639 -3.6947 19 6 3.3051 -3.3529 -5.1485 20 7 4.2725 -3.9251 -5.8800 21 7 3.8421 -3.9983 -7.0937 22 7 2.6597 -3.4926 -7.1494 23 1 2.1163 -3.4234 -7.9499 24 7 2.3111 -3.0922 -5.9751 25 6 4.4779 -3.4079 -2.9457 26 8 5.5396 -4.0017 -3.5506 27 6 6.6599 -4.3246 -2.7243 28 6 4.5133 -3.1428 -1.5894 29 1 -1.0499 0.0000 0.0003 30 1 3.0089 0.9803 0.3110 31 1 3.0094 -0.2194 -1.0038 32 1 1.6075 2.0376 2.3850 33 1 1.4470 -1.7194 -1.2435 34 1 1.3853 -2.1901 -3.6521 35 1 6.3464 -5.0138 -1.9402 36 1 7.4358 -4.7921 -3.3305 37 1 7.0522 -3.4138 -2.2720 38 1 5.3851 -3.4071 -1.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602719661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:31 Heat of formation + Delta-G solvation = 168.990026 kcal Electronic energy + Delta-G solvation = -27052.528086 eV Core-core repulsion = 23094.940974 eV Total energy + Delta-G solvation = -3957.587111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.34328 -40.18341 -38.75321 -36.87103 -35.35661 -34.29357 -33.49767 -32.15455 -31.40549 -30.49212 -29.95978 -27.30147 -26.52880 -25.56102 -24.53834 -23.99319 -21.87626 -21.76836 -19.81128 -19.21015 -18.04373 -17.70227 -17.06323 -16.57134 -16.36587 -15.91440 -15.70699 -15.52723 -14.78003 -14.25976 -14.15706 -14.08877 -13.77535 -13.35491 -13.13152 -12.75333 -12.62457 -12.27868 -12.21209 -11.87342 -11.61533 -11.28335 -11.25975 -11.22361 -11.08602 -11.00992 -10.90223 -10.70967 -10.54130 -10.34879 -9.51145 -9.34592 -8.86219 -8.72796 -8.50630 -8.09893 -7.91482 -6.43113 -3.96030 0.73692 1.25178 1.62197 2.27252 2.40863 3.07993 3.18205 3.22759 3.35216 3.55509 3.77705 3.79598 3.98630 4.09683 4.13963 4.29511 4.69711 4.95946 5.09270 5.16239 5.31319 5.34978 5.41492 5.50135 5.55372 5.61147 5.62995 5.66661 5.72443 6.01825 6.23206 6.34468 6.41987 6.53681 6.73639 6.81989 6.85449 7.04970 7.41246 7.46918 7.85371 8.24840 8.28378 8.81124 8.97642 9.18940 9.73734 10.50417 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.003457 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.313412 B = 8096.496353 C = 9184.329481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.095 4.095 3 C 0.222 3.778 4 N -0.422 5.422 5 C -0.306 4.306 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.861 5.861 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.468 3.532 14 O -0.580 6.580 15 C -0.025 4.025 16 C -0.144 4.144 17 C -0.044 4.044 18 C -0.065 4.065 19 C 0.237 3.763 20 N -0.247 5.247 21 N -0.063 5.063 22 N -0.235 5.235 23 H 0.472 0.528 24 N -0.302 5.302 25 C 0.164 3.836 26 O -0.291 6.291 27 C 0.022 3.978 28 C -0.177 4.177 29 H 0.199 0.801 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.272 0.728 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -3.520 -14.974 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.097 4.097 3 C 0.100 3.900 4 N -0.137 5.137 5 C -0.433 4.433 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.499 5.499 9 Si 0.759 3.241 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.257 3.743 14 O -0.466 6.466 15 C -0.030 4.030 16 C -0.163 4.163 17 C -0.064 4.064 18 C -0.069 4.069 19 C -0.042 4.042 20 N -0.121 5.121 21 N -0.059 5.059 22 N -0.080 5.080 23 H 0.325 0.675 24 N -0.154 5.154 25 C 0.116 3.884 26 O -0.203 6.203 27 C -0.073 4.073 28 C -0.197 4.197 29 H 0.216 0.784 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.707 -4.015 -15.292 15.902 hybrid contribution -0.681 0.717 0.973 1.387 sum 1.026 -3.298 -14.319 14.730 Atomic orbital electron populations 1.24236 0.95329 1.03735 1.05533 1.22838 0.94039 0.97125 0.95685 1.18679 0.84654 0.95352 0.91355 1.43697 1.53401 1.08634 1.08011 1.19852 1.36217 1.03373 0.83886 0.87175 1.25377 0.95091 0.96667 1.00302 1.69993 1.27404 1.14628 1.37876 0.85817 0.78208 0.78947 0.81173 1.20133 1.20876 1.19261 1.17789 0.86691 0.83193 0.86617 1.90648 1.54701 1.44707 1.56518 1.20251 0.93388 0.94460 0.94864 1.21613 0.99312 1.02079 0.93312 1.20858 0.96219 0.94937 0.94419 1.16517 0.95339 1.09784 0.85279 1.23448 0.86564 0.98159 0.96030 1.76302 1.23807 1.16651 0.95304 1.78906 0.96536 1.14108 1.16324 1.47674 1.12626 1.38162 1.09586 0.67489 1.74949 1.26195 1.22382 0.91891 1.18675 0.87027 0.92225 0.90495 1.86270 1.23966 1.73504 1.36546 1.23128 0.87330 1.00740 0.96080 1.21172 1.00855 1.05132 0.92506 0.78421 0.86388 0.91523 0.91706 0.83717 0.84294 0.92353 0.88219 0.92447 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.35 19.05 29.55 0.56 -4.79 16 2 C -0.09 -2.04 8.70 -37.12 -0.32 -2.37 16 3 C 0.22 4.81 4.76 -6.83 -0.03 4.77 16 4 N -0.42 -10.33 2.59 -119.10 -0.31 -10.64 16 5 C -0.31 -8.07 9.46 -15.01 -0.14 -8.21 16 6 H 0.11 3.05 7.25 -52.49 -0.38 2.67 16 7 C 0.03 0.74 5.17 -17.45 -0.09 0.65 16 8 N -0.86 -21.17 8.37 55.50 0.46 -20.71 16 9 Si 0.93 19.68 29.58 -169.99 -5.03 14.65 16 10 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.47 11.25 7.16 -12.43 -0.09 11.16 16 14 O -0.58 -15.85 16.64 5.27 0.09 -15.76 16 15 C -0.02 -0.49 4.89 -104.95 -0.51 -1.00 16 16 C -0.14 -2.52 7.54 -39.22 -0.30 -2.81 16 17 C -0.04 -0.67 9.67 -39.35 -0.38 -1.05 16 18 C -0.06 -1.01 5.89 -104.69 -0.62 -1.63 16 19 C 0.24 3.54 7.90 -156.26 -1.23 2.31 16 20 N -0.25 -3.76 11.04 32.14 0.35 -3.41 16 21 N -0.06 -0.79 13.47 60.35 0.81 0.02 16 22 N -0.24 -2.27 7.90 60.35 0.48 -1.79 16 23 H 0.47 2.06 8.96 -340.36 -3.05 -0.99 16 24 N -0.30 -3.80 12.07 32.15 0.39 -3.41 16 25 C 0.16 2.64 6.68 -38.95 -0.26 2.38 16 26 O -0.29 -4.33 8.82 -19.31 -0.17 -4.50 16 27 C 0.02 0.25 9.81 101.05 0.99 1.24 16 28 C -0.18 -3.06 8.70 -39.05 -0.34 -3.40 16 29 H 0.20 3.21 7.80 -54.10 -0.42 2.78 16 30 H 0.12 2.69 6.29 -51.93 -0.33 2.36 16 31 H 0.07 1.27 5.52 -51.93 -0.29 0.98 16 32 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.15 2.64 4.71 -52.49 -0.25 2.39 16 34 H 0.14 1.80 7.87 -52.49 -0.41 1.38 16 35 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 38 H 0.14 2.32 6.29 -52.48 -0.33 1.99 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -32.46 333.66 -6.47 -38.93 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.81 Total: 4.35 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.76 Total: -2.75 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 2.19 Total: -39.94 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.08 Total: -20.26 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.46 -6.47 -38.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.919 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds