Wall clock time and date at job start Tue Mar 31 2020 15:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47194 * 317.61922 * 3 2 1 5 5 C 1.36841 * 120.00060 * 275.00520 * 4 3 2 6 6 H 1.07992 * 120.00275 * 188.16739 * 5 4 3 7 7 C 1.39068 * 120.00049 * 8.16845 * 5 4 3 8 8 N 1.31358 * 119.99801 * 14.70892 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 194.70369 * 7 5 4 10 10 H 1.48500 * 109.46813 * 90.00204 * 9 7 5 11 11 H 1.48498 * 109.46953 * 209.99879 * 9 7 5 12 12 H 1.48497 * 109.46973 * 330.00183 * 9 7 5 13 13 C 1.34772 * 119.99879 * 95.00502 * 4 3 2 14 14 O 1.21609 * 120.00072 * 184.97001 * 13 4 3 15 15 C 1.47626 * 120.00049 * 4.96961 * 13 4 3 16 16 C 1.39806 * 120.00793 * 310.15226 * 15 13 4 17 17 C 1.37629 * 120.08708 * 179.97438 * 16 15 13 18 18 C 1.39446 * 120.09781 * 0.02562 * 17 16 15 19 19 C 1.48286 * 119.99697 * 179.72605 * 18 17 16 20 20 N 1.34109 * 126.68630 * 179.68704 * 19 18 17 21 21 N 1.28982 * 107.26319 * 179.89451 * 20 19 18 22 22 N 1.28723 * 108.96480 * 0.37328 * 21 20 19 23 23 H 0.97001 * 125.33437 * 179.75371 * 22 21 20 24 24 N 1.28871 * 109.33378 * 359.76555 * 22 21 20 25 25 C 1.39915 * 120.00905 * 0.02562 * 18 17 16 26 26 O 1.35864 * 120.04125 * 179.97438 * 25 18 17 27 27 C 1.42900 * 116.99814 * 179.97438 * 26 25 18 28 28 C 1.38240 * 119.91706 * 359.97071 * 25 18 17 29 29 H 4.40647 * 5.51330 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46972 * 197.61778 * 3 2 1 31 31 H 1.08997 * 109.46951 * 77.62375 * 3 2 1 32 32 H 0.96995 * 119.99890 * 180.02562 * 8 7 5 33 33 H 1.08002 * 119.95334 * 359.97438 * 16 15 13 34 34 H 1.08000 * 119.95540 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.46939 * 60.00316 * 27 26 25 36 36 H 1.09002 * 109.47000 * 180.02562 * 27 26 25 37 37 H 1.08996 * 109.47057 * 299.99980 * 27 26 25 38 38 H 1.08003 * 120.04846 * 180.02562 * 28 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0194 0.9310 5 6 3.2653 -0.7256 2.2611 6 1 3.7472 -1.4282 2.9246 7 6 2.7772 0.4779 2.7585 8 7 1.9477 1.1980 2.0383 9 14 3.3012 1.0702 4.4508 10 1 4.5241 1.9035 4.3269 11 1 2.2102 1.8787 5.0519 12 1 3.5857 -0.1005 5.3189 13 6 3.4560 -2.2472 0.4775 14 8 3.7751 -3.1207 1.2612 15 6 3.4204 -2.5318 -0.9706 16 6 2.2923 -2.1908 -1.7227 17 6 2.2577 -2.4549 -3.0730 18 6 3.3473 -3.0639 -3.6947 19 6 3.3051 -3.3529 -5.1485 20 7 4.2725 -3.9251 -5.8800 21 7 3.8421 -3.9983 -7.0937 22 7 2.6597 -3.4926 -7.1494 23 1 2.1163 -3.4234 -7.9499 24 7 2.3111 -3.0922 -5.9751 25 6 4.4779 -3.4079 -2.9457 26 8 5.5396 -4.0017 -3.5506 27 6 6.6599 -4.3246 -2.7243 28 6 4.5133 -3.1428 -1.5894 29 1 -1.0499 0.0000 0.0003 30 1 3.0089 0.9803 0.3110 31 1 3.0094 -0.2194 -1.0038 32 1 1.6075 2.0376 2.3850 33 1 1.4470 -1.7194 -1.2435 34 1 1.3853 -2.1901 -3.6521 35 1 6.3464 -5.0138 -1.9402 36 1 7.4358 -4.7921 -3.3305 37 1 7.0522 -3.4138 -2.2720 38 1 5.3851 -3.4071 -1.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602719661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:30 Heat of formation + Delta-G solvation = 147.440438 kcal Electronic energy + Delta-G solvation = -27053.462546 eV Core-core repulsion = 23094.940974 eV Total energy + Delta-G solvation = -3958.521572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.35011 -41.56751 -40.32395 -38.18596 -37.22486 -35.34925 -34.65946 -33.88566 -33.14734 -31.78523 -31.23677 -28.56991 -28.05252 -27.13334 -25.68147 -25.36560 -23.14558 -23.00599 -21.38001 -20.20192 -19.79810 -19.14248 -18.25612 -18.05482 -17.72789 -17.28732 -17.14922 -16.63895 -16.47967 -15.95830 -15.79432 -15.23573 -15.07148 -14.70165 -14.60012 -14.36852 -13.97359 -13.84159 -13.45959 -13.35395 -13.06485 -12.80804 -12.53638 -12.51057 -12.34849 -12.28464 -12.17173 -12.04710 -12.00360 -11.80955 -11.32543 -11.00417 -10.61034 -10.44371 -9.98161 -9.88448 -9.19334 -8.30905 -5.94396 -0.51845 0.22865 0.33314 1.16838 1.40933 1.43628 1.50167 1.54589 1.90224 2.07901 2.27586 2.34428 2.44403 2.67033 2.69945 3.00919 3.13249 3.19486 3.78246 3.86699 3.96811 4.10045 4.21184 4.27396 4.40999 4.42813 4.46265 4.57605 4.63790 4.72963 4.79972 5.02881 5.08261 5.22032 5.37203 5.42650 5.48395 5.55735 5.71125 5.95828 6.30037 6.38577 7.06010 7.20071 7.22988 7.32271 7.87082 8.59761 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.003457 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.313412 B = 8096.496353 C = 9184.329481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.134 4.134 3 C 0.229 3.771 4 N -0.430 5.430 5 C -0.349 4.349 6 H 0.082 0.918 7 C 0.005 3.995 8 N -0.865 5.865 9 Si 0.992 3.008 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.278 1.278 13 C 0.461 3.539 14 O -0.628 6.628 15 C -0.048 4.048 16 C -0.144 4.144 17 C -0.028 4.028 18 C -0.059 4.059 19 C 0.218 3.782 20 N -0.273 5.273 21 N -0.063 5.063 22 N -0.201 5.201 23 H 0.494 0.506 24 N -0.292 5.292 25 C 0.168 3.832 26 O -0.297 6.297 27 C 0.014 3.986 28 C -0.176 4.176 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.276 0.724 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -3.014 -17.270 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.136 4.136 3 C 0.107 3.893 4 N -0.145 5.145 5 C -0.476 4.476 6 H 0.100 0.900 7 C -0.199 4.199 8 N -0.502 5.502 9 Si 0.816 3.184 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.203 1.203 13 C 0.252 3.748 14 O -0.517 6.517 15 C -0.052 4.052 16 C -0.162 4.162 17 C -0.048 4.048 18 C -0.063 4.063 19 C -0.061 4.061 20 N -0.145 5.145 21 N -0.058 5.058 22 N -0.052 5.052 23 H 0.353 0.647 24 N -0.146 5.146 25 C 0.118 3.882 26 O -0.209 6.209 27 C -0.080 4.080 28 C -0.196 4.196 29 H 0.250 0.750 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.735 -3.486 -17.647 18.003 hybrid contribution -0.430 0.505 1.466 1.609 sum 0.305 -2.980 -16.181 16.456 Atomic orbital electron populations 1.25073 0.96216 1.01912 1.03726 1.22990 0.94484 0.98787 0.97322 1.18613 0.85289 0.93711 0.91679 1.43853 1.53422 1.09355 1.07912 1.19744 1.38600 1.04267 0.84993 0.90015 1.26029 0.94494 0.95963 1.03373 1.70102 1.26813 1.14487 1.38766 0.84945 0.78322 0.78051 0.77096 1.19023 1.19869 1.20276 1.18481 0.85438 0.82534 0.88389 1.90585 1.56581 1.46077 1.58442 1.19923 0.95460 0.97320 0.92515 1.21487 0.98291 1.02344 0.94114 1.21008 0.96846 0.93664 0.93309 1.16704 0.95014 1.08501 0.86085 1.23286 0.87376 0.99571 0.95861 1.76290 1.24637 1.17525 0.96090 1.78861 0.97263 1.14324 1.15400 1.47746 1.11973 1.35745 1.09738 0.64722 1.74902 1.25454 1.21821 0.92392 1.18672 0.87762 0.91945 0.89771 1.86278 1.24302 1.73053 1.37257 1.23407 0.86832 1.01227 0.96550 1.21132 1.00373 1.04862 0.93258 0.75050 0.88033 0.89362 0.91328 0.84432 0.81557 0.92323 0.85428 0.91988 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.57 19.05 74.32 1.42 -8.16 16 2 C -0.13 -5.74 8.70 31.12 0.27 -5.47 16 3 C 0.23 10.12 4.76 84.57 0.40 10.52 16 4 N -0.43 -22.04 2.59 -648.96 -1.68 -23.72 16 5 C -0.35 -19.29 9.46 84.11 0.80 -18.49 16 6 H 0.08 4.86 7.25 -2.91 -0.02 4.84 16 7 C 0.01 0.26 5.17 84.96 0.44 0.70 16 8 N -0.86 -42.65 8.37 21.68 0.18 -42.47 16 9 Si 0.99 40.83 29.58 68.60 2.03 42.86 16 10 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 13 C 0.46 23.30 7.16 86.72 0.62 23.93 16 14 O -0.63 -36.47 16.64 -4.06 -0.07 -36.54 16 15 C -0.05 -1.92 4.89 -20.08 -0.10 -2.02 16 16 C -0.14 -4.96 7.54 22.51 0.17 -4.79 16 17 C -0.03 -0.81 9.67 22.42 0.22 -0.59 16 18 C -0.06 -1.74 5.89 -19.91 -0.12 -1.86 16 19 C 0.22 6.01 7.90 137.29 1.08 7.09 16 20 N -0.27 -7.71 11.04 -52.24 -0.58 -8.29 16 21 N -0.06 -1.41 13.47 37.02 0.50 -0.91 16 22 N -0.20 -3.19 7.90 37.02 0.29 -2.90 16 23 H 0.49 2.42 8.96 -347.53 -3.12 -0.70 16 24 N -0.29 -6.41 12.07 -52.19 -0.63 -7.04 16 25 C 0.17 5.26 6.68 22.68 0.15 5.41 16 26 O -0.30 -8.51 8.82 -92.02 -0.81 -9.32 16 27 C 0.01 0.30 9.81 113.37 1.11 1.42 16 28 C -0.18 -6.21 8.70 22.61 0.20 -6.01 16 29 H 0.23 6.81 7.80 -4.42 -0.03 6.77 16 30 H 0.10 4.75 6.29 -2.39 -0.02 4.74 16 31 H 0.09 3.42 5.52 -2.39 -0.01 3.40 16 32 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 33 H 0.14 4.98 4.71 -2.91 -0.01 4.97 16 34 H 0.17 3.77 7.87 -2.91 -0.02 3.75 16 35 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 38 H 0.14 4.82 6.29 -2.91 -0.02 4.80 16 Total: -1.00 -72.34 333.66 3.94 -68.41 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -1.96 Total: 18.23 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.66 Total: 1.68 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.92 Total: -85.32 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.88 Total: -45.86 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -72.34 3.94 -68.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.848 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds