Wall clock time and date at job start Tue Mar 31 2020 15:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 C 1.50707 * 109.46838 * 240.00525 * 2 1 3 5 5 O 1.21282 * 119.99821 * 246.34196 * 4 2 1 6 6 N 1.34783 * 119.99851 * 66.33946 * 4 2 1 7 7 C 1.37095 * 119.99848 * 4.75477 * 6 4 2 8 8 H 1.07995 * 119.99837 * 231.30475 * 7 6 4 9 9 C 1.38949 * 120.00182 * 51.30687 * 7 6 4 10 10 N 1.31410 * 120.00441 * 200.53770 * 9 7 6 11 11 Si 1.86802 * 119.99833 * 20.54448 * 9 7 6 12 12 H 1.48511 * 109.47000 * 85.60125 * 11 9 7 13 13 H 1.48497 * 109.47147 * 205.59790 * 11 9 7 14 14 H 1.48499 * 109.47550 * 325.60167 * 11 9 7 15 15 C 1.46497 * 119.99733 * 184.75596 * 6 4 2 16 16 C 1.52999 * 109.47313 * 92.42718 * 15 6 4 17 17 C 1.50700 * 109.46888 * 179.97438 * 16 15 6 18 18 O 1.20826 * 120.00189 * 0.02562 * 17 16 15 19 19 O 1.34237 * 119.99382 * 179.97438 * 17 16 15 20 20 C 1.50699 * 109.47519 * 120.00626 * 2 1 3 21 21 C 1.38230 * 119.98499 * 59.99510 * 20 2 1 22 22 C 1.38186 * 120.04831 * 180.02562 * 21 20 2 23 23 C 1.38493 * 120.02683 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.01389 * 179.97438 * 23 22 21 25 25 C 1.38399 * 119.97114 * 359.97438 * 23 22 21 26 26 C 1.38433 * 119.95250 * 0.02562 * 25 23 22 27 27 F 1.35099 * 120.01532 * 179.97438 * 26 25 23 28 28 H 1.09009 * 109.46818 * 302.32117 * 1 2 3 29 29 H 1.09000 * 109.47507 * 62.31920 * 1 2 3 30 30 H 1.08996 * 109.47276 * 182.32184 * 1 2 3 31 31 H 0.96994 * 120.00306 * 179.97438 * 10 9 7 32 32 H 1.09004 * 109.46498 * 212.42600 * 15 6 4 33 33 H 1.09001 * 109.46805 * 332.42218 * 15 6 4 34 34 H 1.09004 * 109.46783 * 300.00045 * 16 15 6 35 35 H 1.08998 * 109.47076 * 59.99205 * 16 15 6 36 36 H 0.96702 * 116.99248 * 180.02562 * 19 17 16 37 37 H 1.07999 * 119.97553 * 0.27898 * 21 20 2 38 38 H 1.08004 * 119.98709 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02001 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6318 -1.7592 -1.1231 6 7 1.8152 -0.1801 -2.4506 7 6 1.2245 1.0516 -2.5674 8 1 0.3714 1.1818 -3.2167 9 6 1.7233 2.1322 -1.8505 10 7 0.9638 3.1818 -1.6306 11 14 3.4737 2.0931 -1.1993 12 1 4.4056 2.5627 -2.2560 13 1 3.5810 2.9816 -0.0143 14 1 3.8262 0.7041 -0.8101 15 6 2.2106 -0.9198 -3.6517 16 6 1.0300 -1.7580 -4.1461 17 6 1.4365 -2.5185 -5.3820 18 8 2.5559 -2.4023 -5.8219 19 8 0.5554 -3.3256 -5.9935 20 6 2.0324 -0.7105 1.2303 21 6 1.6983 -2.0339 1.4487 22 6 2.1578 -2.6866 2.5767 23 6 2.9534 -2.0151 3.4901 24 9 3.4021 -2.6533 4.5931 25 6 3.2886 -0.6901 3.2724 26 6 2.8276 -0.0373 2.1420 27 9 3.1536 1.2563 1.9285 28 1 -0.3633 0.5495 0.8685 29 1 -0.3634 0.4774 -0.9100 30 1 -0.3633 -1.0268 0.0416 31 1 1.3119 3.9360 -1.1298 32 1 2.5082 -0.2168 -4.4297 33 1 3.0482 -1.5759 -3.4149 34 1 0.7323 -2.4609 -3.3680 35 1 0.1924 -1.1019 -4.3827 36 1 0.8623 -3.7928 -6.7826 37 1 1.0810 -2.5594 0.7351 38 1 1.8965 -3.7207 2.7461 39 1 3.9093 -0.1658 3.9840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603137993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:12 Heat of formation + Delta-G solvation = -179.543568 kcal Electronic energy + Delta-G solvation = -28760.910584 eV Core-core repulsion = 24305.227985 eV Total energy + Delta-G solvation = -4455.682600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.89564 -48.78335 -40.15765 -39.69501 -38.22316 -36.04795 -35.07014 -33.87463 -32.34861 -30.79731 -30.56918 -28.63306 -25.35926 -24.74181 -23.68458 -22.84044 -21.73865 -20.56973 -19.35098 -18.08788 -17.97623 -17.63279 -16.76357 -16.48635 -15.97698 -15.84483 -15.77272 -15.50660 -15.28710 -15.05127 -14.58180 -14.35367 -14.27746 -13.79802 -13.76203 -13.18524 -13.01684 -12.88666 -12.57065 -12.52718 -12.20496 -11.87319 -11.67014 -11.57453 -11.39025 -11.33887 -11.13124 -10.93155 -10.67113 -10.56013 -10.39946 -10.33094 -9.88996 -9.14808 -8.87890 -8.76295 -8.33733 -7.80977 -6.63709 -4.37506 1.14618 1.22596 2.41138 3.02751 3.16550 3.20591 3.26930 3.53616 3.64808 4.01073 4.03643 4.34416 4.61169 4.73947 4.78685 4.93732 5.00448 5.27221 5.36113 5.43472 5.60702 5.76806 5.80623 5.89209 5.95633 5.97865 6.10177 6.16587 6.21565 6.33728 6.37122 6.48146 6.54171 6.67145 6.69854 6.94352 7.06228 7.50807 7.56236 8.05546 8.30592 8.81538 9.08930 9.52403 10.44217 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.004995 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.710928 B = 5604.426814 C = 7046.789758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 H 0.103 0.897 4 C 0.504 3.496 5 O -0.584 6.584 6 N -0.469 5.469 7 C -0.357 4.357 8 H 0.103 0.897 9 C 0.082 3.918 10 N -0.845 5.845 11 Si 0.846 3.154 12 H -0.277 1.277 13 H -0.270 1.270 14 H -0.257 1.257 15 C 0.120 3.880 16 C -0.123 4.123 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.521 6.521 20 C -0.095 4.095 21 C -0.025 4.025 22 C -0.166 4.166 23 C 0.116 3.884 24 F -0.138 7.138 25 C -0.196 4.196 26 C 0.126 3.874 27 F -0.128 7.128 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.279 0.721 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -8.051 3.534 9.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 H 0.120 0.880 4 C 0.294 3.706 5 O -0.468 6.468 6 N -0.190 5.190 7 C -0.484 4.484 8 H 0.121 0.879 9 C -0.128 4.128 10 N -0.478 5.478 11 Si 0.671 3.329 12 H -0.203 1.203 13 H -0.195 1.195 14 H -0.182 1.182 15 C -0.004 4.004 16 C -0.162 4.162 17 C 0.327 3.673 18 O -0.407 6.407 19 O -0.333 6.333 20 C -0.097 4.097 21 C -0.043 4.043 22 C -0.185 4.185 23 C 0.097 3.903 24 F -0.117 7.117 25 C -0.216 4.216 26 C 0.107 3.893 27 F -0.107 7.107 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.879 -8.073 3.917 9.168 hybrid contribution 1.440 0.211 -0.077 1.458 sum -0.439 -7.862 3.840 8.761 Atomic orbital electron populations 1.21669 0.91200 1.01135 1.04636 1.20178 0.98916 1.00072 0.89230 0.87953 1.20219 0.80677 0.84599 0.85145 1.90558 1.44450 1.24847 1.86907 1.43566 1.55618 1.17388 1.02435 1.18852 1.13730 0.83369 1.32416 0.87925 1.25526 0.97018 0.94961 0.95279 1.69696 1.35369 1.06926 1.35809 0.87424 0.86131 0.80056 0.79253 1.20324 1.19536 1.18175 1.21241 0.94336 0.95495 0.89306 1.21770 1.02958 0.99248 0.92185 1.23707 0.82454 0.76361 0.84810 1.90706 1.21993 1.62706 1.65268 1.84582 1.46969 1.57235 1.44519 1.19870 0.98344 0.95285 0.96179 1.20711 0.96526 0.92357 0.94718 1.21135 1.00881 1.01274 0.95189 1.17222 0.97934 0.90328 0.84861 1.91488 1.87640 1.81636 1.50938 1.20857 1.06342 0.94688 0.99693 1.17228 0.97734 0.79314 0.95029 1.91516 1.90821 1.33870 1.94476 0.92850 0.88107 0.93466 0.91056 0.90065 0.90530 0.87838 0.87144 0.73809 0.83898 0.84303 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.84 37.16 0.33 -2.01 16 2 C -0.06 -1.31 1.45 -92.92 -0.13 -1.44 16 3 H 0.10 2.33 2.27 -51.93 -0.12 2.21 16 4 C 0.50 11.21 4.49 -10.98 -0.05 11.16 16 5 O -0.58 -13.71 14.40 5.56 0.08 -13.63 16 6 N -0.47 -10.25 1.96 -114.81 -0.23 -10.48 16 7 C -0.36 -8.34 7.41 -14.93 -0.11 -8.45 16 8 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.08 2.01 4.07 -17.47 -0.07 1.94 16 10 N -0.84 -21.38 13.96 55.50 0.77 -20.60 16 11 Si 0.85 20.29 23.50 -169.99 -3.99 16.30 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.40 7.05 56.52 0.40 -6.00 16 14 H -0.26 -6.42 5.39 56.52 0.30 -6.12 16 15 C 0.12 2.34 4.73 -4.04 -0.02 2.33 16 16 C -0.12 -1.94 6.13 -27.88 -0.17 -2.11 16 17 C 0.48 7.27 8.33 36.01 0.30 7.57 16 18 O -0.52 -9.29 16.74 -18.75 -0.31 -9.61 16 19 O -0.52 -6.06 13.42 -39.28 -0.53 -6.59 16 20 C -0.10 -1.80 4.47 -104.55 -0.47 -2.26 16 21 C -0.03 -0.41 7.83 -39.60 -0.31 -0.72 16 22 C -0.17 -2.35 10.02 -39.51 -0.40 -2.74 16 23 C 0.12 1.70 7.30 -39.43 -0.29 1.42 16 24 F -0.14 -1.93 17.27 2.25 0.04 -1.90 16 25 C -0.20 -3.05 10.01 -39.45 -0.39 -3.44 16 26 C 0.13 2.32 7.24 -39.43 -0.29 2.04 16 27 F -0.13 -2.56 14.59 2.25 0.03 -2.53 16 28 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.10 2.01 6.19 -51.93 -0.32 1.69 16 30 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 31 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.08 1.59 8.02 -51.93 -0.42 1.18 16 33 H 0.08 1.60 7.25 -51.93 -0.38 1.22 16 34 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.40 2.84 9.10 45.56 0.41 3.26 16 37 H 0.14 2.18 7.35 -52.49 -0.39 1.79 16 38 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -29.02 332.12 -4.55 -33.58 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.35 Total: 7.18 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.07 Total: 3.27 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.55 Total: -31.08 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.76 Total: -29.82 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -3.99 Total: 16.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.02 -4.55 -33.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603137993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.968 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds