Wall clock time and date at job start Tue Mar 31 2020 15:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 C 1.50707 * 109.46838 * 240.00525 * 2 1 3 5 5 O 1.21282 * 119.99821 * 246.34196 * 4 2 1 6 6 N 1.34783 * 119.99851 * 66.33946 * 4 2 1 7 7 C 1.37095 * 119.99848 * 4.75477 * 6 4 2 8 8 H 1.07995 * 119.99837 * 231.30475 * 7 6 4 9 9 C 1.38949 * 120.00182 * 51.30687 * 7 6 4 10 10 N 1.31410 * 120.00441 * 200.53770 * 9 7 6 11 11 Si 1.86802 * 119.99833 * 20.54448 * 9 7 6 12 12 H 1.48511 * 109.47000 * 85.60125 * 11 9 7 13 13 H 1.48497 * 109.47147 * 205.59790 * 11 9 7 14 14 H 1.48499 * 109.47550 * 325.60167 * 11 9 7 15 15 C 1.46497 * 119.99733 * 184.75596 * 6 4 2 16 16 C 1.52999 * 109.47313 * 92.42718 * 15 6 4 17 17 C 1.50700 * 109.46888 * 179.97438 * 16 15 6 18 18 O 1.20826 * 120.00189 * 0.02562 * 17 16 15 19 19 O 1.34237 * 119.99382 * 179.97438 * 17 16 15 20 20 C 1.50699 * 109.47519 * 120.00626 * 2 1 3 21 21 C 1.38230 * 119.98499 * 59.99510 * 20 2 1 22 22 C 1.38186 * 120.04831 * 180.02562 * 21 20 2 23 23 C 1.38493 * 120.02683 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.01389 * 179.97438 * 23 22 21 25 25 C 1.38399 * 119.97114 * 359.97438 * 23 22 21 26 26 C 1.38433 * 119.95250 * 0.02562 * 25 23 22 27 27 F 1.35099 * 120.01532 * 179.97438 * 26 25 23 28 28 H 1.09009 * 109.46818 * 302.32117 * 1 2 3 29 29 H 1.09000 * 109.47507 * 62.31920 * 1 2 3 30 30 H 1.08996 * 109.47276 * 182.32184 * 1 2 3 31 31 H 0.96994 * 120.00306 * 179.97438 * 10 9 7 32 32 H 1.09004 * 109.46498 * 212.42600 * 15 6 4 33 33 H 1.09001 * 109.46805 * 332.42218 * 15 6 4 34 34 H 1.09004 * 109.46783 * 300.00045 * 16 15 6 35 35 H 1.08998 * 109.47076 * 59.99205 * 16 15 6 36 36 H 0.96702 * 116.99248 * 180.02562 * 19 17 16 37 37 H 1.07999 * 119.97553 * 0.27898 * 21 20 2 38 38 H 1.08004 * 119.98709 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.02001 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6318 -1.7592 -1.1231 6 7 1.8152 -0.1801 -2.4506 7 6 1.2245 1.0516 -2.5674 8 1 0.3714 1.1818 -3.2167 9 6 1.7233 2.1322 -1.8505 10 7 0.9638 3.1818 -1.6306 11 14 3.4737 2.0931 -1.1993 12 1 4.4056 2.5627 -2.2560 13 1 3.5810 2.9816 -0.0143 14 1 3.8262 0.7041 -0.8101 15 6 2.2106 -0.9198 -3.6517 16 6 1.0300 -1.7580 -4.1461 17 6 1.4365 -2.5185 -5.3820 18 8 2.5559 -2.4023 -5.8219 19 8 0.5554 -3.3256 -5.9935 20 6 2.0324 -0.7105 1.2303 21 6 1.6983 -2.0339 1.4487 22 6 2.1578 -2.6866 2.5767 23 6 2.9534 -2.0151 3.4901 24 9 3.4021 -2.6533 4.5931 25 6 3.2886 -0.6901 3.2724 26 6 2.8276 -0.0373 2.1420 27 9 3.1536 1.2563 1.9285 28 1 -0.3633 0.5495 0.8685 29 1 -0.3634 0.4774 -0.9100 30 1 -0.3633 -1.0268 0.0416 31 1 1.3119 3.9360 -1.1298 32 1 2.5082 -0.2168 -4.4297 33 1 3.0482 -1.5759 -3.4149 34 1 0.7323 -2.4609 -3.3680 35 1 0.1924 -1.1019 -4.3827 36 1 0.8623 -3.7928 -6.7826 37 1 1.0810 -2.5594 0.7351 38 1 1.8965 -3.7207 2.7461 39 1 3.9093 -0.1658 3.9840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603137993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:11 Heat of formation + Delta-G solvation = -197.086546 kcal Electronic energy + Delta-G solvation = -28761.671305 eV Core-core repulsion = 24305.227985 eV Total energy + Delta-G solvation = -4456.443320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.21248 -50.03265 -41.57718 -41.06133 -39.60649 -37.20442 -36.77901 -35.39264 -34.07730 -32.29175 -31.82308 -29.96989 -27.02587 -26.34459 -25.09964 -24.12142 -23.09138 -21.86790 -21.07864 -19.42971 -19.27197 -19.05459 -18.16635 -17.89285 -17.42582 -17.12533 -17.06519 -16.83538 -16.80113 -16.40599 -16.12746 -15.90279 -15.64463 -15.52547 -15.04573 -14.76234 -14.56302 -14.28762 -14.06038 -13.86485 -13.68417 -13.26736 -13.13660 -13.04080 -12.89650 -12.72145 -12.55869 -12.52735 -12.22604 -12.12554 -12.02656 -11.65374 -11.62891 -11.01950 -10.52067 -10.07871 -9.66072 -9.59123 -8.57541 -6.27335 -0.12179 -0.00503 1.11118 1.22349 1.25315 1.30899 1.78730 2.03768 2.08816 2.32047 2.75567 2.81836 2.88147 3.34731 3.54531 3.57015 3.85153 3.91992 3.99728 4.09132 4.23098 4.34237 4.42966 4.48249 4.67849 4.71815 4.78308 4.86021 4.89933 4.95543 5.03038 5.05123 5.07349 5.32253 5.53663 5.61832 5.67071 5.74602 5.76088 6.42367 6.94652 7.02775 7.28079 7.73770 8.53654 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.004995 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.710928 B = 5604.426814 C = 7046.789758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.067 4.067 3 H 0.079 0.921 4 C 0.502 3.498 5 O -0.598 6.598 6 N -0.476 5.476 7 C -0.338 4.338 8 H 0.098 0.902 9 C 0.067 3.933 10 N -0.867 5.867 11 Si 0.874 3.126 12 H -0.286 1.286 13 H -0.271 1.271 14 H -0.273 1.273 15 C 0.118 3.882 16 C -0.114 4.114 17 C 0.497 3.503 18 O -0.552 6.552 19 O -0.508 6.508 20 C -0.118 4.118 21 C -0.029 4.029 22 C -0.149 4.149 23 C 0.120 3.880 24 F -0.130 7.130 25 C -0.190 4.190 26 C 0.098 3.902 27 F -0.146 7.146 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.280 0.720 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.428 0.572 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -10.146 4.108 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 H 0.097 0.903 4 C 0.292 3.708 5 O -0.482 6.482 6 N -0.197 5.197 7 C -0.465 4.465 8 H 0.116 0.884 9 C -0.140 4.140 10 N -0.502 5.502 11 Si 0.701 3.299 12 H -0.214 1.214 13 H -0.196 1.196 14 H -0.199 1.199 15 C -0.005 4.005 16 C -0.153 4.153 17 C 0.340 3.660 18 O -0.444 6.444 19 O -0.322 6.322 20 C -0.119 4.119 21 C -0.047 4.047 22 C -0.167 4.167 23 C 0.101 3.899 24 F -0.109 7.109 25 C -0.210 4.210 26 C 0.078 3.922 27 F -0.125 7.125 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.289 0.711 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.721 -10.186 4.471 11.452 hybrid contribution 1.697 0.728 -0.252 1.863 sum -1.024 -9.458 4.219 10.407 Atomic orbital electron populations 1.21601 0.89645 1.02629 1.03934 1.20143 1.00289 0.98775 0.89544 0.90297 1.20540 0.80157 0.84520 0.85607 1.90530 1.44948 1.25575 1.87195 1.43657 1.55627 1.17157 1.03269 1.18755 1.13075 0.83566 1.31139 0.88447 1.25678 0.97419 0.95229 0.95719 1.69707 1.35808 1.07503 1.37193 0.87053 0.85476 0.78845 0.78545 1.21358 1.19640 1.19877 1.21235 0.95612 0.95358 0.88278 1.21549 1.01376 0.99301 0.93037 1.23343 0.82010 0.76229 0.84386 1.90709 1.23435 1.64003 1.66205 1.84507 1.45719 1.56440 1.45487 1.19908 0.99691 0.96521 0.95822 1.20840 0.96831 0.91369 0.95697 1.21460 0.99046 1.02593 0.93633 1.17257 0.97598 0.89991 0.85059 1.91517 1.87490 1.81352 1.50518 1.21034 1.05804 0.95164 0.98958 1.17505 0.99195 0.79022 0.96444 1.91460 1.91171 1.35113 1.94734 0.91954 0.90147 0.90970 0.90930 0.90632 0.92123 0.87004 0.85876 0.71070 0.82970 0.80759 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 8.84 71.98 0.64 -3.65 16 2 C -0.07 -2.74 1.45 -12.28 -0.02 -2.76 16 3 H 0.08 3.64 2.27 -2.39 -0.01 3.63 16 4 C 0.50 22.19 4.49 87.66 0.39 22.59 16 5 O -0.60 -27.76 14.40 -3.04 -0.04 -27.80 16 6 N -0.48 -20.77 1.96 -635.54 -1.25 -22.01 16 7 C -0.34 -15.81 7.41 84.04 0.62 -15.19 16 8 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 9 C 0.07 3.32 4.07 84.93 0.35 3.66 16 10 N -0.87 -44.30 13.96 21.66 0.30 -44.00 16 11 Si 0.87 42.58 23.50 68.60 1.61 44.19 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.27 -13.07 7.05 99.48 0.70 -12.37 16 14 H -0.27 -13.96 5.39 99.48 0.54 -13.42 16 15 C 0.12 4.61 4.73 86.38 0.41 5.02 16 16 C -0.11 -3.43 6.13 29.85 0.18 -3.25 16 17 C 0.50 14.02 8.33 71.24 0.59 14.61 16 18 O -0.55 -19.28 16.74 21.96 0.37 -18.91 16 19 O -0.51 -10.32 13.42 -51.49 -0.69 -11.01 16 20 C -0.12 -4.35 4.47 -19.82 -0.09 -4.44 16 21 C -0.03 -0.89 7.83 22.26 0.17 -0.71 16 22 C -0.15 -3.71 10.02 22.32 0.22 -3.49 16 23 C 0.12 3.19 7.30 22.37 0.16 3.36 16 24 F -0.13 -3.21 17.27 44.97 0.78 -2.43 16 25 C -0.19 -5.59 10.01 22.35 0.22 -5.37 16 26 C 0.10 3.55 7.24 22.37 0.16 3.71 16 27 F -0.15 -5.94 14.59 44.97 0.66 -5.28 16 28 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.08 3.17 6.19 -2.39 -0.01 3.16 16 30 H 0.07 2.14 7.31 -2.39 -0.02 2.12 16 31 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.08 2.98 8.02 -2.38 -0.02 2.97 16 33 H 0.06 2.55 7.25 -2.39 -0.02 2.53 16 34 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.43 4.65 9.10 -74.06 -0.67 3.98 16 37 H 0.15 4.25 7.35 -2.91 -0.02 4.23 16 38 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -62.50 332.12 6.03 -56.47 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.28 Total: 16.71 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 4.02 Total: 14.08 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.94 Total: -66.01 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -0.37 Total: -57.72 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 1.43 Total: -7.71 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.61 Total: 44.19 kcal Total: -62.50 6.03 -56.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603137993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.619 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds