Wall clock time and date at job start Tue Mar 31 2020 15:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46720 * 2 1 4 4 C 1.50693 * 109.47517 * 239.99602 * 2 1 3 5 5 H 1.08003 * 120.00284 * 239.99982 * 4 2 1 6 6 C 1.37882 * 119.99867 * 59.99697 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47023 * 60.00044 * 8 6 4 10 10 H 1.48502 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47385 * 300.00144 * 8 6 4 12 12 C 1.50701 * 109.47194 * 119.99401 * 2 1 3 13 13 O 1.21281 * 120.00029 * 32.25898 * 12 2 1 14 14 N 1.34777 * 120.00055 * 212.26371 * 12 2 1 15 15 C 1.46498 * 119.99946 * 5.02103 * 14 12 2 16 16 C 1.50699 * 109.47473 * 84.66375 * 15 14 12 17 17 O 1.20829 * 119.99572 * 359.97438 * 16 15 14 18 18 O 1.34221 * 120.00289 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99878 * 185.02302 * 14 12 2 20 20 C 1.50698 * 109.47132 * 89.99602 * 19 14 12 21 21 C 1.38256 * 119.96895 * 269.72596 * 20 19 14 22 22 C 1.38214 * 120.07201 * 179.76794 * 21 20 19 23 23 C 1.38404 * 119.99989 * 0.51049 * 22 21 20 24 24 F 1.35101 * 120.03661 * 179.72455 * 23 22 21 25 25 C 1.38649 * 119.93069 * 359.73795 * 23 22 21 26 26 F 1.35105 * 120.03704 * 180.02562 * 25 23 22 27 27 C 1.38214 * 119.96131 * 89.99896 * 20 19 14 28 28 H 1.09000 * 109.46487 * 173.47641 * 1 2 3 29 29 H 1.08997 * 109.47231 * 293.47173 * 1 2 3 30 30 H 1.08997 * 109.47155 * 53.47545 * 1 2 3 31 31 H 0.96998 * 120.00329 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46780 * 204.66333 * 15 14 12 33 33 H 1.08997 * 109.47137 * 324.66037 * 15 14 12 34 34 H 0.96696 * 117.00367 * 179.97438 * 18 16 15 35 35 H 1.09003 * 109.46985 * 209.99777 * 19 14 12 36 36 H 1.08997 * 109.47176 * 329.99557 * 19 14 12 37 37 H 1.08005 * 119.95645 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.99743 * 180.24932 * 22 21 20 39 39 H 1.07997 * 120.00467 * 359.95485 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8271 -0.4202 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2305 13 8 1.3971 -1.6296 1.7019 14 7 3.1876 -0.3238 1.8073 15 6 3.8984 0.8548 1.3055 16 6 3.3256 2.0954 1.9410 17 8 2.4165 2.0044 2.7316 18 8 3.8254 3.3013 1.6288 19 6 3.7323 -1.0823 2.9361 20 6 4.6450 -2.1648 2.4202 21 6 4.1361 -3.4171 2.1301 22 6 4.9704 -4.4101 1.6522 23 6 6.3188 -4.1544 1.4737 24 9 7.1360 -5.1262 1.0119 25 6 6.8303 -2.9001 1.7695 26 9 8.1461 -2.6481 1.5955 27 6 5.9912 -1.9063 2.2429 28 1 -0.3632 -1.0210 -0.1168 29 1 -0.3633 0.4093 0.9426 30 1 -0.3633 0.6116 -0.8258 31 1 0.7095 1.1616 -3.4844 32 1 4.9566 0.7743 1.5548 33 1 3.7837 0.9148 0.2233 34 1 3.4252 4.0678 2.0616 35 1 4.2947 -0.4123 3.5865 36 1 2.9152 -1.5337 3.4988 37 1 3.0846 -3.6184 2.2731 38 1 4.5708 -5.3867 1.4222 39 1 6.3883 -0.9288 2.4733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:25 Heat of formation + Delta-G solvation = -189.283947 kcal Electronic energy + Delta-G solvation = -28504.433985 eV Core-core repulsion = 24048.329010 eV Total energy + Delta-G solvation = -4456.104974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47734 -48.55562 -40.40054 -39.39473 -38.45778 -35.99864 -35.02608 -33.94654 -31.76497 -30.84801 -30.26823 -28.22988 -26.13410 -25.22004 -23.36378 -22.74014 -21.91002 -21.16751 -18.49485 -18.02024 -17.90133 -17.22013 -17.05276 -16.68545 -16.47656 -16.31704 -16.26159 -15.55733 -15.22990 -14.97173 -14.72304 -14.50720 -14.50536 -14.07331 -13.56300 -13.17987 -13.07973 -12.94420 -12.46960 -12.17342 -12.03850 -12.01421 -11.71075 -11.51541 -11.31888 -11.27657 -11.05854 -10.90113 -10.60717 -10.50064 -10.33240 -10.19223 -9.17129 -9.13410 -8.90994 -8.62380 -8.48308 -8.43739 -6.19409 -4.28583 0.83718 0.96677 2.40929 2.86789 3.20283 3.23787 3.28720 3.32678 3.61404 3.73406 3.80994 4.26444 4.32381 4.47766 4.66711 4.91135 5.03977 5.08312 5.13341 5.21842 5.39998 5.62845 5.66441 5.72273 5.79224 5.84155 5.96550 6.07540 6.38583 6.65083 6.68363 6.71353 6.78907 6.91853 7.01334 7.45285 7.66274 7.77622 7.89435 8.07436 8.13506 8.72222 8.96012 9.37889 10.86740 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.005247 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.648009 B = 5335.598457 C = 6754.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 H 0.039 0.961 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.541 3.459 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.122 3.878 16 C 0.459 3.541 17 O -0.506 6.506 18 O -0.517 6.517 19 C 0.154 3.846 20 C -0.080 4.080 21 C -0.071 4.071 22 C -0.125 4.125 23 C 0.065 3.935 24 F -0.133 7.133 25 C 0.062 3.938 26 F -0.132 7.132 27 C -0.115 4.115 28 H 0.040 0.960 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 -0.900 9.549 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 H 0.057 0.943 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.334 3.666 13 O -0.422 6.422 14 N -0.338 5.338 15 C -0.004 4.004 16 C 0.299 3.701 17 O -0.393 6.393 18 O -0.328 6.328 19 C 0.031 3.969 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.144 4.144 23 C 0.045 3.955 24 F -0.111 7.111 25 C 0.042 3.958 26 F -0.111 7.111 27 C -0.134 4.134 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.161 0.839 34 H 0.265 0.735 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.732 -1.666 9.663 13.815 hybrid contribution 0.533 0.034 -0.768 0.935 sum 10.265 -1.632 8.896 13.681 Atomic orbital electron populations 1.21585 0.95848 1.01203 0.99256 1.18926 0.94997 0.95897 0.88907 0.94325 1.20683 1.32682 1.12948 0.89066 0.92246 1.24897 0.94590 0.94810 0.98985 1.69884 1.35590 1.22417 1.24074 0.86557 0.79275 0.79936 0.81760 1.20027 1.21069 1.19993 1.22060 0.77444 0.82916 0.84206 1.90517 1.56185 1.31059 1.64467 1.47835 1.25077 1.26574 1.34328 1.21014 0.96630 0.80333 1.02416 1.24406 0.80927 0.85376 0.79416 1.90728 1.28123 1.87100 1.33329 1.84535 1.62800 1.17220 1.68288 1.20272 0.96494 0.91539 0.88617 1.20277 0.93152 0.95808 0.98963 1.21223 1.00830 0.91520 0.95382 1.21123 0.90558 1.01748 1.00977 1.17718 0.89341 0.85216 1.03248 1.91511 1.72084 1.61085 1.86431 1.17593 0.78966 0.93660 1.05547 1.91515 1.31576 1.94548 1.93425 1.20939 0.93001 0.98766 1.00728 0.94041 0.97070 0.89773 0.92484 0.86980 0.83918 0.73535 0.89905 0.88162 0.83438 0.83689 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.39 37.16 0.31 -2.68 16 2 C 0.03 0.81 1.86 -92.92 -0.17 0.63 16 3 H 0.04 0.93 5.90 -51.93 -0.31 0.63 16 4 C -0.52 -13.21 8.38 -34.44 -0.29 -13.49 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.50 11.40 55.43 0.63 -22.86 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.54 11.67 6.44 -10.98 -0.07 11.60 16 13 O -0.55 -12.80 15.69 5.56 0.09 -12.71 16 14 N -0.60 -10.19 2.00 -176.43 -0.35 -10.54 16 15 C 0.12 1.76 5.63 -5.19 -0.03 1.73 16 16 C 0.46 6.84 7.76 36.01 0.28 7.12 16 17 O -0.51 -9.21 17.07 -18.75 -0.32 -9.53 16 18 O -0.52 -6.12 13.42 -39.23 -0.53 -6.65 16 19 C 0.15 2.08 5.55 -5.19 -0.03 2.05 16 20 C -0.08 -1.04 5.46 -104.63 -0.57 -1.61 16 21 C -0.07 -0.96 9.70 -39.58 -0.38 -1.34 16 22 C -0.13 -1.59 10.02 -39.53 -0.40 -1.98 16 23 C 0.07 0.88 7.31 -39.37 -0.29 0.60 16 24 F -0.13 -1.88 17.18 2.25 0.04 -1.84 16 25 C 0.06 0.82 7.31 -39.36 -0.29 0.54 16 26 F -0.13 -1.80 17.18 2.25 0.04 -1.76 16 27 C -0.11 -1.35 9.68 -39.52 -0.38 -1.73 16 28 H 0.04 1.05 8.05 -51.93 -0.42 0.63 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 2.19 6.27 -51.93 -0.33 1.87 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.11 1.15 8.03 -51.93 -0.42 0.73 16 33 H 0.14 2.33 6.44 -51.93 -0.33 1.99 16 34 H 0.41 3.13 9.10 45.56 0.41 3.55 16 35 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 36 H 0.10 1.46 7.30 -51.93 -0.38 1.08 16 37 H 0.15 2.09 7.85 -52.48 -0.41 1.68 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -31.85 350.84 -5.94 -37.80 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.40 Total: 4.43 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -2.40 Total: 3.14 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.28 Total: -33.41 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.76 Total: -28.90 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.85 -5.94 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.487 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds